RNA–Protein interactions for RNA: ENST00000558016.1

IDH3A-204, Transcript of isocitrate dehydrogenase 3 (NAD(+)) alpha, humanhuman

TSL 2

Gene IDH3A, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IDH3A-204ENST00000558016 AEBP2Q6ZN18 517 aaPredicted RBP22.32■■□□□ 1.16
IDH3A-204ENST00000558016 CHIC1Q5VXU3 224 aa21.33■■□□□ 1.01
IDH3A-204ENST00000558016 SENP3Q9H4L4 574 aaPredicted RBP18.99■□□□□ 0.63
IDH3A-204ENST00000558016 PHF23Q9BUL5 403 aaPredicted RBP18.8■□□□□ 0.6
IDH3A-204ENST00000558016 FOXD1Q16676 465 aa17.71■□□□□ 0.43
IDH3A-204ENST00000558016 PLPPR3Q6T4P5 718 aa17.13■□□□□ 0.33
IDH3A-204ENST00000558016 PPP6R1Q9UPN7 881 aa16.7■□□□□ 0.26
IDH3A-204ENST00000558016 ADRA2BP18089 450 aa16.67■□□□□ 0.26
IDH3A-204ENST00000558016 PIAS4Q8N2W9 510 aaPredicted RBP16.6■□□□□ 0.25
IDH3A-204ENST00000558016 MSH5O43196 834 aa16.48■□□□□ 0.23
IDH3A-204ENST00000558016 POTEDQ86YR6 584 aa15.83■□□□□ 0.12
IDH3A-204ENST00000558016 MAPK8IP2Q13387 824 aaPredicted RBP15.27■□□□□ 0.04
IDH3A-204ENST00000558016 NISCHQ9Y2I1 1504 aa15.27■□□□□ 0.03
IDH3A-204ENST00000558016 SCAF1Q9H7N4 1312 aaKnown RBP15.21■□□□□ 0.03
IDH3A-204ENST00000558016 DMRT2Q9Y5R5 561 aa15.08■□□□□ 0
IDH3A-204ENST00000558016 PPP4R3CPQ6ZMV5 832 aa15.06■□□□□ 0
IDH3A-204ENST00000558016 CNKSR2Q8WXI2 1034 aa14.71□□□□□ -0.05
IDH3A-204ENST00000558016 HOXD11P31277 338 aaPredicted RBP14.58□□□□□ -0.08
IDH3A-204ENST00000558016 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
IDH3A-204ENST00000558016 RNF216Q9NWF9 866 aaPredicted RBP14.52□□□□□ -0.09
IDH3A-204ENST00000558016 NCBP3Q53F19 620 aaKnown RBP14.51□□□□□ -0.09
IDH3A-204ENST00000558016 NPM3O75607 178 aaKnown RBP14.32□□□□□ -0.12
IDH3A-204ENST00000558016 KCNA4P22459 653 aa14.2□□□□□ -0.14
IDH3A-204ENST00000558016 CACNB1Q02641 598 aaPredicted RBP14.09□□□□□ -0.15
IDH3A-204ENST00000558016 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
IDH3A-204ENST00000558016 DNAJC5BQ9UF47 199 aa13.98□□□□□ -0.17
IDH3A-204ENST00000558016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.95□□□□□ -0.18
IDH3A-204ENST00000558016 C1QBPQ07021 282 aaKnown RBP13.87□□□□□ -0.19
IDH3A-204ENST00000558016 CCDC180Q9P1Z9 1646 aa13.67□□□□□ -0.22
IDH3A-204ENST00000558016 U3KPZ7 1027 aaPredicted RBP13.65□□□□□ -0.22
IDH3A-204ENST00000558016 SLC4A2P04920 1241 aa13.62□□□□□ -0.23
IDH3A-204ENST00000558016 ABCC9O60706 1549 aa13.58□□□□□ -0.24
IDH3A-204ENST00000558016 SLC4A1APQ9BWU0 796 aaKnown RBP13.44□□□□□ -0.26
IDH3A-204ENST00000558016 SPINK5Q9NQ38 1064 aaPredicted RBP13.43□□□□□ -0.26
IDH3A-204ENST00000558016 CAPN15O75808 1086 aa13.42□□□□□ -0.26
IDH3A-204ENST00000558016 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.3□□□□□ -0.28
IDH3A-204ENST00000558016 HNRNPUL2Q1KMD3 747 aaKnown RBP13.3□□□□□ -0.28
IDH3A-204ENST00000558016 APLP2Q06481 763 aa13.26□□□□□ -0.29
IDH3A-204ENST00000558016 TRHP20396 242 aaPredicted RBP13.25□□□□□ -0.29
IDH3A-204ENST00000558016 DSG3P32926 999 aa13.25□□□□□ -0.29
IDH3A-204ENST00000558016 SAMD1Q6SPF0 538 aaPredicted RBP13.24□□□□□ -0.29
IDH3A-204ENST00000558016 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
IDH3A-204ENST00000558016 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
IDH3A-204ENST00000558016 ZNF219Q9P2Y4 722 aaPredicted RBP13.17□□□□□ -0.3
IDH3A-204ENST00000558016 ABCB7O75027 752 aa13.13□□□□□ -0.31
IDH3A-204ENST00000558016 ZBTB22O15209 634 aa13.05□□□□□ -0.32
IDH3A-204ENST00000558016 RB1CC1Q8TDY2 1594 aa12.98□□□□□ -0.33
IDH3A-204ENST00000558016 DCAF8L2P0C7V8 631 aa12.95□□□□□ -0.34
IDH3A-204ENST00000558016 ATF5Q9Y2D1 282 aaPredicted RBP12.95□□□□□ -0.34
IDH3A-204ENST00000558016 POLA2Q14181 598 aa12.91□□□□□ -0.34
IDH3A-204ENST00000558016 NACADO15069 1562 aa12.88□□□□□ -0.35
IDH3A-204ENST00000558016 ATXN8OSP0DMR3 200 aa12.72□□□□□ -0.37
IDH3A-204ENST00000558016 ZCCHC6Q5VYS8 1495 aaKnown RBP12.71□□□□□ -0.38
IDH3A-204ENST00000558016 MYO15BQ96JP2 1530 aa12.68□□□□□ -0.38
IDH3A-204ENST00000558016 PABPN1Q86U42 306 aaKnown RBP eCLIP12.63□□□□□ -0.39
IDH3A-204ENST00000558016 RBM42Q9BTD8 480 aaKnown RBP12.62□□□□□ -0.39
IDH3A-204ENST00000558016 CSRNP3Q8WYN3 585 aa12.61□□□□□ -0.39
IDH3A-204ENST00000558016 ZBTB12Q9Y330 459 aaPredicted RBP12.61□□□□□ -0.39
IDH3A-204ENST00000558016 EHMT2Q96KQ7 1210 aa12.59□□□□□ -0.39
IDH3A-204ENST00000558016 DCAF1Q9Y4B6 1507 aa12.58□□□□□ -0.4
IDH3A-204ENST00000558016 UNC13AQ9UPW8 1703 aa12.58□□□□□ -0.4
IDH3A-204ENST00000558016 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
IDH3A-204ENST00000558016 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
IDH3A-204ENST00000558016 BICRAQ9NZM4 1560 aa12.48□□□□□ -0.41
IDH3A-204ENST00000558016 POTEHQ6S545 545 aa12.44□□□□□ -0.42
IDH3A-204ENST00000558016 SHROOM4Q9ULL8 1493 aa12.41□□□□□ -0.42
IDH3A-204ENST00000558016 FBLN2P98095 1184 aa12.41□□□□□ -0.42
IDH3A-204ENST00000558016 AKT1S1Q96B36 256 aa12.37□□□□□ -0.43
IDH3A-204ENST00000558016 MKRN4PQ13434 485 aaPredicted RBP12.33□□□□□ -0.44
IDH3A-204ENST00000558016 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
IDH3A-204ENST00000558016 REM2Q8IYK8 340 aaPredicted RBP12.28□□□□□ -0.44
IDH3A-204ENST00000558016 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
IDH3A-204ENST00000558016 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
IDH3A-204ENST00000558016 EIF4G1Q04637 1599 aaKnown RBP12.24□□□□□ -0.45
IDH3A-204ENST00000558016 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
IDH3A-204ENST00000558016 CC2D2AQ9P2K1 1620 aa12.23□□□□□ -0.45
IDH3A-204ENST00000558016 CECR2Q9BXF3 1484 aa12.21□□□□□ -0.46
IDH3A-204ENST00000558016 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
IDH3A-204ENST00000558016 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
IDH3A-204ENST00000558016 SSUH2Q9Y2M2 353 aa12.09□□□□□ -0.47
IDH3A-204ENST00000558016 PIP4P2Q8N4L2 257 aa12.05□□□□□ -0.48
IDH3A-204ENST00000558016 CLEC11AQ9Y240 323 aa12.04□□□□□ -0.48
IDH3A-204ENST00000558016 SPDYE1Q8NFV5 336 aaPredicted RBP12□□□□□ -0.49
IDH3A-204ENST00000558016 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
IDH3A-204ENST00000558016 SMARCA4P51532 1647 aa11.91□□□□□ -0.5
IDH3A-204ENST00000558016 SMARCA2P51531 1590 aa11.89□□□□□ -0.51
IDH3A-204ENST00000558016 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
IDH3A-204ENST00000558016 ATAD2BQ9ULI0 1458 aa11.86□□□□□ -0.51
IDH3A-204ENST00000558016 SPDYE4A6NLX3 237 aa11.85□□□□□ -0.51
IDH3A-204ENST00000558016 PRKAR2AP13861 404 aaKnown RBP11.85□□□□□ -0.51
IDH3A-204ENST00000558016 NCAPD3P42695 1498 aa11.83□□□□□ -0.52
IDH3A-204ENST00000558016 BAZ1BQ9UIG0 1483 aaKnown RBP11.83□□□□□ -0.52
IDH3A-204ENST00000558016 HMGXB3Q12766 1538 aa11.83□□□□□ -0.52
IDH3A-204ENST00000558016 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
IDH3A-204ENST00000558016 HAX1O00165 279 aa11.82□□□□□ -0.52
IDH3A-204ENST00000558016 ERCC6Q03468 1493 aa11.79□□□□□ -0.52
IDH3A-204ENST00000558016 CHADLQ6NUI6 762 aa11.78□□□□□ -0.52
IDH3A-204ENST00000558016 MROH2BQ7Z745 1585 aa11.76□□□□□ -0.53
IDH3A-204ENST00000558016 SP7Q8TDD2 431 aaPredicted RBP11.73□□□□□ -0.53
IDH3A-204ENST00000558016 PEG3Q9GZU2 1588 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms