Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC034236.2-201ENST00000606662 1610 ntBASIC18.32■□□□□ 0.52
TNFP01375 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TNFP01375 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.32■□□□□ 0.52
TNFP01375 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 AC104390.1-201ENST00000555663 520 ntBASIC18.32■□□□□ 0.52
TNFP01375 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.32■□□□□ 0.52
TNFP01375 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 AC069148.1-201ENST00000608741 768 ntBASIC18.32■□□□□ 0.52
TNFP01375 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TNFP01375 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.32■□□□□ 0.52
TNFP01375 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TNFP01375 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TNFP01375 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.32■□□□□ 0.52
TNFP01375 HOXB1-202ENST00000577092 1414 ntBASIC18.32■□□□□ 0.52
TNFP01375 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.31■□□□□ 0.52
TNFP01375 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.31■□□□□ 0.52
TNFP01375 AC007952.6-201ENST00000573168 2673 ntBASIC18.31■□□□□ 0.52
TNFP01375 AC003957.1-201ENST00000625108 2673 ntBASIC18.31■□□□□ 0.52
TNFP01375 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
TNFP01375 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.31■□□□□ 0.52
TNFP01375 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TNFP01375 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.31■□□□□ 0.52
TNFP01375 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
TNFP01375 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.31■□□□□ 0.52
TNFP01375 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TNFP01375 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TNFP01375 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TNFP01375 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TNFP01375 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
TNFP01375 AC073130.3-201ENST00000624389 2278 ntBASIC18.3■□□□□ 0.52
TNFP01375 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.3■□□□□ 0.52
TNFP01375 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TNFP01375 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.3■□□□□ 0.52
TNFP01375 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TNFP01375 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TNFP01375 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.3■□□□□ 0.52
TNFP01375 AL645929.1-201ENST00000420084 975 ntBASIC18.3■□□□□ 0.52
TNFP01375 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.3■□□□□ 0.52
TNFP01375 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.3■□□□□ 0.52
TNFP01375 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.3■□□□□ 0.52
TNFP01375 AC068587.9-201ENST00000641814 219 ntBASIC18.3■□□□□ 0.52
TNFP01375 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TNFP01375 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TNFP01375 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TNFP01375 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFP01375 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFP01375 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFP01375 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFP01375 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.29■□□□□ 0.52
TNFP01375 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 SPDYE13P-201ENST00000445314 798 ntBASIC18.29■□□□□ 0.52
TNFP01375 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.29■□□□□ 0.52
TNFP01375 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
TNFP01375 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.29■□□□□ 0.52
TNFP01375 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFP01375 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.29■□□□□ 0.52
TNFP01375 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.29■□□□□ 0.52
TNFP01375 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.29■□□□□ 0.52
TNFP01375 AC010240.3-201ENST00000607688 395 ntBASIC18.29■□□□□ 0.52
TNFP01375 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TNFP01375 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TNFP01375 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms