RNA–Protein interactions for RNA: ENST00000637573.1

KCNQ2-238, Transcript of potassium voltage-gated channel subfamily Q member 2, human

TSL 5

Gene KCNQ2, Length 100 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KCNQ2-238	ENST00000637573	PELP1	Q8IZL8	1130 aa	Known RBP	12.7	□□□□□ -0.38
KCNQ2-238	ENST00000637573	NISCH	Q9Y2I1	1504 aa		12.62	□□□□□ -0.39
KCNQ2-238	ENST00000637573	MYT1	Q01538	1121 aa		12.51	□□□□□ -0.41
KCNQ2-238	ENST00000637573	HRC	P23327	699 aa		12.17	□□□□□ -0.46
KCNQ2-238	ENST00000637573	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.9	□□□□□ -0.5
KCNQ2-238	ENST00000637573	ZEB1	P37275	1124 aa	Predicted RBP	11.69	□□□□□ -0.54
KCNQ2-238	ENST00000637573	DCAF1	Q9Y4B6	1507 aa		11.56	□□□□□ -0.56
KCNQ2-238	ENST00000637573	PCGF6	Q9BYE7	350 aa		11.51	□□□□□ -0.57
KCNQ2-238	ENST00000637573	SCAF1	Q9H7N4	1312 aa	Known RBP	11.47	□□□□□ -0.57
KCNQ2-238	ENST00000637573	CCDC180	Q9P1Z9	1646 aa		11.43	□□□□□ -0.58
KCNQ2-238	ENST00000637573	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.43	□□□□□ -0.58
KCNQ2-238	ENST00000637573	TRIM26	Q12899	539 aa	Predicted RBP	11.39	□□□□□ -0.59
KCNQ2-238	ENST00000637573	CENPB	P07199	599 aa	Predicted RBP	11.33	□□□□□ -0.6
KCNQ2-238	ENST00000637573	ACIN1	Q9UKV3	1341 aa	Known RBP	11.33	□□□□□ -0.6
KCNQ2-238	ENST00000637573	CHIC1	Q5VXU3	224 aa		11.28	□□□□□ -0.6
KCNQ2-238	ENST00000637573	MYO15B	Q96JP2	1530 aa		11.25	□□□□□ -0.61
KCNQ2-238	ENST00000637573	SUPT5H	O00267	1087 aa	Known RBP	11.13	□□□□□ -0.63
KCNQ2-238	ENST00000637573	CLSPN	Q9HAW4	1339 aa		11.1	□□□□□ -0.63
KCNQ2-238	ENST00000637573	GTF3C3	Q9Y5Q9	886 aa		11.09	□□□□□ -0.63
KCNQ2-238	ENST00000637573	NEUROD1	Q13562	356 aa		11.06	□□□□□ -0.64
KCNQ2-238	ENST00000637573	ERICH6	Q7L0X2	663 aa		11.05	□□□□□ -0.64
KCNQ2-238	ENST00000637573	BCL11A	Q9H165	835 aa		10.96	□□□□□ -0.65
KCNQ2-238	ENST00000637573	ANP32E	Q9BTT0	268 aa		10.92	□□□□□ -0.66
KCNQ2-238	ENST00000637573	SHROOM4	Q9ULL8	1493 aa		10.91	□□□□□ -0.66
KCNQ2-238	ENST00000637573	DIEXF	Q68CQ4	756 aa	Known RBP	10.9	□□□□□ -0.66
KCNQ2-238	ENST00000637573	ZCCHC6	Q5VYS8	1495 aa	Known RBP	10.81	□□□□□ -0.68
KCNQ2-238	ENST00000637573	LOC105371045	A0A1W2PR82	267 aa		10.79	□□□□□ -0.68
KCNQ2-238	ENST00000637573	TRIM41	Q8WV44	630 aa		10.77	□□□□□ -0.69
KCNQ2-238	ENST00000637573	MYT1L	Q9UL68	1186 aa		10.77	□□□□□ -0.69
KCNQ2-238	ENST00000637573	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.73	□□□□□ -0.69
KCNQ2-238	ENST00000637573	FAM9A	Q8IZU1	332 aa	Predicted RBP	10.73	□□□□□ -0.69
KCNQ2-238	ENST00000637573	PRKCSH	P14314	528 aa	Predicted RBP	10.72	□□□□□ -0.69
KCNQ2-238	ENST00000637573	CCER1	Q8TC90	406 aa	Predicted RBP	10.71	□□□□□ -0.69
KCNQ2-238	ENST00000637573	APLP2	Q06481	763 aa		10.7	□□□□□ -0.7
KCNQ2-238	ENST00000637573	TSHZ2	Q9NRE2	1034 aa		10.58	□□□□□ -0.72
KCNQ2-238	ENST00000637573	CSRNP3	Q8WYN3	585 aa		10.56	□□□□□ -0.72
KCNQ2-238	ENST00000637573	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.54	□□□□□ -0.72
KCNQ2-238	ENST00000637573	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.51	□□□□□ -0.73
KCNQ2-238	ENST00000637573	ERICH6B	Q5W0A0	696 aa		10.5	□□□□□ -0.73
KCNQ2-238	ENST00000637573	MIER1	Q8N108	512 aa		10.47	□□□□□ -0.73
KCNQ2-238	ENST00000637573	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.47	□□□□□ -0.73
KCNQ2-238	ENST00000637573	YTHDC1	Q96MU7	727 aa	Known RBP	10.46	□□□□□ -0.73
KCNQ2-238	ENST00000637573	FANCI	Q9NVI1	1328 aa		10.38	□□□□□ -0.75
KCNQ2-238	ENST00000637573	NEFL	P07196	543 aa		10.34	□□□□□ -0.75
KCNQ2-238	ENST00000637573	RBM19	Q9Y4C8	960 aa	Known RBP	10.33	□□□□□ -0.76
KCNQ2-238	ENST00000637573	ABCC9	O60706	1549 aa		10.31	□□□□□ -0.76
KCNQ2-238	ENST00000637573	RB1CC1	Q8TDY2	1594 aa		10.31	□□□□□ -0.76
KCNQ2-238	ENST00000637573	UBE2Q2	Q8WVN8	375 aa		10.26	□□□□□ -0.77
KCNQ2-238	ENST00000637573	DEK	P35659	375 aa	Known RBP	10.21	□□□□□ -0.77
KCNQ2-238	ENST00000637573	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.21	□□□□□ -0.77
KCNQ2-238	ENST00000637573	EEA1	Q15075	1411 aa		10.2	□□□□□ -0.78
KCNQ2-238	ENST00000637573	TNIK	Q9UKE5	1360 aa		10.2	□□□□□ -0.78
KCNQ2-238	ENST00000637573	RSF1	Q96T23	1441 aa	Predicted RBP	10.19	□□□□□ -0.78
KCNQ2-238	ENST00000637573	FKBP8	Q14318	412 aa		10.16	□□□□□ -0.78
KCNQ2-238	ENST00000637573	CCER2	I3L3R5	266 aa		10.12	□□□□□ -0.79
KCNQ2-238	ENST00000637573	MSH5	O43196	834 aa		10.12	□□□□□ -0.79
KCNQ2-238	ENST00000637573	CEP162	Q5TB80	1403 aa		10.12	□□□□□ -0.79
KCNQ2-238	ENST00000637573	RTL5	Q5HYW3	569 aa	Predicted RBP	10.08	□□□□□ -0.8
KCNQ2-238	ENST00000637573	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.08	□□□□□ -0.8
KCNQ2-238	ENST00000637573	EIF5B	O60841	1220 aa	Known RBP	10.05	□□□□□ -0.8
KCNQ2-238	ENST00000637573	DCAF8L2	P0C7V8	631 aa		10.04	□□□□□ -0.8
KCNQ2-238	ENST00000637573	GLIPR1L2	Q4G1C9	344 aa		10.04	□□□□□ -0.8
KCNQ2-238	ENST00000637573	USP35	Q9P2H5	1018 aa		10.04	□□□□□ -0.8
KCNQ2-238	ENST00000637573	NOP58	Q9Y2X3	529 aa	Known RBP	10.04	□□□□□ -0.8
KCNQ2-238	ENST00000637573	SLC24A1	O60721	1099 aa		10.03	□□□□□ -0.8
KCNQ2-238	ENST00000637573	BCAN	Q96GW7	911 aa		10.02	□□□□□ -0.81
KCNQ2-238	ENST00000637573	C11orf95	C9JLR9	678 aa	Predicted RBP	10.01	□□□□□ -0.81
KCNQ2-238	ENST00000637573	DAXX	Q9UER7	740 aa	Predicted RBP	10.01	□□□□□ -0.81
KCNQ2-238	ENST00000637573	TIMELESS	Q9UNS1	1208 aa		10.01	□□□□□ -0.81
KCNQ2-238	ENST00000637573	PPP4R2	Q9NY27	417 aa		10	□□□□□ -0.81
KCNQ2-238	ENST00000637573	GOLGA3	Q08378	1498 aa		9.99	□□□□□ -0.81
KCNQ2-238	ENST00000637573	SALL2	Q9Y467	1007 aa	Predicted RBP	9.98	□□□□□ -0.81
KCNQ2-238	ENST00000637573	DHX57	Q6P158	1386 aa	Known RBP	9.98	□□□□□ -0.81
KCNQ2-238	ENST00000637573	ANP32C	O43423	234 aa		9.95	□□□□□ -0.82
KCNQ2-238	ENST00000637573	HNRNPUL2	Q1KMD3	747 aa	Known RBP	9.95	□□□□□ -0.82
KCNQ2-238	ENST00000637573	RSPH6A	Q9H0K4	717 aa		9.95	□□□□□ -0.82
KCNQ2-238	ENST00000637573	CUX2	O14529	1486 aa		9.94	□□□□□ -0.82
KCNQ2-238	ENST00000637573	ANP32A	P39687	249 aa	Known RBP	9.94	□□□□□ -0.82
KCNQ2-238	ENST00000637573	VPS8	Q8N3P4	1428 aa		9.92	□□□□□ -0.82
KCNQ2-238	ENST00000637573	CCDC136	Q96JN2	1154 aa		9.92	□□□□□ -0.82
KCNQ2-238	ENST00000637573	PKNOX2	Q96KN3	472 aa		9.92	□□□□□ -0.82
KCNQ2-238	ENST00000637573	EIF4G1	Q04637	1599 aa	Known RBP	9.92	□□□□□ -0.82
KCNQ2-238	ENST00000637573	CEP164	Q9UPV0	1460 aa		9.91	□□□□□ -0.82
KCNQ2-238	ENST00000637573	WASHC2A	Q641Q2	1341 aa		9.91	□□□□□ -0.82
KCNQ2-238	ENST00000637573	PPM1G	O15355	546 aa	Predicted RBP	9.91	□□□□□ -0.82
KCNQ2-238	ENST00000637573	ZBTB47	Q9UFB7	747 aa	Predicted RBP	9.91	□□□□□ -0.82
KCNQ2-238	ENST00000637573	WASHC2C	Q9Y4E1	1318 aa		9.9	□□□□□ -0.82
KCNQ2-238	ENST00000637573	IPO9	Q96P70	1041 aa	Known RBP	9.9	□□□□□ -0.82
KCNQ2-238	ENST00000637573	BAZ1B	Q9UIG0	1483 aa	Known RBP	9.9	□□□□□ -0.83
KCNQ2-238	ENST00000637573	EHMT2	Q96KQ7	1210 aa		9.89	□□□□□ -0.83
KCNQ2-238	ENST00000637573	KIF21B	O75037	1637 aa		9.87	□□□□□ -0.83
KCNQ2-238	ENST00000637573	UBTF	P17480	764 aa	Known RBP	9.87	□□□□□ -0.83
KCNQ2-238	ENST00000637573	ITGAE	P38570	1179 aa		9.87	□□□□□ -0.83
KCNQ2-238	ENST00000637573	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	9.85	□□□□□ -0.83
KCNQ2-238	ENST00000637573	PPP1R15A	O75807	674 aa	Predicted RBP	9.85	□□□□□ -0.83
KCNQ2-238	ENST00000637573	CLIP1	P30622	1438 aa		9.83	□□□□□ -0.84
KCNQ2-238	ENST00000637573	NBR1	Q14596	966 aa		9.82	□□□□□ -0.84
KCNQ2-238	ENST00000637573	RRBP1	Q9P2E9	1410 aa	Known RBP	9.82	□□□□□ -0.84
KCNQ2-238	ENST00000637573	FAM43A	Q8N2R8	423 aa		9.8	□□□□□ -0.84
KCNQ2-238	ENST00000637573	DDX10	Q13206	875 aa	Known RBP	9.78	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms