Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 NUS1P1-201ENST00000446295 882 ntBASIC20.77■□□□□ 0.92
MMP3P08254 UNC93B7-201ENST00000509439 705 ntBASIC20.77■□□□□ 0.92
MMP3P08254 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.77■□□□□ 0.92
MMP3P08254 MIR3180-4-201ENST00000582223 153 ntBASIC20.77■□□□□ 0.92
MMP3P08254 AC005332.3-201ENST00000589904 676 ntBASIC20.77■□□□□ 0.92
MMP3P08254 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.77■□□□□ 0.92
MMP3P08254 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.77■□□□□ 0.92
MMP3P08254 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP3P08254 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
MMP3P08254 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 LINC00265-3P-201ENST00000447588 903 ntBASIC20.76■□□□□ 0.91
MMP3P08254 AP003733.1-201ENST00000491725 852 ntBASIC20.76■□□□□ 0.91
MMP3P08254 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.76■□□□□ 0.91
MMP3P08254 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.76■□□□□ 0.91
MMP3P08254 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.76■□□□□ 0.91
MMP3P08254 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 AL390719.2-201ENST00000606993 987 ntBASIC20.76■□□□□ 0.91
MMP3P08254 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
MMP3P08254 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
MMP3P08254 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MMP3P08254 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP3P08254 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.75■□□□□ 0.91
MMP3P08254 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
MMP3P08254 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.75■□□□□ 0.91
MMP3P08254 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.75■□□□□ 0.91
MMP3P08254 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.75■□□□□ 0.91
MMP3P08254 AC246785.2-201ENST00000432512 513 ntBASIC20.75■□□□□ 0.91
MMP3P08254 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.75■□□□□ 0.91
MMP3P08254 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.75■□□□□ 0.91
MMP3P08254 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.75■□□□□ 0.91
MMP3P08254 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.75■□□□□ 0.91
MMP3P08254 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
MMP3P08254 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.75■□□□□ 0.91
MMP3P08254 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
MMP3P08254 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MMP3P08254 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 AL845331.1-201ENST00000424978 1190 ntBASIC20.74■□□□□ 0.91
MMP3P08254 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.74■□□□□ 0.91
MMP3P08254 TOB2P1-201ENST00000469761 992 ntBASIC20.74■□□□□ 0.91
MMP3P08254 AP000867.3-201ENST00000524675 377 ntBASIC20.74■□□□□ 0.91
MMP3P08254 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.74■□□□□ 0.91
MMP3P08254 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
MMP3P08254 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MMP3P08254 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.74■□□□□ 0.91
MMP3P08254 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.74■□□□□ 0.91
MMP3P08254 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.74■□□□□ 0.91
MMP3P08254 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.74■□□□□ 0.91
MMP3P08254 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.74■□□□□ 0.91
MMP3P08254 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.74■□□□□ 0.91
MMP3P08254 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.74■□□□□ 0.91
MMP3P08254 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.74■□□□□ 0.91
MMP3P08254 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.73■□□□□ 0.91
MMP3P08254 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.73■□□□□ 0.91
MMP3P08254 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC20.73■□□□□ 0.91
MMP3P08254 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.73■□□□□ 0.91
MMP3P08254 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MMP3P08254 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MMP3P08254 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MMP3P08254 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms