Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
LDB3O75112 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 AC012306.2-201ENST00000609350 630 ntBASIC17.64■□□□□ 0.41
LDB3O75112 AC097493.4-201ENST00000641197 219 ntBASIC17.64■□□□□ 0.41
LDB3O75112 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.64■□□□□ 0.41
LDB3O75112 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.64■□□□□ 0.41
LDB3O75112 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LDB3O75112 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.64■□□□□ 0.41
LDB3O75112 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.64■□□□□ 0.41
LDB3O75112 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
LDB3O75112 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LDB3O75112 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.64■□□□□ 0.41
LDB3O75112 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.63■□□□□ 0.41
LDB3O75112 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LDB3O75112 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LDB3O75112 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.63■□□□□ 0.41
LDB3O75112 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.63■□□□□ 0.41
LDB3O75112 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
LDB3O75112 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.63■□□□□ 0.41
LDB3O75112 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
LDB3O75112 LINC01023-201ENST00000606054 436 ntBASIC17.63■□□□□ 0.41
LDB3O75112 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.63■□□□□ 0.41
LDB3O75112 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.63■□□□□ 0.41
LDB3O75112 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.63■□□□□ 0.41
LDB3O75112 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LDB3O75112 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
LDB3O75112 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.63■□□□□ 0.41
LDB3O75112 MTMR9LP-203ENST00000426597 1545 ntBASIC17.62■□□□□ 0.41
LDB3O75112 AL109659.2-201ENST00000606809 1674 ntBASIC17.62■□□□□ 0.41
LDB3O75112 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.62■□□□□ 0.41
LDB3O75112 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
LDB3O75112 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.62■□□□□ 0.41
LDB3O75112 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.62■□□□□ 0.41
LDB3O75112 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
LDB3O75112 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDB3O75112 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDB3O75112 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LDB3O75112 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.62■□□□□ 0.41
LDB3O75112 AC036111.1-201ENST00000533973 1582 ntBASIC17.62■□□□□ 0.41
LDB3O75112 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.61■□□□□ 0.41
LDB3O75112 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.61■□□□□ 0.41
LDB3O75112 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
LDB3O75112 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LDB3O75112 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.61■□□□□ 0.41
LDB3O75112 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.61■□□□□ 0.41
LDB3O75112 HMGA1P5-201ENST00000412453 271 ntBASIC17.61■□□□□ 0.41
LDB3O75112 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.61■□□□□ 0.41
LDB3O75112 SLC25A3P1-201ENST00000443844 931 ntBASIC17.61■□□□□ 0.41
LDB3O75112 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
LDB3O75112 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.61■□□□□ 0.41
LDB3O75112 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.61■□□□□ 0.41
LDB3O75112 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.61■□□□□ 0.41
LDB3O75112 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
LDB3O75112 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 KRT8P45-201ENST00000414328 1447 ntBASIC17.61■□□□□ 0.41
LDB3O75112 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LDB3O75112 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.61■□□□□ 0.41
LDB3O75112 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LDB3O75112 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
LDB3O75112 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LDB3O75112 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.6■□□□□ 0.41
LDB3O75112 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
LDB3O75112 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.6■□□□□ 0.41
LDB3O75112 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.6■□□□□ 0.41
LDB3O75112 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.6■□□□□ 0.41
LDB3O75112 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.6■□□□□ 0.41
LDB3O75112 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.6■□□□□ 0.41
LDB3O75112 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDB3O75112 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms