Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.44■□□□□ 0.38
PRKNO60260 RCC2P3-201ENST00000418112 1537 ntBASIC17.44■□□□□ 0.38
PRKNO60260 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.44■□□□□ 0.38
PRKNO60260 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.44■□□□□ 0.38
PRKNO60260 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PRKNO60260 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.44■□□□□ 0.38
PRKNO60260 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.44■□□□□ 0.38
PRKNO60260 AC139887.4-201ENST00000607877 719 ntBASIC17.44■□□□□ 0.38
PRKNO60260 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PRKNO60260 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PRKNO60260 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PRKNO60260 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 AC008556.1-201ENST00000610908 2040 ntBASIC17.43■□□□□ 0.38
PRKNO60260 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PRKNO60260 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.43■□□□□ 0.38
PRKNO60260 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.43■□□□□ 0.38
PRKNO60260 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 BX664615.1-201ENST00000443558 458 ntBASIC17.43■□□□□ 0.38
PRKNO60260 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 DUX4L26-201ENST00000489078 1255 ntBASIC17.43■□□□□ 0.38
PRKNO60260 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 AC004408.2-201ENST00000623613 2777 ntBASIC17.43■□□□□ 0.38
PRKNO60260 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.43■□□□□ 0.38
PRKNO60260 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PRKNO60260 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PRKNO60260 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PRKNO60260 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 AC036111.1-201ENST00000533973 1582 ntBASIC17.42■□□□□ 0.38
PRKNO60260 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.42■□□□□ 0.38
PRKNO60260 AC009947.2-201ENST00000444014 672 ntBASIC17.42■□□□□ 0.38
PRKNO60260 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PRKNO60260 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.42■□□□□ 0.38
PRKNO60260 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PRKNO60260 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.42■□□□□ 0.38
PRKNO60260 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PRKNO60260 AL023973.1-201ENST00000624619 620 ntBASIC17.42■□□□□ 0.38
PRKNO60260 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PRKNO60260 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PRKNO60260 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PRKNO60260 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.42■□□□□ 0.38
PRKNO60260 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.42■□□□□ 0.38
PRKNO60260 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PRKNO60260 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PRKNO60260 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.42■□□□□ 0.38
PRKNO60260 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
PRKNO60260 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.41■□□□□ 0.38
PRKNO60260 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PRKNO60260 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms