Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 AL035685.1-201ENST00000636663 812 ntBASIC21.05■□□□□ 0.96
ABCA1O95477 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ABCA1O95477 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ABCA1O95477 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA1O95477 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA1O95477 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA1O95477 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA1O95477 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
ABCA1O95477 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
ABCA1O95477 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA1O95477 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA1O95477 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ABCA1O95477 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ABCA1O95477 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ABCA1O95477 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.02■□□□□ 0.96
ABCA1O95477 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ABCA1O95477 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ABCA1O95477 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
ABCA1O95477 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.02■□□□□ 0.95
ABCA1O95477 AC129492.7-201ENST00000622992 756 ntBASIC21.02■□□□□ 0.95
ABCA1O95477 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ABCA1O95477 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ABCA1O95477 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
ABCA1O95477 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ABCA1O95477 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.01■□□□□ 0.95
ABCA1O95477 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ABCA1O95477 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.01■□□□□ 0.95
ABCA1O95477 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA1O95477 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA1O95477 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ABCA1O95477 AL451085.2-201ENST00000605085 799 ntBASIC21■□□□□ 0.95
ABCA1O95477 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA1O95477 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ABCA1O95477 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ABCA1O95477 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ABCA1O95477 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.99■□□□□ 0.95
ABCA1O95477 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ABCA1O95477 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ABCA1O95477 ECEL1P2-201ENST00000461596 1295 ntBASIC20.98■□□□□ 0.95
ABCA1O95477 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA1O95477 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA1O95477 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ABCA1O95477 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.98■□□□□ 0.95
ABCA1O95477 AL157400.5-201ENST00000507624 621 ntBASIC20.97■□□□□ 0.95
ABCA1O95477 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.97■□□□□ 0.95
ABCA1O95477 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA1O95477 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA1O95477 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.96■□□□□ 0.95
ABCA1O95477 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA1O95477 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA1O95477 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
ABCA1O95477 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA1O95477 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ABCA1O95477 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
ABCA1O95477 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
ABCA1O95477 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.95■□□□□ 0.95
ABCA1O95477 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.95■□□□□ 0.95
ABCA1O95477 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.95■□□□□ 0.94
ABCA1O95477 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ABCA1O95477 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ABCA1O95477 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.94■□□□□ 0.94
ABCA1O95477 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA1O95477 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.94■□□□□ 0.94
ABCA1O95477 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ABCA1O95477 AL135925.1-201ENST00000605920 1701 ntBASIC20.94■□□□□ 0.94
ABCA1O95477 AL592295.1-201ENST00000400984 884 ntBASIC20.93■□□□□ 0.94
ABCA1O95477 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.93■□□□□ 0.94
ABCA1O95477 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.93■□□□□ 0.94
ABCA1O95477 AC133552.2-201ENST00000619106 1032 ntBASIC20.92■□□□□ 0.94
ABCA1O95477 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ABCA1O95477 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA1O95477 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ABCA1O95477 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ABCA1O95477 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.9■□□□□ 0.94
ABCA1O95477 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
ABCA1O95477 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.89■□□□□ 0.93
ABCA1O95477 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
ABCA1O95477 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ABCA1O95477 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.89■□□□□ 0.93
ABCA1O95477 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ABCA1O95477 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA1O95477 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA1O95477 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA1O95477 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ABCA1O95477 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.88■□□□□ 0.93
ABCA1O95477 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ABCA1O95477 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA1O95477 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ABCA1O95477 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.87■□□□□ 0.93
ABCA1O95477 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCA1O95477 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCA1O95477 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCA1O95477 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.87■□□□□ 0.93
ABCA1O95477 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ABCA1O95477 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.87■□□□□ 0.93
ABCA1O95477 AC126177.7-201ENST00000547904 679 ntBASIC20.87■□□□□ 0.93
ABCA1O95477 AC007029.1-201ENST00000604183 313 ntBASIC20.87■□□□□ 0.93
ABCA1O95477 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ABCA1O95477 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
ABCA1O95477 AL592293.1-201ENST00000502889 1188 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms