Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 AC018358.1-201ENST00000631079 1402 ntBASIC22.08■■□□□ 1.13
SGCEO43556 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.08■■□□□ 1.13
SGCEO43556 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.08■■□□□ 1.13
SGCEO43556 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.12
SGCEO43556 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SGCEO43556 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SGCEO43556 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.07■■□□□ 1.12
SGCEO43556 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SGCEO43556 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SGCEO43556 ZNRF2P2-203ENST00000454624 420 ntBASIC22.06■■□□□ 1.12
SGCEO43556 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.06■■□□□ 1.12
SGCEO43556 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.06■■□□□ 1.12
SGCEO43556 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.06■■□□□ 1.12
SGCEO43556 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SGCEO43556 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
SGCEO43556 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
SGCEO43556 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SGCEO43556 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SGCEO43556 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SGCEO43556 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.05■■□□□ 1.12
SGCEO43556 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.05■■□□□ 1.12
SGCEO43556 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SGCEO43556 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SGCEO43556 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
SGCEO43556 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
SGCEO43556 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.04■■□□□ 1.12
SGCEO43556 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SGCEO43556 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
SGCEO43556 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SGCEO43556 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
SGCEO43556 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.02■■□□□ 1.12
SGCEO43556 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.02■■□□□ 1.12
SGCEO43556 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SGCEO43556 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.11
SGCEO43556 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.01■■□□□ 1.11
SGCEO43556 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SGCEO43556 ABHD17AP4-201ENST00000411545 909 ntBASIC22.01■■□□□ 1.11
SGCEO43556 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SGCEO43556 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SGCEO43556 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
SGCEO43556 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SGCEO43556 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22■■□□□ 1.11
SGCEO43556 DUX4L13-201ENST00000554103 1267 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L15-201ENST00000611059 1267 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L11-201ENST00000611504 1267 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L12-201ENST00000614593 1267 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L23-201ENST00000615195 1269 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L24-201ENST00000617576 1269 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L22-201ENST00000618238 1269 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L20-201ENST00000619712 1269 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L14-201ENST00000621227 1267 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L21-201ENST00000622058 1269 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L10-201ENST00000622460 1267 ntBASIC22■■□□□ 1.11
SGCEO43556 DUX4L25-201ENST00000624915 1269 ntBASIC22■■□□□ 1.11
SGCEO43556 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SGCEO43556 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
SGCEO43556 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SGCEO43556 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SGCEO43556 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
SGCEO43556 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SGCEO43556 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SGCEO43556 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SGCEO43556 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SGCEO43556 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SGCEO43556 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SGCEO43556 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SGCEO43556 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SGCEO43556 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SGCEO43556 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.96■■□□□ 1.11
SGCEO43556 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SGCEO43556 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SGCEO43556 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
SGCEO43556 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SGCEO43556 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SGCEO43556 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
SGCEO43556 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SGCEO43556 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.94■■□□□ 1.1
SGCEO43556 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SGCEO43556 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
SGCEO43556 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SGCEO43556 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SGCEO43556 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.93■■□□□ 1.1
SGCEO43556 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SGCEO43556 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
SGCEO43556 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SGCEO43556 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SGCEO43556 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.92■■□□□ 1.1
SGCEO43556 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.92■■□□□ 1.1
SGCEO43556 RNF166-209ENST00000567844 633 ntTSL 5 BASIC21.92■■□□□ 1.1
SGCEO43556 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SGCEO43556 AL121749.1-202ENST00000609313 2153 ntBASIC21.91■■□□□ 1.1
SGCEO43556 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SGCEO43556 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.91■■□□□ 1.1
SGCEO43556 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.91■■□□□ 1.1
SGCEO43556 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SGCEO43556 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SGCEO43556 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SGCEO43556 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SGCEO43556 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
SGCEO43556 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms