Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.97■□□□□ 0.15
SDCBPO00560 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
SDCBPO00560 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC15.97■□□□□ 0.15
SDCBPO00560 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.97■□□□□ 0.15
SDCBPO00560 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC15.97■□□□□ 0.15
SDCBPO00560 AC008403.3-201ENST00000598924 454 ntBASIC15.97■□□□□ 0.15
SDCBPO00560 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
SDCBPO00560 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
SDCBPO00560 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
SDCBPO00560 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC15.97■□□□□ 0.15
SDCBPO00560 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SDCBPO00560 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.97■□□□□ 0.15
SDCBPO00560 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.96■□□□□ 0.15
SDCBPO00560 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
SDCBPO00560 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
SDCBPO00560 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC15.96■□□□□ 0.15
SDCBPO00560 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.96■□□□□ 0.15
SDCBPO00560 AC026366.1-201ENST00000488803 879 ntBASIC15.96■□□□□ 0.15
SDCBPO00560 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.15
SDCBPO00560 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC15.96■□□□□ 0.15
SDCBPO00560 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.96■□□□□ 0.15
SDCBPO00560 KRT18P6-201ENST00000555540 1265 ntBASIC15.96■□□□□ 0.15
SDCBPO00560 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC15.96■□□□□ 0.15
SDCBPO00560 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC15.96■□□□□ 0.15
SDCBPO00560 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.96■□□□□ 0.15
SDCBPO00560 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
SDCBPO00560 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SDCBPO00560 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SDCBPO00560 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC15.96■□□□□ 0.14
SDCBPO00560 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SDCBPO00560 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.96■□□□□ 0.14
SDCBPO00560 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
SDCBPO00560 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
SDCBPO00560 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 AC067852.2-201ENST00000590513 2313 ntBASIC15.95■□□□□ 0.14
SDCBPO00560 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
SDCBPO00560 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
SDCBPO00560 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.95■□□□□ 0.14
SDCBPO00560 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 AC069544.1-201ENST00000609399 999 ntBASIC15.95■□□□□ 0.14
SDCBPO00560 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.95■□□□□ 0.14
SDCBPO00560 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
SDCBPO00560 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
SDCBPO00560 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
SDCBPO00560 NBPF21P-201ENST00000425093 1451 ntBASIC15.95■□□□□ 0.14
SDCBPO00560 PKD1P1-201ENST00000458669 6805 ntBASIC15.95■□□□□ 0.14
SDCBPO00560 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms