RNA–Protein interactions for RNA: ENST00000560350.5

USP3-AS1-206, USP3 antisense RNA 1, humanhuman

TSL 2

Gene USP3-AS1, Length 407 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-AS1-206ENST00000560350 AEBP2Q6ZN18 517 aaPredicted RBP28.78■■■□□ 2.2
USP3-AS1-206ENST00000560350 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
USP3-AS1-206ENST00000560350 SENP3Q9H4L4 574 aaPredicted RBP24.48■■□□□ 1.51
USP3-AS1-206ENST00000560350 PHF23Q9BUL5 403 aaPredicted RBP24.18■■□□□ 1.46
USP3-AS1-206ENST00000560350 FOXD1Q16676 465 aa22.82■■□□□ 1.24
USP3-AS1-206ENST00000560350 PLPPR3Q6T4P5 718 aa21.99■■□□□ 1.11
USP3-AS1-206ENST00000560350 PPP6R1Q9UPN7 881 aa21.46■■□□□ 1.03
USP3-AS1-206ENST00000560350 ADRA2BP18089 450 aa21.38■■□□□ 1.01
USP3-AS1-206ENST00000560350 PIAS4Q8N2W9 510 aaPredicted RBP21.33■■□□□ 1.01
USP3-AS1-206ENST00000560350 MSH5O43196 834 aa21.27■■□□□ 1
USP3-AS1-206ENST00000560350 POTEDQ86YR6 584 aa21.15■□□□□ 0.98
USP3-AS1-206ENST00000560350 MAPK8IP2Q13387 824 aaPredicted RBP19.6■□□□□ 0.73
USP3-AS1-206ENST00000560350 SCAF1Q9H7N4 1312 aaKnown RBP19.53■□□□□ 0.72
USP3-AS1-206ENST00000560350 DMRT2Q9Y5R5 561 aa19.46■□□□□ 0.71
USP3-AS1-206ENST00000560350 PPP4R3CPQ6ZMV5 832 aa19.3■□□□□ 0.68
USP3-AS1-206ENST00000560350 CNKSR2Q8WXI2 1034 aa18.9■□□□□ 0.62
USP3-AS1-206ENST00000560350 HOXD11P31277 338 aaPredicted RBP18.81■□□□□ 0.6
USP3-AS1-206ENST00000560350 RNF216Q9NWF9 866 aaPredicted RBP18.7■□□□□ 0.58
USP3-AS1-206ENST00000560350 DCAF8L1A6NGE4 600 aa18.58■□□□□ 0.56
USP3-AS1-206ENST00000560350 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.56
USP3-AS1-206ENST00000560350 NPM3O75607 178 aaKnown RBP18.35■□□□□ 0.53
USP3-AS1-206ENST00000560350 RNF39Q9H2S5 420 aa18.19■□□□□ 0.5
USP3-AS1-206ENST00000560350 KCNA4P22459 653 aa18.14■□□□□ 0.49
USP3-AS1-206ENST00000560350 DNAJC5BQ9UF47 199 aa18.14■□□□□ 0.49
USP3-AS1-206ENST00000560350 CACNB1Q02641 598 aaPredicted RBP18.13■□□□□ 0.49
USP3-AS1-206ENST00000560350 NISCHQ9Y2I1 1504 aa18.09■□□□□ 0.49
USP3-AS1-206ENST00000560350 C1QBPQ07021 282 aaKnown RBP17.91■□□□□ 0.46
USP3-AS1-206ENST00000560350 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.86■□□□□ 0.45
USP3-AS1-206ENST00000560350 U3KPZ7 1027 aaPredicted RBP17.56■□□□□ 0.4
USP3-AS1-206ENST00000560350 SLC4A2P04920 1241 aa17.5■□□□□ 0.39
USP3-AS1-206ENST00000560350 SPINK5Q9NQ38 1064 aaPredicted RBP17.25■□□□□ 0.35
USP3-AS1-206ENST00000560350 CAPN15O75808 1086 aa17.17■□□□□ 0.34
USP3-AS1-206ENST00000560350 SLC4A1APQ9BWU0 796 aaKnown RBP17.13■□□□□ 0.33
USP3-AS1-206ENST00000560350 DSG3P32926 999 aa17.08■□□□□ 0.32
USP3-AS1-206ENST00000560350 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.07■□□□□ 0.32
USP3-AS1-206ENST00000560350 HNRNPUL2Q1KMD3 747 aaKnown RBP17.07■□□□□ 0.32
USP3-AS1-206ENST00000560350 APLP2Q06481 763 aa17.03■□□□□ 0.32
USP3-AS1-206ENST00000560350 SAMD1Q6SPF0 538 aaPredicted RBP16.99■□□□□ 0.31
USP3-AS1-206ENST00000560350 MYCNP04198 464 aaPredicted RBP16.96■□□□□ 0.31
USP3-AS1-206ENST00000560350 TRHP20396 242 aaPredicted RBP16.94■□□□□ 0.3
USP3-AS1-206ENST00000560350 ZNF219Q9P2Y4 722 aaPredicted RBP16.93■□□□□ 0.3
USP3-AS1-206ENST00000560350 FOXD4L1Q9NU39 408 aa16.86■□□□□ 0.29
USP3-AS1-206ENST00000560350 ABCB7O75027 752 aa16.8■□□□□ 0.28
USP3-AS1-206ENST00000560350 ZBTB22O15209 634 aa16.7■□□□□ 0.26
USP3-AS1-206ENST00000560350 ATF5Q9Y2D1 282 aaPredicted RBP16.58■□□□□ 0.24
USP3-AS1-206ENST00000560350 POLA2Q14181 598 aa16.53■□□□□ 0.24
USP3-AS1-206ENST00000560350 POTEHQ6S545 545 aa16.41■□□□□ 0.22
USP3-AS1-206ENST00000560350 ATXN8OSP0DMR3 200 aa16.34■□□□□ 0.21
USP3-AS1-206ENST00000560350 RBM42Q9BTD8 480 aaKnown RBP16.26■□□□□ 0.19
USP3-AS1-206ENST00000560350 ZBTB12Q9Y330 459 aaPredicted RBP16.21■□□□□ 0.19
USP3-AS1-206ENST00000560350 CSRNP3Q8WYN3 585 aa16.06■□□□□ 0.16
USP3-AS1-206ENST00000560350 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
USP3-AS1-206ENST00000560350 CCDC180Q9P1Z9 1646 aa15.98■□□□□ 0.15
USP3-AS1-206ENST00000560350 AKT1S1Q96B36 256 aa15.94■□□□□ 0.14
USP3-AS1-206ENST00000560350 EHMT2Q96KQ7 1210 aa15.89■□□□□ 0.13
USP3-AS1-206ENST00000560350 FBLN2P98095 1184 aa15.86■□□□□ 0.13
USP3-AS1-206ENST00000560350 CHRDL2Q6WN34 429 aa15.85■□□□□ 0.13
USP3-AS1-206ENST00000560350 MKRN4PQ13434 485 aaPredicted RBP15.83■□□□□ 0.12
USP3-AS1-206ENST00000560350 ABCC9O60706 1549 aa15.8■□□□□ 0.12
USP3-AS1-206ENST00000560350 REM2Q8IYK8 340 aaPredicted RBP15.79■□□□□ 0.12
USP3-AS1-206ENST00000560350 SPDYE2BA6NHP3 402 aa15.73■□□□□ 0.11
USP3-AS1-206ENST00000560350 SPDYE6P0CI01 402 aa15.73■□□□□ 0.11
USP3-AS1-206ENST00000560350 SPDYE2Q495Y8 402 aa15.73■□□□□ 0.11
USP3-AS1-206ENST00000560350 PITPNM1O00562 1244 aa15.63■□□□□ 0.09
USP3-AS1-206ENST00000560350 SSUH2Q9Y2M2 353 aa15.57■□□□□ 0.08
USP3-AS1-206ENST00000560350 ZNF692Q9BU19 519 aaPredicted RBP15.55■□□□□ 0.08
USP3-AS1-206ENST00000560350 PIP4P2Q8N4L2 257 aa15.53■□□□□ 0.08
USP3-AS1-206ENST00000560350 FXR2P51116 673 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP3-AS1-206ENST00000560350 SPDYE1Q8NFV5 336 aaPredicted RBP15.41■□□□□ 0.06
USP3-AS1-206ENST00000560350 CLEC11AQ9Y240 323 aa15.35■□□□□ 0.05
USP3-AS1-206ENST00000560350 PABPN1Q86U42 306 aaKnown RBP eCLIP15.34■□□□□ 0.05
USP3-AS1-206ENST00000560350 DCAF8L2P0C7V8 631 aa15.29■□□□□ 0.04
USP3-AS1-206ENST00000560350 PRKAR2AP13861 404 aaKnown RBP15.21■□□□□ 0.03
USP3-AS1-206ENST00000560350 NACADO15069 1562 aa15.19■□□□□ 0.02
USP3-AS1-206ENST00000560350 RB1CC1Q8TDY2 1594 aa15.18■□□□□ 0.02
USP3-AS1-206ENST00000560350 HAX1O00165 279 aa15.16■□□□□ 0.02
USP3-AS1-206ENST00000560350 SP7Q8TDD2 431 aaPredicted RBP15.16■□□□□ 0.02
USP3-AS1-206ENST00000560350 MYO15BQ96JP2 1530 aa15.14■□□□□ 0.01
USP3-AS1-206ENST00000560350 SPDYE4A6NLX3 237 aa15.12■□□□□ 0.01
USP3-AS1-206ENST00000560350 PRR29P0C7W0 189 aa15.12■□□□□ 0.01
USP3-AS1-206ENST00000560350 CHADLQ6NUI6 762 aa15.07■□□□□ 0
USP3-AS1-206ENST00000560350 EVX2Q03828 476 aa15.04■□□□□ -0
USP3-AS1-206ENST00000560350 ZCCHC6Q5VYS8 1495 aaKnown RBP15.02■□□□□ -0
USP3-AS1-206ENST00000560350 DCAF1Q9Y4B6 1507 aa15.02□□□□□ -0.01
USP3-AS1-206ENST00000560350 C19orf67A6NJJ6 358 aa14.97□□□□□ -0.01
USP3-AS1-206ENST00000560350 STAG3Q9UJ98 1225 aa14.93□□□□□ -0.02
USP3-AS1-206ENST00000560350 FARP1Q9Y4F1 1045 aaPredicted RBP14.87□□□□□ -0.03
USP3-AS1-206ENST00000560350 PROM2Q8N271 834 aa14.84□□□□□ -0.03
USP3-AS1-206ENST00000560350 CREBZFQ9NS37 354 aa14.84□□□□□ -0.03
USP3-AS1-206ENST00000560350 CD44P16070 742 aaKnown RBP14.73□□□□□ -0.05
USP3-AS1-206ENST00000560350 GABBR2O75899 941 aa14.69□□□□□ -0.06
USP3-AS1-206ENST00000560350 SHROOM4Q9ULL8 1493 aa14.65□□□□□ -0.06
USP3-AS1-206ENST00000560350 MNX1P50219 401 aaPredicted RBP14.63□□□□□ -0.07
USP3-AS1-206ENST00000560350 BICRAQ9NZM4 1560 aa14.63□□□□□ -0.07
USP3-AS1-206ENST00000560350 SCRIBQ14160 1630 aa14.55□□□□□ -0.08
USP3-AS1-206ENST00000560350 ZNF579Q8NAF0 562 aaKnown RBP14.54□□□□□ -0.08
USP3-AS1-206ENST00000560350 ZRANB1Q9UGI0 708 aa14.54□□□□□ -0.08
USP3-AS1-206ENST00000560350 UNC13AQ9UPW8 1703 aa14.52□□□□□ -0.08
USP3-AS1-206ENST00000560350 NPM1P06748 294 aaKnown RBP eCLIP14.52□□□□□ -0.09
USP3-AS1-206ENST00000560350 FKBP8Q14318 412 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms