RNA–Protein interactions for RNA: ENST00000634435.1

SMARCA2-223, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-223	ENST00000634435	AEBP2	Q6ZN18	517 aa	Predicted RBP	24.41	■■□□□ 1.5
SMARCA2-223	ENST00000634435	CHIC1	Q5VXU3	224 aa		22.83	■■□□□ 1.25
SMARCA2-223	ENST00000634435	SENP3	Q9H4L4	574 aa	Predicted RBP	20.91	■□□□□ 0.94
SMARCA2-223	ENST00000634435	PHF23	Q9BUL5	403 aa	Predicted RBP	20.57	■□□□□ 0.88
SMARCA2-223	ENST00000634435	FOXD1	Q16676	465 aa		19.53	■□□□□ 0.72
SMARCA2-223	ENST00000634435	POTED	Q86YR6	584 aa		18.72	■□□□□ 0.59
SMARCA2-223	ENST00000634435	PLPPR3	Q6T4P5	718 aa		18.67	■□□□□ 0.58
SMARCA2-223	ENST00000634435	MSH5	O43196	834 aa		18.45	■□□□□ 0.54
SMARCA2-223	ENST00000634435	PIAS4	Q8N2W9	510 aa	Predicted RBP	18.16	■□□□□ 0.5
SMARCA2-223	ENST00000634435	PPP6R1	Q9UPN7	881 aa		17.92	■□□□□ 0.46
SMARCA2-223	ENST00000634435	ADRA2B	P18089	450 aa		17.85	■□□□□ 0.45
SMARCA2-223	ENST00000634435	KCNA4	P22459	653 aa		16.91	■□□□□ 0.3
SMARCA2-223	ENST00000634435	EHMT2	Q96KQ7	1210 aa		16.55	■□□□□ 0.24
SMARCA2-223	ENST00000634435	MAPK8IP2	Q13387	824 aa	Predicted RBP	16.52	■□□□□ 0.24
SMARCA2-223	ENST00000634435	PPP4R3CP	Q6ZMV5	832 aa		16.51	■□□□□ 0.23
SMARCA2-223	ENST00000634435	DMRT2	Q9Y5R5	561 aa		16.51	■□□□□ 0.23
SMARCA2-223	ENST00000634435	SCAF1	Q9H7N4	1312 aa	Known RBP	16.36	■□□□□ 0.21
SMARCA2-223	ENST00000634435	NCBP3	Q53F19	620 aa	Known RBP	16.33	■□□□□ 0.2
SMARCA2-223	ENST00000634435	SLC4A1AP	Q9BWU0	796 aa	Known RBP	16.25	■□□□□ 0.19
SMARCA2-223	ENST00000634435	NISCH	Q9Y2I1	1504 aa		16.12	■□□□□ 0.17
SMARCA2-223	ENST00000634435	CACNB1	Q02641	598 aa	Predicted RBP	16.1	■□□□□ 0.17
SMARCA2-223	ENST00000634435	CSRNP3	Q8WYN3	585 aa		16.07	■□□□□ 0.16
SMARCA2-223	ENST00000634435	NPM3	O75607	178 aa	Known RBP	16.05	■□□□□ 0.16
SMARCA2-223	ENST00000634435	CNKSR2	Q8WXI2	1034 aa		15.92	■□□□□ 0.14
SMARCA2-223	ENST00000634435	DCAF8L1	A6NGE4	600 aa		15.87	■□□□□ 0.13
SMARCA2-223	ENST00000634435	HOXD11	P31277	338 aa	Predicted RBP	15.73	■□□□□ 0.11
SMARCA2-223	ENST00000634435	RNF39	Q9H2S5	420 aa		15.69	■□□□□ 0.1
SMARCA2-223	ENST00000634435	DNAJC5B	Q9UF47	199 aa		15.59	■□□□□ 0.09
SMARCA2-223	ENST00000634435	ZBTB22	O15209	634 aa		15.57	■□□□□ 0.08
SMARCA2-223	ENST00000634435	RNF216	Q9NWF9	866 aa	Predicted RBP	15.5	■□□□□ 0.07
SMARCA2-223	ENST00000634435	C1QBP	Q07021	282 aa	Known RBP	15.45	■□□□□ 0.06
SMARCA2-223	ENST00000634435	FOXD4L1	Q9NU39	408 aa		15.41	■□□□□ 0.06
SMARCA2-223	ENST00000634435	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	15.01	□□□□□ -0.01
SMARCA2-223	ENST00000634435	SLC4A2	P04920	1241 aa		14.97	□□□□□ -0.01
SMARCA2-223	ENST00000634435	MYCN	P04198	464 aa	Predicted RBP	14.85	□□□□□ -0.03
SMARCA2-223	ENST00000634435	ATXN8OS	P0DMR3	200 aa		14.85	□□□□□ -0.03
SMARCA2-223	ENST00000634435	ABCC9	O60706	1549 aa		14.76	□□□□□ -0.05
SMARCA2-223	ENST00000634435		U3KPZ7	1027 aa	Predicted RBP	14.63	□□□□□ -0.07
SMARCA2-223	ENST00000634435	POTEH	Q6S545	545 aa		14.59	□□□□□ -0.07
SMARCA2-223	ENST00000634435	CAPN15	O75808	1086 aa		14.56	□□□□□ -0.08
SMARCA2-223	ENST00000634435	DSG3	P32926	999 aa		14.56	□□□□□ -0.08
SMARCA2-223	ENST00000634435	SPINK5	Q9NQ38	1064 aa	Predicted RBP	14.54	□□□□□ -0.08
SMARCA2-223	ENST00000634435	CCDC180	Q9P1Z9	1646 aa		14.52	□□□□□ -0.09
SMARCA2-223	ENST00000634435	AMER1	Q5JTC6	1135 aa	Predicted RBP	14.5	□□□□□ -0.09
SMARCA2-223	ENST00000634435	FKBP8	Q14318	412 aa		14.47	□□□□□ -0.09
SMARCA2-223	ENST00000634435	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	14.42	□□□□□ -0.1
SMARCA2-223	ENST00000634435	HNRNPUL2	Q1KMD3	747 aa	Known RBP	14.42	□□□□□ -0.1
SMARCA2-223	ENST00000634435	RTN4	Q9NQC3	1192 aa	Known RBP	14.42	□□□□□ -0.1
SMARCA2-223	ENST00000634435	SAMD1	Q6SPF0	538 aa	Predicted RBP	14.39	□□□□□ -0.11
SMARCA2-223	ENST00000634435	ATF5	Q9Y2D1	282 aa	Predicted RBP	14.32	□□□□□ -0.12
SMARCA2-223	ENST00000634435	TRH	P20396	242 aa	Predicted RBP	14.22	□□□□□ -0.13
SMARCA2-223	ENST00000634435	SLC24A1	O60721	1099 aa		14.21	□□□□□ -0.13
SMARCA2-223	ENST00000634435	APLP2	Q06481	763 aa		14.21	□□□□□ -0.13
SMARCA2-223	ENST00000634435	ABCB7	O75027	752 aa		14.18	□□□□□ -0.14
SMARCA2-223	ENST00000634435	ZNF219	Q9P2Y4	722 aa	Predicted RBP	14.18	□□□□□ -0.14
SMARCA2-223	ENST00000634435	RB1CC1	Q8TDY2	1594 aa		13.94	□□□□□ -0.18
SMARCA2-223	ENST00000634435	RBM42	Q9BTD8	480 aa	Known RBP	13.91	□□□□□ -0.18
SMARCA2-223	ENST00000634435	FBXO3	Q9UK99	471 aa		13.84	□□□□□ -0.19
SMARCA2-223	ENST00000634435	SPDYE4	A6NLX3	237 aa		13.81	□□□□□ -0.2
SMARCA2-223	ENST00000634435	NACAD	O15069	1562 aa		13.79	□□□□□ -0.2
SMARCA2-223	ENST00000634435	CHRDL2	Q6WN34	429 aa		13.77	□□□□□ -0.21
SMARCA2-223	ENST00000634435	MKRN4P	Q13434	485 aa	Predicted RBP	13.76	□□□□□ -0.21
SMARCA2-223	ENST00000634435	FBLN2	P98095	1184 aa		13.74	□□□□□ -0.21
SMARCA2-223	ENST00000634435	PROM2	Q8N271	834 aa		13.74	□□□□□ -0.21
SMARCA2-223	ENST00000634435	POLA2	Q14181	598 aa		13.73	□□□□□ -0.21
SMARCA2-223	ENST00000634435	DCAF8L2	P0C7V8	631 aa		13.72	□□□□□ -0.21
SMARCA2-223	ENST00000634435	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SMARCA2-223	ENST00000634435	VASP	P50552	380 aa	Predicted RBP	13.59	□□□□□ -0.23
SMARCA2-223	ENST00000634435	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.55	□□□□□ -0.24
SMARCA2-223	ENST00000634435	MYO15B	Q96JP2	1530 aa		13.54	□□□□□ -0.24
SMARCA2-223	ENST00000634435	UNC13A	Q9UPW8	1703 aa		13.51	□□□□□ -0.25
SMARCA2-223	ENST00000634435	BICRA	Q9NZM4	1560 aa		13.5	□□□□□ -0.25
SMARCA2-223	ENST00000634435	AKT1S1	Q96B36	256 aa		13.5	□□□□□ -0.25
SMARCA2-223	ENST00000634435	SP7	Q8TDD2	431 aa	Predicted RBP	13.48	□□□□□ -0.25
SMARCA2-223	ENST00000634435	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.44	□□□□□ -0.26
SMARCA2-223	ENST00000634435	REM2	Q8IYK8	340 aa	Predicted RBP	13.37	□□□□□ -0.27
SMARCA2-223	ENST00000634435	SHROOM4	Q9ULL8	1493 aa		13.36	□□□□□ -0.27
SMARCA2-223	ENST00000634435	PIP4P2	Q8N4L2	257 aa		13.35	□□□□□ -0.27
SMARCA2-223	ENST00000634435	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.35	□□□□□ -0.27
SMARCA2-223	ENST00000634435	PLCB2	Q00722	1185 aa		13.34	□□□□□ -0.27
SMARCA2-223	ENST00000634435	CECR2	Q9BXF3	1484 aa		13.32	□□□□□ -0.28
SMARCA2-223	ENST00000634435	OSCAR	Q8IYS5	282 aa		13.31	□□□□□ -0.28
SMARCA2-223	ENST00000634435	DCAF1	Q9Y4B6	1507 aa		13.29	□□□□□ -0.28
SMARCA2-223	ENST00000634435	CC2D2A	Q9P2K1	1620 aa		13.28	□□□□□ -0.28
SMARCA2-223	ENST00000634435	PKD2	Q13563	968 aa		13.27	□□□□□ -0.29
SMARCA2-223	ENST00000634435	SCRIB	Q14160	1630 aa		13.27	□□□□□ -0.29
SMARCA2-223	ENST00000634435	HAX1	O00165	279 aa		13.23	□□□□□ -0.29
SMARCA2-223	ENST00000634435	PITPNM1	O00562	1244 aa		13.23	□□□□□ -0.29
SMARCA2-223	ENST00000634435	STAG3	Q9UJ98	1225 aa		13.23	□□□□□ -0.29
SMARCA2-223	ENST00000634435	EIF4G1	Q04637	1599 aa	Known RBP	13.23	□□□□□ -0.29
SMARCA2-223	ENST00000634435	ZNF692	Q9BU19	519 aa	Predicted RBP	13.22	□□□□□ -0.29
SMARCA2-223	ENST00000634435	SPDYE2B	A6NHP3	402 aa		13.21	□□□□□ -0.29
SMARCA2-223	ENST00000634435	SPDYE6	P0CI01	402 aa		13.21	□□□□□ -0.29
SMARCA2-223	ENST00000634435	SPDYE2	Q495Y8	402 aa		13.21	□□□□□ -0.29
SMARCA2-223	ENST00000634435	FXR2	P51116	673 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
SMARCA2-223	ENST00000634435	SPOCK2	Q92563	424 aa		13.19	□□□□□ -0.3
SMARCA2-223	ENST00000634435	SSUH2	Q9Y2M2	353 aa		13.18	□□□□□ -0.3
SMARCA2-223	ENST00000634435	KLHL34	Q8N239	644 aa		13.16	□□□□□ -0.3
SMARCA2-223	ENST00000634435	HAP1	P54257	671 aa	Predicted RBP	13.1	□□□□□ -0.31
SMARCA2-223	ENST00000634435	PLCD3	Q8N3E9	789 aa		13.08	□□□□□ -0.32

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