RNA–Protein interactions for RNA: ENST00000568770.5

CDH13-211, Transcript of cadherin 13, humanhuman

TSL 4

Gene CDH13, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-211ENST00000568770 AEBP2Q6ZN18 517 aaPredicted RBP21.42■■□□□ 1.02
CDH13-211ENST00000568770 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
CDH13-211ENST00000568770 PHF23Q9BUL5 403 aaPredicted RBP18.57■□□□□ 0.56
CDH13-211ENST00000568770 SENP3Q9H4L4 574 aaPredicted RBP17.99■□□□□ 0.47
CDH13-211ENST00000568770 PLPPR3Q6T4P5 718 aa17.05■□□□□ 0.32
CDH13-211ENST00000568770 FOXD1Q16676 465 aa16.79■□□□□ 0.28
CDH13-211ENST00000568770 PPP6R1Q9UPN7 881 aa16.36■□□□□ 0.21
CDH13-211ENST00000568770 ADRA2BP18089 450 aa16.31■□□□□ 0.2
CDH13-211ENST00000568770 PIAS4Q8N2W9 510 aaPredicted RBP15.81■□□□□ 0.12
CDH13-211ENST00000568770 MSH5O43196 834 aa15.28■□□□□ 0.04
CDH13-211ENST00000568770 PPP4R3CPQ6ZMV5 832 aa15.11■□□□□ 0.01
CDH13-211ENST00000568770 KCNA4P22459 653 aa15□□□□□ -0.01
CDH13-211ENST00000568770 MAPK8IP2Q13387 824 aaPredicted RBP14.79□□□□□ -0.04
CDH13-211ENST00000568770 SCAF1Q9H7N4 1312 aaKnown RBP14.74□□□□□ -0.05
CDH13-211ENST00000568770 NCBP3Q53F19 620 aaKnown RBP14.65□□□□□ -0.06
CDH13-211ENST00000568770 CNKSR2Q8WXI2 1034 aa14.6□□□□□ -0.07
CDH13-211ENST00000568770 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
CDH13-211ENST00000568770 DMRT2Q9Y5R5 561 aa14.43□□□□□ -0.1
CDH13-211ENST00000568770 NISCHQ9Y2I1 1504 aa14.37□□□□□ -0.11
CDH13-211ENST00000568770 RNF216Q9NWF9 866 aaPredicted RBP14.27□□□□□ -0.13
CDH13-211ENST00000568770 SLC4A1APQ9BWU0 796 aaKnown RBP14.24□□□□□ -0.13
CDH13-211ENST00000568770 HOXD11P31277 338 aaPredicted RBP14.2□□□□□ -0.14
CDH13-211ENST00000568770 EHMT2Q96KQ7 1210 aa14.08□□□□□ -0.16
CDH13-211ENST00000568770 DNAJC5BQ9UF47 199 aa14.03□□□□□ -0.16
CDH13-211ENST00000568770 CSRNP3Q8WYN3 585 aa13.88□□□□□ -0.19
CDH13-211ENST00000568770 ZBTB22O15209 634 aa13.86□□□□□ -0.19
CDH13-211ENST00000568770 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
CDH13-211ENST00000568770 SLC4A2P04920 1241 aa13.76□□□□□ -0.21
CDH13-211ENST00000568770 POTEDQ86YR6 584 aa13.73□□□□□ -0.21
CDH13-211ENST00000568770 FOXD4L1Q9NU39 408 aa13.67□□□□□ -0.22
CDH13-211ENST00000568770 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.51□□□□□ -0.25
CDH13-211ENST00000568770 MYCNP04198 464 aaPredicted RBP13.37□□□□□ -0.27
CDH13-211ENST00000568770 U3KPZ7 1027 aaPredicted RBP13.36□□□□□ -0.27
CDH13-211ENST00000568770 ABCC9O60706 1549 aa13.27□□□□□ -0.29
CDH13-211ENST00000568770 RNF39Q9H2S5 420 aa13.19□□□□□ -0.3
CDH13-211ENST00000568770 ATF5Q9Y2D1 282 aaPredicted RBP13.16□□□□□ -0.3
CDH13-211ENST00000568770 ATXN8OSP0DMR3 200 aa13.13□□□□□ -0.31
CDH13-211ENST00000568770 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
CDH13-211ENST00000568770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.09□□□□□ -0.31
CDH13-211ENST00000568770 HNRNPUL2Q1KMD3 747 aaKnown RBP13.09□□□□□ -0.31
CDH13-211ENST00000568770 CCDC180Q9P1Z9 1646 aa13.06□□□□□ -0.32
CDH13-211ENST00000568770 C1QBPQ07021 282 aaKnown RBP12.98□□□□□ -0.33
CDH13-211ENST00000568770 SPINK5Q9NQ38 1064 aaPredicted RBP12.98□□□□□ -0.33
CDH13-211ENST00000568770 APLP2Q06481 763 aa12.87□□□□□ -0.35
CDH13-211ENST00000568770 TRHP20396 242 aaPredicted RBP12.84□□□□□ -0.35
CDH13-211ENST00000568770 ZNF219Q9P2Y4 722 aaPredicted RBP12.84□□□□□ -0.35
CDH13-211ENST00000568770 CAPN15O75808 1086 aa12.83□□□□□ -0.36
CDH13-211ENST00000568770 CACNB1Q02641 598 aaPredicted RBP12.69□□□□□ -0.38
CDH13-211ENST00000568770 POLA2Q14181 598 aa12.69□□□□□ -0.38
CDH13-211ENST00000568770 ABCB7O75027 752 aa12.67□□□□□ -0.38
CDH13-211ENST00000568770 DSG3P32926 999 aa12.62□□□□□ -0.39
CDH13-211ENST00000568770 MKRN4PQ13434 485 aaPredicted RBP12.57□□□□□ -0.4
CDH13-211ENST00000568770 RB1CC1Q8TDY2 1594 aa12.52□□□□□ -0.4
CDH13-211ENST00000568770 FKBP8Q14318 412 aa12.48□□□□□ -0.41
CDH13-211ENST00000568770 FBLN2P98095 1184 aa12.41□□□□□ -0.42
CDH13-211ENST00000568770 NACADO15069 1562 aa12.37□□□□□ -0.43
CDH13-211ENST00000568770 UNC13AQ9UPW8 1703 aa12.37□□□□□ -0.43
CDH13-211ENST00000568770 ZBTB12Q9Y330 459 aaPredicted RBP12.34□□□□□ -0.43
CDH13-211ENST00000568770 PABPN1Q86U42 306 aaKnown RBP eCLIP12.3□□□□□ -0.44
CDH13-211ENST00000568770 SPDYE4A6NLX3 237 aa12.28□□□□□ -0.44
CDH13-211ENST00000568770 DCAF8L2P0C7V8 631 aa12.24□□□□□ -0.45
CDH13-211ENST00000568770 OSCARQ8IYS5 282 aa12.24□□□□□ -0.45
CDH13-211ENST00000568770 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
CDH13-211ENST00000568770 PROM2Q8N271 834 aa12.12□□□□□ -0.47
CDH13-211ENST00000568770 ZNF692Q9BU19 519 aaPredicted RBP12.11□□□□□ -0.47
CDH13-211ENST00000568770 SPDYE2BA6NHP3 402 aa12.09□□□□□ -0.47
CDH13-211ENST00000568770 SPDYE6P0CI01 402 aa12.09□□□□□ -0.47
CDH13-211ENST00000568770 SPDYE2Q495Y8 402 aa12.09□□□□□ -0.47
CDH13-211ENST00000568770 MYO15BQ96JP2 1530 aa12.09□□□□□ -0.47
CDH13-211ENST00000568770 SSUH2Q9Y2M2 353 aa12.06□□□□□ -0.48
CDH13-211ENST00000568770 CC2D2AQ9P2K1 1620 aa12□□□□□ -0.49
CDH13-211ENST00000568770 CECR2Q9BXF3 1484 aa11.96□□□□□ -0.49
CDH13-211ENST00000568770 SHROOM4Q9ULL8 1493 aa11.94□□□□□ -0.5
CDH13-211ENST00000568770 EIF4G1Q04637 1599 aaKnown RBP11.9□□□□□ -0.5
CDH13-211ENST00000568770 RBM42Q9BTD8 480 aaKnown RBP11.89□□□□□ -0.51
CDH13-211ENST00000568770 FBXO3Q9UK99 471 aa11.88□□□□□ -0.51
CDH13-211ENST00000568770 SCRIBQ14160 1630 aa11.88□□□□□ -0.51
CDH13-211ENST00000568770 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
CDH13-211ENST00000568770 DCAF1Q9Y4B6 1507 aa11.85□□□□□ -0.51
CDH13-211ENST00000568770 AKT1S1Q96B36 256 aa11.84□□□□□ -0.51
CDH13-211ENST00000568770 DNAJC5Q9H3Z4 198 aa11.8□□□□□ -0.52
CDH13-211ENST00000568770 VASPP50552 380 aaPredicted RBP11.79□□□□□ -0.52
CDH13-211ENST00000568770 REM2Q8IYK8 340 aaPredicted RBP11.79□□□□□ -0.52
CDH13-211ENST00000568770 IFNLR1Q8IU57 520 aaPredicted RBP11.72□□□□□ -0.53
CDH13-211ENST00000568770 STAG3Q9UJ98 1225 aa11.71□□□□□ -0.53
CDH13-211ENST00000568770 SPDYE1Q8NFV5 336 aaPredicted RBP11.69□□□□□ -0.54
CDH13-211ENST00000568770 RTN4Q9NQC3 1192 aaKnown RBP11.69□□□□□ -0.54
CDH13-211ENST00000568770 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
CDH13-211ENST00000568770 PITPNM1O00562 1244 aa11.65□□□□□ -0.54
CDH13-211ENST00000568770 MIER1Q8N108 512 aa11.63□□□□□ -0.55
CDH13-211ENST00000568770 PLCD3Q8N3E9 789 aa11.6□□□□□ -0.55
CDH13-211ENST00000568770 AMER1Q5JTC6 1135 aaPredicted RBP11.58□□□□□ -0.56
CDH13-211ENST00000568770 PRR29P0C7W0 189 aa11.57□□□□□ -0.56
CDH13-211ENST00000568770 KLHL34Q8N239 644 aa11.54□□□□□ -0.56
CDH13-211ENST00000568770 CREBZFQ9NS37 354 aa11.53□□□□□ -0.56
CDH13-211ENST00000568770 CUX2O14529 1486 aa11.52□□□□□ -0.56
CDH13-211ENST00000568770 SPOCK2Q92563 424 aa11.47□□□□□ -0.57
CDH13-211ENST00000568770 ERCC6Q03468 1493 aa11.46□□□□□ -0.57
CDH13-211ENST00000568770 MNX1P50219 401 aaPredicted RBP11.46□□□□□ -0.57
CDH13-211ENST00000568770 CHADLQ6NUI6 762 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms