Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.41■□□□□ 0.86
RFX1P22670 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.41■□□□□ 0.86
RFX1P22670 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.41■□□□□ 0.86
RFX1P22670 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.41■□□□□ 0.86
RFX1P22670 AL031985.4-201ENST00000642138 673 ntBASIC20.41■□□□□ 0.86
RFX1P22670 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RFX1P22670 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RFX1P22670 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RFX1P22670 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX1P22670 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RFX1P22670 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
RFX1P22670 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
RFX1P22670 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 AK4P3-201ENST00000418260 669 ntBASIC20.4■□□□□ 0.86
RFX1P22670 AC004951.3-201ENST00000418645 1148 ntBASIC20.4■□□□□ 0.86
RFX1P22670 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.4■□□□□ 0.86
RFX1P22670 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.4■□□□□ 0.86
RFX1P22670 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.4■□□□□ 0.86
RFX1P22670 AC128688.1-201ENST00000487626 519 ntBASIC20.4■□□□□ 0.86
RFX1P22670 RCC2P6-201ENST00000526625 1557 ntBASIC20.4■□□□□ 0.86
RFX1P22670 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.4■□□□□ 0.86
RFX1P22670 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.4■□□□□ 0.86
RFX1P22670 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.4■□□□□ 0.86
RFX1P22670 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
RFX1P22670 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX1P22670 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
RFX1P22670 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
RFX1P22670 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
RFX1P22670 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.39■□□□□ 0.86
RFX1P22670 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RFX1P22670 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.39■□□□□ 0.86
RFX1P22670 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX1P22670 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.39■□□□□ 0.85
RFX1P22670 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.39■□□□□ 0.85
RFX1P22670 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
RFX1P22670 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
RFX1P22670 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX1P22670 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
RFX1P22670 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX1P22670 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX1P22670 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RFX1P22670 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX1P22670 AC091390.4-202ENST00000476426 537 ntBASIC20.38■□□□□ 0.85
RFX1P22670 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX1P22670 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.38■□□□□ 0.85
RFX1P22670 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX1P22670 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
RFX1P22670 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX1P22670 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX1P22670 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX1P22670 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX1P22670 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms