Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
PTCD1O75127 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.07■■□□□ 1.44
PTCD1O75127 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.07■■□□□ 1.44
PTCD1O75127 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PTCD1O75127 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC24.07■■□□□ 1.44
PTCD1O75127 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
PTCD1O75127 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCD1O75127 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC24.06■■□□□ 1.44
PTCD1O75127 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.06■■□□□ 1.44
PTCD1O75127 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
PTCD1O75127 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.06■■□□□ 1.44
PTCD1O75127 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC24.06■■□□□ 1.44
PTCD1O75127 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC24.06■■□□□ 1.44
PTCD1O75127 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 KRT8P7-201ENST00000533003 1432 ntBASIC24.06■■□□□ 1.44
PTCD1O75127 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
PTCD1O75127 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC24.06■■□□□ 1.44
PTCD1O75127 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCD1O75127 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCD1O75127 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC24.05■■□□□ 1.44
PTCD1O75127 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC24.05■■□□□ 1.44
PTCD1O75127 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
PTCD1O75127 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC24.05■■□□□ 1.44
PTCD1O75127 AP003733.1-201ENST00000491725 852 ntBASIC24.05■■□□□ 1.44
PTCD1O75127 AC012615.1-201ENST00000565797 1299 ntBASIC24.05■■□□□ 1.44
PTCD1O75127 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC24.05■■□□□ 1.44
PTCD1O75127 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC24.05■■□□□ 1.44
PTCD1O75127 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC24.05■■□□□ 1.44
PTCD1O75127 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC24.05■■□□□ 1.44
PTCD1O75127 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC24.05■■□□□ 1.44
PTCD1O75127 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PTCD1O75127 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD1O75127 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC24.04■■□□□ 1.44
PTCD1O75127 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD1O75127 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC24.04■■□□□ 1.44
PTCD1O75127 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC24.04■■□□□ 1.44
PTCD1O75127 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC24.04■■□□□ 1.44
PTCD1O75127 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC24.04■■□□□ 1.44
PTCD1O75127 AC079781.3-201ENST00000449110 356 ntBASIC24.04■■□□□ 1.44
PTCD1O75127 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD1O75127 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC24.04■■□□□ 1.44
PTCD1O75127 AC104692.2-201ENST00000603054 253 ntBASIC24.04■■□□□ 1.44
PTCD1O75127 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC24.04■■□□□ 1.44
PTCD1O75127 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC24.04■■□□□ 1.44
PTCD1O75127 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD1O75127 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD1O75127 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC24.04■■□□□ 1.44
PTCD1O75127 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
PTCD1O75127 KRT8P32-201ENST00000512863 1461 ntBASIC24.04■■□□□ 1.44
PTCD1O75127 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCD1O75127 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC24.04■■□□□ 1.44
PTCD1O75127 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
PTCD1O75127 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
PTCD1O75127 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 AC006333.2-201ENST00000607957 2099 ntBASIC24.03■■□□□ 1.44
PTCD1O75127 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
PTCD1O75127 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 BAALC-202ENST00000306391 243 ntTSL 5 BASIC24.03■■□□□ 1.44
PTCD1O75127 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 BAALC-204ENST00000330955 222 ntTSL 5 BASIC24.03■■□□□ 1.44
PTCD1O75127 KRT18P31-201ENST00000506277 1292 ntBASIC24.03■■□□□ 1.44
PTCD1O75127 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC24.03■■□□□ 1.44
PTCD1O75127 AL390719.2-201ENST00000606993 987 ntBASIC24.03■■□□□ 1.44
PTCD1O75127 AL121772.3-201ENST00000610840 674 ntBASIC24.03■■□□□ 1.44
PTCD1O75127 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC24.03■■□□□ 1.44
PTCD1O75127 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 FEM1AP3-201ENST00000403722 1741 ntBASIC24.03■■□□□ 1.44
PTCD1O75127 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 IRX1P1-201ENST00000438849 1838 ntBASIC24.03■■□□□ 1.44
PTCD1O75127 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCD1O75127 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
PTCD1O75127 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
PTCD1O75127 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC24.02■■□□□ 1.44
PTCD1O75127 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms