Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 AC018712.1-201ENST00000455767 687 ntBASIC18.89■□□□□ 0.61
COL4A2P08572 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.89■□□□□ 0.61
COL4A2P08572 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A2P08572 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.89■□□□□ 0.61
COL4A2P08572 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
COL4A2P08572 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A2P08572 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 AC112907.3-201ENST00000577781 2400 ntBASIC18.89■□□□□ 0.61
COL4A2P08572 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.89■□□□□ 0.61
COL4A2P08572 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
COL4A2P08572 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
COL4A2P08572 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A2P08572 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL4A2P08572 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A2P08572 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.88■□□□□ 0.61
COL4A2P08572 GPALPP1-207ENST00000611650 899 ntBASIC18.88■□□□□ 0.61
COL4A2P08572 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.88■□□□□ 0.61
COL4A2P08572 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 IRX1P1-201ENST00000438849 1838 ntBASIC18.88■□□□□ 0.61
COL4A2P08572 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL4A2P08572 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
COL4A2P08572 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.88■□□□□ 0.61
COL4A2P08572 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL4A2P08572 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 KRT18P41-201ENST00000518924 1277 ntBASIC18.88■□□□□ 0.61
COL4A2P08572 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.88■□□□□ 0.61
COL4A2P08572 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
COL4A2P08572 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
COL4A2P08572 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.88■□□□□ 0.61
COL4A2P08572 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL4A2P08572 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL4A2P08572 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
COL4A2P08572 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL4A2P08572 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A2P08572 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.87■□□□□ 0.61
COL4A2P08572 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 PMS2P1-201ENST00000431037 1228 ntBASIC18.87■□□□□ 0.61
COL4A2P08572 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL4A2P08572 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.87■□□□□ 0.61
COL4A2P08572 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
COL4A2P08572 AC243591.1-201ENST00000452967 1364 ntBASIC18.87■□□□□ 0.61
COL4A2P08572 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
COL4A2P08572 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL4A2P08572 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.87■□□□□ 0.61
COL4A2P08572 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A2P08572 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.86■□□□□ 0.61
COL4A2P08572 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A2P08572 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.86■□□□□ 0.61
COL4A2P08572 GUSBP12-201ENST00000513727 720 ntBASIC18.86■□□□□ 0.61
COL4A2P08572 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.86■□□□□ 0.61
COL4A2P08572 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
COL4A2P08572 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A2P08572 FP475955.4-201ENST00000623131 1990 ntBASIC18.86■□□□□ 0.61
COL4A2P08572 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 AL353692.3-201ENST00000407031 1396 ntBASIC18.86■□□□□ 0.61
COL4A2P08572 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL4A2P08572 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A2P08572 HEIH-201ENST00000623091 1652 ntBASIC18.86■□□□□ 0.61
COL4A2P08572 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.86■□□□□ 0.61
COL4A2P08572 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A2P08572 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.86■□□□□ 0.61
COL4A2P08572 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.86■□□□□ 0.61
COL4A2P08572 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL4A2P08572 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms