RNA–Protein interactions for RNA: ENST00000568038.1

SMG1-214, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 1,210 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-214ENST00000568038 AEBP2Q6ZN18 517 aaPredicted RBP29.09■■■□□ 2.25
SMG1-214ENST00000568038 CHIC1Q5VXU3 224 aa27.9■■■□□ 2.06
SMG1-214ENST00000568038 SENP3Q9H4L4 574 aaPredicted RBP24.74■■□□□ 1.55
SMG1-214ENST00000568038 PHF23Q9BUL5 403 aaPredicted RBP24.52■■□□□ 1.52
SMG1-214ENST00000568038 FOXD1Q16676 465 aa23.06■■□□□ 1.28
SMG1-214ENST00000568038 PLPPR3Q6T4P5 718 aa22.45■■□□□ 1.18
SMG1-214ENST00000568038 PPP6R1Q9UPN7 881 aa21.82■■□□□ 1.08
SMG1-214ENST00000568038 ADRA2BP18089 450 aa21.81■■□□□ 1.08
SMG1-214ENST00000568038 PIAS4Q8N2W9 510 aaPredicted RBP21.66■■□□□ 1.06
SMG1-214ENST00000568038 MSH5O43196 834 aa21.42■■□□□ 1.02
SMG1-214ENST00000568038 POTEDQ86YR6 584 aa20.43■□□□□ 0.86
SMG1-214ENST00000568038 MAPK8IP2Q13387 824 aaPredicted RBP19.95■□□□□ 0.78
SMG1-214ENST00000568038 SCAF1Q9H7N4 1312 aaKnown RBP19.91■□□□□ 0.78
SMG1-214ENST00000568038 PPP4R3CPQ6ZMV5 832 aa19.75■□□□□ 0.75
SMG1-214ENST00000568038 DMRT2Q9Y5R5 561 aa19.66■□□□□ 0.74
SMG1-214ENST00000568038 CNKSR2Q8WXI2 1034 aa19.27■□□□□ 0.68
SMG1-214ENST00000568038 NCBP3Q53F19 620 aaKnown RBP19.08■□□□□ 0.64
SMG1-214ENST00000568038 HOXD11P31277 338 aaPredicted RBP19.03■□□□□ 0.64
SMG1-214ENST00000568038 DCAF8L1A6NGE4 600 aa19.02■□□□□ 0.64
SMG1-214ENST00000568038 RNF216Q9NWF9 866 aaPredicted RBP19■□□□□ 0.63
SMG1-214ENST00000568038 NPM3O75607 178 aaKnown RBP18.79■□□□□ 0.6
SMG1-214ENST00000568038 KCNA4P22459 653 aa18.74■□□□□ 0.59
SMG1-214ENST00000568038 RNF39Q9H2S5 420 aa18.3■□□□□ 0.52
SMG1-214ENST00000568038 CACNB1Q02641 598 aaPredicted RBP18.29■□□□□ 0.52
SMG1-214ENST00000568038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.26■□□□□ 0.51
SMG1-214ENST00000568038 DNAJC5BQ9UF47 199 aa18.22■□□□□ 0.51
SMG1-214ENST00000568038 NISCHQ9Y2I1 1504 aa18.08■□□□□ 0.49
SMG1-214ENST00000568038 C1QBPQ07021 282 aaKnown RBP18.05■□□□□ 0.48
SMG1-214ENST00000568038 SLC4A2P04920 1241 aa17.85■□□□□ 0.45
SMG1-214ENST00000568038 U3KPZ7 1027 aaPredicted RBP17.84■□□□□ 0.45
SMG1-214ENST00000568038 SLC4A1APQ9BWU0 796 aaKnown RBP17.76■□□□□ 0.43
SMG1-214ENST00000568038 CAPN15O75808 1086 aa17.54■□□□□ 0.4
SMG1-214ENST00000568038 SPINK5Q9NQ38 1064 aaPredicted RBP17.54■□□□□ 0.4
SMG1-214ENST00000568038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.43■□□□□ 0.38
SMG1-214ENST00000568038 HNRNPUL2Q1KMD3 747 aaKnown RBP17.43■□□□□ 0.38
SMG1-214ENST00000568038 APLP2Q06481 763 aa17.37■□□□□ 0.37
SMG1-214ENST00000568038 MYCNP04198 464 aaPredicted RBP17.36■□□□□ 0.37
SMG1-214ENST00000568038 FOXD4L1Q9NU39 408 aa17.36■□□□□ 0.37
SMG1-214ENST00000568038 TRHP20396 242 aaPredicted RBP17.35■□□□□ 0.37
SMG1-214ENST00000568038 SAMD1Q6SPF0 538 aaPredicted RBP17.35■□□□□ 0.37
SMG1-214ENST00000568038 DSG3P32926 999 aa17.28■□□□□ 0.36
SMG1-214ENST00000568038 ZNF219Q9P2Y4 722 aaPredicted RBP17.22■□□□□ 0.35
SMG1-214ENST00000568038 ZBTB22O15209 634 aa17.2■□□□□ 0.34
SMG1-214ENST00000568038 ABCB7O75027 752 aa17.17■□□□□ 0.34
SMG1-214ENST00000568038 ATF5Q9Y2D1 282 aaPredicted RBP16.98■□□□□ 0.31
SMG1-214ENST00000568038 POLA2Q14181 598 aa16.9■□□□□ 0.3
SMG1-214ENST00000568038 EHMT2Q96KQ7 1210 aa16.76■□□□□ 0.27
SMG1-214ENST00000568038 ATXN8OSP0DMR3 200 aa16.73■□□□□ 0.27
SMG1-214ENST00000568038 CSRNP3Q8WYN3 585 aa16.71■□□□□ 0.27
SMG1-214ENST00000568038 ZBTB12Q9Y330 459 aaPredicted RBP16.51■□□□□ 0.23
SMG1-214ENST00000568038 RBM42Q9BTD8 480 aaKnown RBP16.46■□□□□ 0.23
SMG1-214ENST00000568038 OSCARQ8IYS5 282 aa16.34■□□□□ 0.21
SMG1-214ENST00000568038 FBLN2P98095 1184 aa16.3■□□□□ 0.2
SMG1-214ENST00000568038 MKRN4PQ13434 485 aaPredicted RBP16.18■□□□□ 0.18
SMG1-214ENST00000568038 AKT1S1Q96B36 256 aa16.15■□□□□ 0.18
SMG1-214ENST00000568038 POTEHQ6S545 545 aa16.08■□□□□ 0.16
SMG1-214ENST00000568038 SPDYE2BA6NHP3 402 aa16.03■□□□□ 0.16
SMG1-214ENST00000568038 SPDYE6P0CI01 402 aa16.03■□□□□ 0.16
SMG1-214ENST00000568038 SPDYE2Q495Y8 402 aa16.03■□□□□ 0.16
SMG1-214ENST00000568038 REM2Q8IYK8 340 aaPredicted RBP16.03■□□□□ 0.16
SMG1-214ENST00000568038 CHRDL2Q6WN34 429 aa16■□□□□ 0.15
SMG1-214ENST00000568038 ZNF692Q9BU19 519 aaPredicted RBP15.97■□□□□ 0.15
SMG1-214ENST00000568038 CCDC180Q9P1Z9 1646 aa15.9■□□□□ 0.14
SMG1-214ENST00000568038 PITPNM1O00562 1244 aa15.85■□□□□ 0.13
SMG1-214ENST00000568038 SSUH2Q9Y2M2 353 aa15.83■□□□□ 0.12
SMG1-214ENST00000568038 CLEC11AQ9Y240 323 aa15.77■□□□□ 0.12
SMG1-214ENST00000568038 PABPN1Q86U42 306 aaKnown RBP eCLIP15.74■□□□□ 0.11
SMG1-214ENST00000568038 SPDYE1Q8NFV5 336 aaPredicted RBP15.71■□□□□ 0.11
SMG1-214ENST00000568038 PIP4P2Q8N4L2 257 aa15.69■□□□□ 0.1
SMG1-214ENST00000568038 SPDYE4A6NLX3 237 aa15.62■□□□□ 0.09
SMG1-214ENST00000568038 FXR2P51116 673 aaKnown RBP eCLIP15.62■□□□□ 0.09
SMG1-214ENST00000568038 PRR29P0C7W0 189 aa15.5■□□□□ 0.07
SMG1-214ENST00000568038 PRKAR2AP13861 404 aaKnown RBP15.48■□□□□ 0.07
SMG1-214ENST00000568038 CHADLQ6NUI6 762 aa15.42■□□□□ 0.06
SMG1-214ENST00000568038 HAX1O00165 279 aa15.41■□□□□ 0.06
SMG1-214ENST00000568038 ABCC9O60706 1549 aa15.4■□□□□ 0.06
SMG1-214ENST00000568038 STAG3Q9UJ98 1225 aa15.32■□□□□ 0.04
SMG1-214ENST00000568038 SP7Q8TDD2 431 aaPredicted RBP15.21■□□□□ 0.03
SMG1-214ENST00000568038 FKBP8Q14318 412 aa15.2■□□□□ 0.02
SMG1-214ENST00000568038 EVX2Q03828 476 aa15.19■□□□□ 0.02
SMG1-214ENST00000568038 PROM2Q8N271 834 aa15.15■□□□□ 0.02
SMG1-214ENST00000568038 FARP1Q9Y4F1 1045 aaPredicted RBP15.15■□□□□ 0.02
SMG1-214ENST00000568038 CREBZFQ9NS37 354 aa15.14■□□□□ 0.01
SMG1-214ENST00000568038 DCAF8L2P0C7V8 631 aa15.13■□□□□ 0.01
SMG1-214ENST00000568038 C19orf67A6NJJ6 358 aa15.11■□□□□ 0.01
SMG1-214ENST00000568038 ZCCHC6Q5VYS8 1495 aaKnown RBP15.11■□□□□ 0.01
SMG1-214ENST00000568038 CD44P16070 742 aaKnown RBP15.01□□□□□ -0.01
SMG1-214ENST00000568038 DCAF1Q9Y4B6 1507 aa14.92□□□□□ -0.02
SMG1-214ENST00000568038 MIER1Q8N108 512 aa14.92□□□□□ -0.02
SMG1-214ENST00000568038 NACADO15069 1562 aa14.91□□□□□ -0.02
SMG1-214ENST00000568038 NPM1P06748 294 aaKnown RBP eCLIP14.9□□□□□ -0.02
SMG1-214ENST00000568038 MNX1P50219 401 aaPredicted RBP14.88□□□□□ -0.03
SMG1-214ENST00000568038 RB1CC1Q8TDY2 1594 aa14.87□□□□□ -0.03
SMG1-214ENST00000568038 ZRANB1Q9UGI0 708 aa14.87□□□□□ -0.03
SMG1-214ENST00000568038 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
SMG1-214ENST00000568038 GABBR2O75899 941 aa14.85□□□□□ -0.03
SMG1-214ENST00000568038 PLEKHG5O94827 1062 aa14.85□□□□□ -0.03
SMG1-214ENST00000568038 PLCD3Q8N3E9 789 aa14.83□□□□□ -0.04
SMG1-214ENST00000568038 PAK3O75914 559 aaPredicted RBP14.8□□□□□ -0.04
SMG1-214ENST00000568038 FBXO3Q9UK99 471 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms