RNA–Protein interactions for RNA: ENST00000556170.5

NEK9-209, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 3,975 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-209ENST00000556170 NISCHQ9Y2I1 1504 aa28.84■■■□□ 2.21
NEK9-209ENST00000556170 DCAF8L2P0C7V8 631 aa26.47■■□□□ 1.83
NEK9-209ENST00000556170 SHROOM4Q9ULL8 1493 aa26.16■■□□□ 1.78
NEK9-209ENST00000556170 SUPT5HO00267 1087 aaKnown RBP25.93■■□□□ 1.74
NEK9-209ENST00000556170 EHMT2Q96KQ7 1210 aa24.48■■□□□ 1.51
NEK9-209ENST00000556170 CHIC1Q5VXU3 224 aa24.24■■□□□ 1.47
NEK9-209ENST00000556170 FAM9AQ8IZU1 332 aaPredicted RBP24.22■■□□□ 1.47
NEK9-209ENST00000556170 PCGF6Q9BYE7 350 aa24.17■■□□□ 1.46
NEK9-209ENST00000556170 ZCCHC6Q5VYS8 1495 aaKnown RBP24.14■■□□□ 1.46
NEK9-209ENST00000556170 LOC105371045A0A1W2PR82 267 aa23.99■■□□□ 1.43
NEK9-209ENST00000556170 TRIM41Q8WV44 630 aa23.91■■□□□ 1.42
NEK9-209ENST00000556170 CCDC180Q9P1Z9 1646 aa23.85■■□□□ 1.41
NEK9-209ENST00000556170 ABCC9O60706 1549 aa23.79■■□□□ 1.4
NEK9-209ENST00000556170 TTBK1Q5TCY1 1321 aaPredicted RBP23.58■■□□□ 1.37
NEK9-209ENST00000556170 PPARGC1BQ86YN6 1023 aaKnown RBP23.51■■□□□ 1.35
NEK9-209ENST00000556170 MYO15BQ96JP2 1530 aa23.44■■□□□ 1.34
NEK9-209ENST00000556170 HRCP23327 699 aa23.42■■□□□ 1.34
NEK9-209ENST00000556170 SCRIBQ14160 1630 aa23.38■■□□□ 1.33
NEK9-209ENST00000556170 PABPN1Q86U42 306 aaKnown RBP eCLIP23.27■■□□□ 1.32
NEK9-209ENST00000556170 TRIM26Q12899 539 aaPredicted RBP23.25■■□□□ 1.31
NEK9-209ENST00000556170 RANGAP1P46060 587 aaPredicted RBP23.24■■□□□ 1.31
NEK9-209ENST00000556170 UBTFP17480 764 aaKnown RBP23.13■■□□□ 1.29
NEK9-209ENST00000556170 RSF1Q96T23 1441 aaPredicted RBP23.06■■□□□ 1.28
NEK9-209ENST00000556170 DCAF1Q9Y4B6 1507 aa23.04■■□□□ 1.28
NEK9-209ENST00000556170 CCER1Q8TC90 406 aaPredicted RBP22.95■■□□□ 1.26
NEK9-209ENST00000556170 APLP2Q06481 763 aa22.87■■□□□ 1.25
NEK9-209ENST00000556170 CECR2Q9BXF3 1484 aa22.84■■□□□ 1.25
NEK9-209ENST00000556170 ZEB1P37275 1124 aaPredicted RBP22.82■■□□□ 1.24
NEK9-209ENST00000556170 PELP1Q8IZL8 1130 aaKnown RBP22.77■■□□□ 1.24
NEK9-209ENST00000556170 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.74■■□□□ 1.23
NEK9-209ENST00000556170 NACADO15069 1562 aa22.62■■□□□ 1.21
NEK9-209ENST00000556170 RB1CC1Q8TDY2 1594 aa22.6■■□□□ 1.21
NEK9-209ENST00000556170 MROH2BQ7Z745 1585 aa22.55■■□□□ 1.2
NEK9-209ENST00000556170 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
NEK9-209ENST00000556170 CSRNP3Q8WYN3 585 aa22.48■■□□□ 1.19
NEK9-209ENST00000556170 ATP1B4Q9UN42 357 aaPredicted RBP22.46■■□□□ 1.19
NEK9-209ENST00000556170 ITGAEP38570 1179 aa22.31■■□□□ 1.16
NEK9-209ENST00000556170 WIZO95785 1651 aa22.3■■□□□ 1.16
NEK9-209ENST00000556170 BAZ1AQ9NRL2 1556 aaPredicted RBP22.25■■□□□ 1.15
NEK9-209ENST00000556170 YTHDC1Q96MU7 727 aaKnown RBP22.23■■□□□ 1.15
NEK9-209ENST00000556170 MYT1Q01538 1121 aa22.2■■□□□ 1.14
NEK9-209ENST00000556170 ABCC8Q09428 1581 aa22.14■■□□□ 1.13
NEK9-209ENST00000556170 CCDC88BA6NC98 1476 aa22.13■■□□□ 1.13
NEK9-209ENST00000556170 SOGA1O94964 1423 aa22.13■■□□□ 1.13
NEK9-209ENST00000556170 DIEXFQ68CQ4 756 aaKnown RBP22.08■■□□□ 1.13
NEK9-209ENST00000556170 CENPBP07199 599 aaPredicted RBP22.05■■□□□ 1.12
NEK9-209ENST00000556170 CEP162Q5TB80 1403 aa22.03■■□□□ 1.12
NEK9-209ENST00000556170 WRNQ14191 1432 aaPredicted RBP eCLIP22.01■■□□□ 1.11
NEK9-209ENST00000556170 P3H3Q8IVL6 736 aa21.94■■□□□ 1.1
NEK9-209ENST00000556170 BAZ1BQ9UIG0 1483 aaKnown RBP21.91■■□□□ 1.1
NEK9-209ENST00000556170 TNIKQ9UKE5 1360 aa21.86■■□□□ 1.09
NEK9-209ENST00000556170 RUSC2Q8N2Y8 1516 aa21.86■■□□□ 1.09
NEK9-209ENST00000556170 TOP2AP11388 1531 aaKnown RBP21.86■■□□□ 1.09
NEK9-209ENST00000556170 CLIP1P30622 1438 aa21.84■■□□□ 1.09
NEK9-209ENST00000556170 SMARCA4P51532 1647 aa21.83■■□□□ 1.09
NEK9-209ENST00000556170 FAM50AQ14320 339 aaKnown RBP21.8■■□□□ 1.08
NEK9-209ENST00000556170 GOLGA3Q08378 1498 aa21.8■■□□□ 1.08
NEK9-209ENST00000556170 EEA1Q15075 1411 aa21.77■■□□□ 1.08
NEK9-209ENST00000556170 ZNF316A6NFI3 1004 aaPredicted RBP21.76■■□□□ 1.07
NEK9-209ENST00000556170 SMARCA2P51531 1590 aa21.68■■□□□ 1.06
NEK9-209ENST00000556170 NEUROD1Q13562 356 aa21.65■■□□□ 1.06
NEK9-209ENST00000556170 CEP164Q9UPV0 1460 aa21.64■■□□□ 1.06
NEK9-209ENST00000556170 ATAD2BQ9ULI0 1458 aa21.64■■□□□ 1.05
NEK9-209ENST00000556170 GTF3C3Q9Y5Q9 886 aa21.62■■□□□ 1.05
NEK9-209ENST00000556170 ARID3CA6NKF2 412 aa21.59■■□□□ 1.05
NEK9-209ENST00000556170 ACIN1Q9UKV3 1341 aaKnown RBP21.55■■□□□ 1.04
NEK9-209ENST00000556170 SCAF1Q9H7N4 1312 aaKnown RBP21.54■■□□□ 1.04
NEK9-209ENST00000556170 KANK4Q5T7N3 995 aaPredicted RBP21.48■■□□□ 1.03
NEK9-209ENST00000556170 RAPGEF2Q9Y4G8 1499 aa21.48■■□□□ 1.03
NEK9-209ENST00000556170 KIF27Q86VH2 1401 aa21.46■■□□□ 1.03
NEK9-209ENST00000556170 MIER1Q8N108 512 aa21.44■■□□□ 1.02
NEK9-209ENST00000556170 VPS8Q8N3P4 1428 aa21.4■■□□□ 1.02
NEK9-209ENST00000556170 BICRAQ9NZM4 1560 aa21.34■■□□□ 1.01
NEK9-209ENST00000556170 CNGB1Q14028 1251 aaPredicted RBP21.33■■□□□ 1.01
NEK9-209ENST00000556170 FBLN2P98095 1184 aa21.33■■□□□ 1.01
NEK9-209ENST00000556170 CUX2O14529 1486 aa21.33■■□□□ 1.01
NEK9-209ENST00000556170 TRIM52Q96A61 297 aa21.32■■□□□ 1
NEK9-209ENST00000556170 SYNJ1O43426 1573 aa21.28■■□□□ 1
NEK9-209ENST00000556170 HIRIP3Q9BW71 556 aaPredicted RBP21.28■■□□□ 1
NEK9-209ENST00000556170 CARMIL1Q5VZK9 1371 aa21.25■□□□□ 0.99
NEK9-209ENST00000556170 POLR3GLQ9BT43 218 aa21.22■□□□□ 0.99
NEK9-209ENST00000556170 CHIC2Q9UKJ5 165 aa21.21■□□□□ 0.99
NEK9-209ENST00000556170 UNC13AQ9UPW8 1703 aa21.21■□□□□ 0.99
NEK9-209ENST00000556170 DDX10Q13206 875 aaKnown RBP21.17■□□□□ 0.98
NEK9-209ENST00000556170 SIN3AQ96ST3 1273 aa21.15■□□□□ 0.98
NEK9-209ENST00000556170 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
NEK9-209ENST00000556170 CCNB3Q8WWL7 1395 aa21.13■□□□□ 0.97
NEK9-209ENST00000556170 MTUS2Q5JR59 1369 aa21.11■□□□□ 0.97
NEK9-209ENST00000556170 BCANQ96GW7 911 aa21.1■□□□□ 0.97
NEK9-209ENST00000556170 NEFLP07196 543 aa21.09■□□□□ 0.97
NEK9-209ENST00000556170 EIF4G1Q04637 1599 aaKnown RBP21.09■□□□□ 0.97
NEK9-209ENST00000556170 NCAPD3P42695 1498 aa21.09■□□□□ 0.97
NEK9-209ENST00000556170 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.96
NEK9-209ENST00000556170 ZNF777Q9ULD5 760 aaPredicted RBP21.05■□□□□ 0.96
NEK9-209ENST00000556170 RRP7BPQ9NSQ0 103 aa21.05■□□□□ 0.96
NEK9-209ENST00000556170 ZNF326Q5BKZ1 582 aaKnown RBP21.03■□□□□ 0.96
NEK9-209ENST00000556170 KIF21BO75037 1637 aa21.02■□□□□ 0.96
NEK9-209ENST00000556170 IGF1RP08069 1367 aa21.02■□□□□ 0.96
NEK9-209ENST00000556170 ANP32CO43423 234 aa20.99■□□□□ 0.95
NEK9-209ENST00000556170 TONSLQ96HA7 1378 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms