RNA–Protein interactions for RNA: ENST00000637397.1

CLN5-218, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 5

Gene CLN5, Length 5,060 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-218ENST00000637397 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
CLN5-218ENST00000637397 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
CLN5-218ENST00000637397 SUPT5HO00267 1087 aaKnown RBP26.64■■□□□ 1.86
CLN5-218ENST00000637397 SHROOM4Q9ULL8 1493 aa26.29■■□□□ 1.8
CLN5-218ENST00000637397 EHMT2Q96KQ7 1210 aa25.46■■□□□ 1.67
CLN5-218ENST00000637397 PCGF6Q9BYE7 350 aa25.42■■□□□ 1.66
CLN5-218ENST00000637397 FAM9AQ8IZU1 332 aaPredicted RBP25.01■■□□□ 1.59
CLN5-218ENST00000637397 TTBK1Q5TCY1 1321 aaPredicted RBP24.67■■□□□ 1.54
CLN5-218ENST00000637397 ZEB1P37275 1124 aaPredicted RBP24.62■■□□□ 1.53
CLN5-218ENST00000637397 HRCP23327 699 aa24.6■■□□□ 1.53
CLN5-218ENST00000637397 TRIM41Q8WV44 630 aa24.58■■□□□ 1.53
CLN5-218ENST00000637397 PELP1Q8IZL8 1130 aaKnown RBP24.48■■□□□ 1.51
CLN5-218ENST00000637397 APLP2Q06481 763 aa24.48■■□□□ 1.51
CLN5-218ENST00000637397 CCER1Q8TC90 406 aaPredicted RBP24.43■■□□□ 1.5
CLN5-218ENST00000637397 CHIC1Q5VXU3 224 aa24.38■■□□□ 1.49
CLN5-218ENST00000637397 CENPBP07199 599 aaPredicted RBP24.37■■□□□ 1.49
CLN5-218ENST00000637397 TRIM26Q12899 539 aaPredicted RBP24.31■■□□□ 1.48
CLN5-218ENST00000637397 LOC105371045A0A1W2PR82 267 aa24.28■■□□□ 1.48
CLN5-218ENST00000637397 PPARGC1BQ86YN6 1023 aaKnown RBP24.23■■□□□ 1.47
CLN5-218ENST00000637397 RANGAP1P46060 587 aaPredicted RBP24.1■■□□□ 1.45
CLN5-218ENST00000637397 UBTFP17480 764 aaKnown RBP24.01■■□□□ 1.43
CLN5-218ENST00000637397 YTHDC1Q96MU7 727 aaKnown RBP24■■□□□ 1.43
CLN5-218ENST00000637397 MYT1Q01538 1121 aa23.64■■□□□ 1.37
CLN5-218ENST00000637397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.6■■□□□ 1.37
CLN5-218ENST00000637397 ATP1B4Q9UN42 357 aaPredicted RBP23.56■■□□□ 1.36
CLN5-218ENST00000637397 ERICH6Q7L0X2 663 aa23.51■■□□□ 1.35
CLN5-218ENST00000637397 HNRNPUL2Q1KMD3 747 aaKnown RBP23.46■■□□□ 1.35
CLN5-218ENST00000637397 DIEXFQ68CQ4 756 aaKnown RBP23.45■■□□□ 1.34
CLN5-218ENST00000637397 NEFLP07196 543 aa23.44■■□□□ 1.34
CLN5-218ENST00000637397 ITGAEP38570 1179 aa23.29■■□□□ 1.32
CLN5-218ENST00000637397 GTF3C3Q9Y5Q9 886 aa23.21■■□□□ 1.31
CLN5-218ENST00000637397 ACIN1Q9UKV3 1341 aaKnown RBP23■■□□□ 1.27
CLN5-218ENST00000637397 DCAF1Q9Y4B6 1507 aa22.98■■□□□ 1.27
CLN5-218ENST00000637397 ZNF316A6NFI3 1004 aaPredicted RBP22.91■■□□□ 1.26
CLN5-218ENST00000637397 MYO15BQ96JP2 1530 aa22.9■■□□□ 1.26
CLN5-218ENST00000637397 ZCCHC6Q5VYS8 1495 aaKnown RBP22.89■■□□□ 1.25
CLN5-218ENST00000637397 ABCC9O60706 1549 aa22.75■■□□□ 1.23
CLN5-218ENST00000637397 POLR3GLQ9BT43 218 aa22.74■■□□□ 1.23
CLN5-218ENST00000637397 BCANQ96GW7 911 aa22.72■■□□□ 1.23
CLN5-218ENST00000637397 CNGB1Q14028 1251 aaPredicted RBP22.72■■□□□ 1.23
CLN5-218ENST00000637397 SCAF1Q9H7N4 1312 aaKnown RBP22.69■■□□□ 1.22
CLN5-218ENST00000637397 CSRNP3Q8WYN3 585 aa22.66■■□□□ 1.22
CLN5-218ENST00000637397 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
CLN5-218ENST00000637397 FAM50AQ14320 339 aaKnown RBP22.66■■□□□ 1.22
CLN5-218ENST00000637397 PABPN1Q86U42 306 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLN5-218ENST00000637397 ANP32CO43423 234 aa22.44■■□□□ 1.18
CLN5-218ENST00000637397 SCRIBQ14160 1630 aa22.42■■□□□ 1.18
CLN5-218ENST00000637397 DAXXQ9UER7 740 aaPredicted RBP22.41■■□□□ 1.18
CLN5-218ENST00000637397 TRIM52Q96A61 297 aa22.36■■□□□ 1.17
CLN5-218ENST00000637397 MIER1Q8N108 512 aa22.3■■□□□ 1.16
CLN5-218ENST00000637397 RTL5Q5HYW3 569 aaPredicted RBP22.28■■□□□ 1.16
CLN5-218ENST00000637397 CDK11AQ9UQ88 783 aaPredicted RBP22.28■■□□□ 1.16
CLN5-218ENST00000637397 CCDC180Q9P1Z9 1646 aa22.24■■□□□ 1.15
CLN5-218ENST00000637397 P3H3Q8IVL6 736 aa22.22■■□□□ 1.15
CLN5-218ENST00000637397 RSF1Q96T23 1441 aaPredicted RBP22.2■■□□□ 1.15
CLN5-218ENST00000637397 FKBP8Q14318 412 aa22.2■■□□□ 1.15
CLN5-218ENST00000637397 CLSPNQ9HAW4 1339 aa22.17■■□□□ 1.14
CLN5-218ENST00000637397 DDX10Q13206 875 aaKnown RBP22.14■■□□□ 1.14
CLN5-218ENST00000637397 ZNF326Q5BKZ1 582 aaKnown RBP22.12■■□□□ 1.13
CLN5-218ENST00000637397 MYT1LQ9UL68 1186 aa22.08■■□□□ 1.13
CLN5-218ENST00000637397 CEP162Q5TB80 1403 aa22.02■■□□□ 1.12
CLN5-218ENST00000637397 HNRNPUQ00839 825 aaKnown RBP eCLIP21.97■■□□□ 1.11
CLN5-218ENST00000637397 CLIP1P30622 1438 aa21.96■■□□□ 1.11
CLN5-218ENST00000637397 TONSLQ96HA7 1378 aa21.94■■□□□ 1.1
CLN5-218ENST00000637397 ARID3CA6NKF2 412 aa21.93■■□□□ 1.1
CLN5-218ENST00000637397 SLC4A1APQ9BWU0 796 aaKnown RBP21.9■■□□□ 1.1
CLN5-218ENST00000637397 HIRIP3Q9BW71 556 aaPredicted RBP21.89■■□□□ 1.09
CLN5-218ENST00000637397 FAM9BQ8IZU0 186 aa21.83■■□□□ 1.08
CLN5-218ENST00000637397 ANP32AP39687 249 aaKnown RBP21.82■■□□□ 1.08
CLN5-218ENST00000637397 TNIKQ9UKE5 1360 aa21.81■■□□□ 1.08
CLN5-218ENST00000637397 GOLGA3Q08378 1498 aa21.81■■□□□ 1.08
CLN5-218ENST00000637397 EEA1Q15075 1411 aa21.8■■□□□ 1.08
CLN5-218ENST00000637397 NPM2Q86SE8 214 aaKnown RBP21.76■■□□□ 1.07
CLN5-218ENST00000637397 IRX6P78412 446 aaPredicted RBP21.75■■□□□ 1.07
CLN5-218ENST00000637397 RB1CC1Q8TDY2 1594 aa21.74■■□□□ 1.07
CLN5-218ENST00000637397 CHIC2Q9UKJ5 165 aa21.69■■□□□ 1.06
CLN5-218ENST00000637397 ZNF777Q9ULD5 760 aaPredicted RBP21.68■■□□□ 1.06
CLN5-218ENST00000637397 WRNQ14191 1432 aaPredicted RBP eCLIP21.67■■□□□ 1.06
CLN5-218ENST00000637397 CECR2Q9BXF3 1484 aa21.66■■□□□ 1.06
CLN5-218ENST00000637397 FBLN2P98095 1184 aa21.66■■□□□ 1.06
CLN5-218ENST00000637397 MRS2Q9HD23 443 aa21.63■■□□□ 1.05
CLN5-218ENST00000637397 SUPT16HQ9Y5B9 1047 aaKnown RBP21.63■■□□□ 1.05
CLN5-218ENST00000637397 CCDC136Q96JN2 1154 aa21.6■■□□□ 1.05
CLN5-218ENST00000637397 SALL2Q9Y467 1007 aaPredicted RBP21.6■■□□□ 1.05
CLN5-218ENST00000637397 NBR1Q14596 966 aa21.59■■□□□ 1.05
CLN5-218ENST00000637397 ANP32EQ9BTT0 268 aa21.59■■□□□ 1.05
CLN5-218ENST00000637397 SOGA1O94964 1423 aa21.59■■□□□ 1.05
CLN5-218ENST00000637397 CEP164Q9UPV0 1460 aa21.58■■□□□ 1.04
CLN5-218ENST00000637397 CANXP27824 592 aaKnown RBP21.54■■□□□ 1.04
CLN5-218ENST00000637397 MTUS2Q5JR59 1369 aa21.53■■□□□ 1.04
CLN5-218ENST00000637397 TMC1Q8TDI8 760 aa21.52■■□□□ 1.04
CLN5-218ENST00000637397 SIN3AQ96ST3 1273 aa21.52■■□□□ 1.04
CLN5-218ENST00000637397 EIF4G2P78344 907 aaKnown RBP eCLIP21.49■■□□□ 1.03
CLN5-218ENST00000637397 ZBTB47Q9UFB7 747 aaPredicted RBP21.49■■□□□ 1.03
CLN5-218ENST00000637397 RRP7BPQ9NSQ0 103 aa21.47■■□□□ 1.03
CLN5-218ENST00000637397 NACADO15069 1562 aa21.43■■□□□ 1.02
CLN5-218ENST00000637397 BAZ1AQ9NRL2 1556 aaPredicted RBP21.41■■□□□ 1.02
CLN5-218ENST00000637397 MROH2BQ7Z745 1585 aa21.4■■□□□ 1.02
CLN5-218ENST00000637397 CCDC88BA6NC98 1476 aa21.39■■□□□ 1.01
CLN5-218ENST00000637397 BCL11AQ9H165 835 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms