Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17■□□□□ 0.31
SSX4O60224 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17■□□□□ 0.31
SSX4O60224 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17■□□□□ 0.31
SSX4O60224 FST-202ENST00000396947 2538 ntTSL 5 BASIC17■□□□□ 0.31
SSX4O60224 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17■□□□□ 0.31
SSX4O60224 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17■□□□□ 0.31
SSX4O60224 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SSX4O60224 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SSX4O60224 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.99■□□□□ 0.31
SSX4O60224 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.99■□□□□ 0.31
SSX4O60224 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SSX4O60224 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.99■□□□□ 0.31
SSX4O60224 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SSX4O60224 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 RARRES2P10-201ENST00000564312 460 ntBASIC16.99■□□□□ 0.31
SSX4O60224 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 AC113410.3-201ENST00000623366 203 ntBASIC16.99■□□□□ 0.31
SSX4O60224 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 AL031598.1-201ENST00000561511 1773 ntBASIC16.99■□□□□ 0.31
SSX4O60224 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
SSX4O60224 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.99■□□□□ 0.31
SSX4O60224 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.99■□□□□ 0.31
SSX4O60224 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SSX4O60224 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.99■□□□□ 0.31
SSX4O60224 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.98■□□□□ 0.31
SSX4O60224 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SSX4O60224 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.98■□□□□ 0.31
SSX4O60224 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.98■□□□□ 0.31
SSX4O60224 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC16.98■□□□□ 0.31
SSX4O60224 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.98■□□□□ 0.31
SSX4O60224 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.98■□□□□ 0.31
SSX4O60224 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.98■□□□□ 0.31
SSX4O60224 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SSX4O60224 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SSX4O60224 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SSX4O60224 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.98■□□□□ 0.31
SSX4O60224 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.97■□□□□ 0.31
SSX4O60224 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.97■□□□□ 0.31
SSX4O60224 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SSX4O60224 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.97■□□□□ 0.31
SSX4O60224 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.97■□□□□ 0.31
SSX4O60224 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
SSX4O60224 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.97■□□□□ 0.31
SSX4O60224 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SSX4O60224 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SSX4O60224 MIR1224-201ENST00000408193 85 ntBASIC16.97■□□□□ 0.31
SSX4O60224 FAM210CP-201ENST00000445714 574 ntBASIC16.97■□□□□ 0.31
SSX4O60224 KRT18P21-201ENST00000515767 1272 ntBASIC16.97■□□□□ 0.31
SSX4O60224 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.97■□□□□ 0.31
SSX4O60224 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SSX4O60224 AC124067.4-201ENST00000519691 2379 ntBASIC16.97■□□□□ 0.31
SSX4O60224 AL139384.1-201ENST00000612143 3047 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms