RNA–Protein interactions for RNA: ENST00000549040.5

RFX4-208, Transcript of regulatory factor X4, humanhuman

TSL 4

Gene RFX4, Length 473 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-208ENST00000549040 AEBP2Q6ZN18 517 aaPredicted RBP26.03■■□□□ 1.76
RFX4-208ENST00000549040 CHIC1Q5VXU3 224 aa25.16■■□□□ 1.62
RFX4-208ENST00000549040 SENP3Q9H4L4 574 aaPredicted RBP22.16■■□□□ 1.14
RFX4-208ENST00000549040 PHF23Q9BUL5 403 aaPredicted RBP22.1■■□□□ 1.13
RFX4-208ENST00000549040 FOXD1Q16676 465 aa20.59■□□□□ 0.89
RFX4-208ENST00000549040 PLPPR3Q6T4P5 718 aa20.32■□□□□ 0.84
RFX4-208ENST00000549040 PPP6R1Q9UPN7 881 aa19.6■□□□□ 0.73
RFX4-208ENST00000549040 ADRA2BP18089 450 aa19.56■□□□□ 0.72
RFX4-208ENST00000549040 PIAS4Q8N2W9 510 aaPredicted RBP19.33■□□□□ 0.68
RFX4-208ENST00000549040 NISCHQ9Y2I1 1504 aa19.11■□□□□ 0.65
RFX4-208ENST00000549040 MSH5O43196 834 aa19.11■□□□□ 0.65
RFX4-208ENST00000549040 POTEDQ86YR6 584 aa18.14■□□□□ 0.49
RFX4-208ENST00000549040 SCAF1Q9H7N4 1312 aaKnown RBP17.94■□□□□ 0.46
RFX4-208ENST00000549040 PPP4R3CPQ6ZMV5 832 aa17.86■□□□□ 0.45
RFX4-208ENST00000549040 MAPK8IP2Q13387 824 aaPredicted RBP17.84■□□□□ 0.45
RFX4-208ENST00000549040 DMRT2Q9Y5R5 561 aa17.64■□□□□ 0.41
RFX4-208ENST00000549040 CNKSR2Q8WXI2 1034 aa17.43■□□□□ 0.38
RFX4-208ENST00000549040 NCBP3Q53F19 620 aaKnown RBP17.33■□□□□ 0.36
RFX4-208ENST00000549040 HOXD11P31277 338 aaPredicted RBP17.17■□□□□ 0.34
RFX4-208ENST00000549040 RNF216Q9NWF9 866 aaPredicted RBP17.16■□□□□ 0.34
RFX4-208ENST00000549040 KCNA4P22459 653 aa17.1■□□□□ 0.33
RFX4-208ENST00000549040 NPM3O75607 178 aaKnown RBP17.04■□□□□ 0.32
RFX4-208ENST00000549040 DCAF8L1A6NGE4 600 aa16.88■□□□□ 0.29
RFX4-208ENST00000549040 CCDC180Q9P1Z9 1646 aa16.72■□□□□ 0.27
RFX4-208ENST00000549040 DNAJC5BQ9UF47 199 aa16.62■□□□□ 0.25
RFX4-208ENST00000549040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.36■□□□□ 0.21
RFX4-208ENST00000549040 RNF39Q9H2S5 420 aa16.34■□□□□ 0.21
RFX4-208ENST00000549040 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
RFX4-208ENST00000549040 ABCC9O60706 1549 aa16.2■□□□□ 0.18
RFX4-208ENST00000549040 SLC4A2P04920 1241 aa16.17■□□□□ 0.18
RFX4-208ENST00000549040 C1QBPQ07021 282 aaKnown RBP16.15■□□□□ 0.18
RFX4-208ENST00000549040 CACNB1Q02641 598 aaPredicted RBP16.13■□□□□ 0.17
RFX4-208ENST00000549040 U3KPZ7 1027 aaPredicted RBP16.04■□□□□ 0.16
RFX4-208ENST00000549040 ZCCHC6Q5VYS8 1495 aaKnown RBP15.96■□□□□ 0.14
RFX4-208ENST00000549040 DCAF8L2P0C7V8 631 aa15.89■□□□□ 0.13
RFX4-208ENST00000549040 FOXD4L1Q9NU39 408 aa15.83■□□□□ 0.12
RFX4-208ENST00000549040 DCAF1Q9Y4B6 1507 aa15.79■□□□□ 0.12
RFX4-208ENST00000549040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.78■□□□□ 0.12
RFX4-208ENST00000549040 HNRNPUL2Q1KMD3 747 aaKnown RBP15.78■□□□□ 0.12
RFX4-208ENST00000549040 MYCNP04198 464 aaPredicted RBP15.75■□□□□ 0.11
RFX4-208ENST00000549040 MYO15BQ96JP2 1530 aa15.74■□□□□ 0.11
RFX4-208ENST00000549040 NACADO15069 1562 aa15.71■□□□□ 0.11
RFX4-208ENST00000549040 ZBTB22O15209 634 aa15.71■□□□□ 0.11
RFX4-208ENST00000549040 SAMD1Q6SPF0 538 aaPredicted RBP15.7■□□□□ 0.1
RFX4-208ENST00000549040 APLP2Q06481 763 aa15.68■□□□□ 0.1
RFX4-208ENST00000549040 SPINK5Q9NQ38 1064 aaPredicted RBP15.68■□□□□ 0.1
RFX4-208ENST00000549040 CAPN15O75808 1086 aa15.65■□□□□ 0.1
RFX4-208ENST00000549040 RB1CC1Q8TDY2 1594 aa15.63■□□□□ 0.09
RFX4-208ENST00000549040 TRHP20396 242 aaPredicted RBP15.5■□□□□ 0.07
RFX4-208ENST00000549040 ZNF219Q9P2Y4 722 aaPredicted RBP15.49■□□□□ 0.07
RFX4-208ENST00000549040 DSG3P32926 999 aa15.46■□□□□ 0.07
RFX4-208ENST00000549040 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
RFX4-208ENST00000549040 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
RFX4-208ENST00000549040 ATF5Q9Y2D1 282 aaPredicted RBP15.34■□□□□ 0.05
RFX4-208ENST00000549040 SCRIBQ14160 1630 aa15.34■□□□□ 0.05
RFX4-208ENST00000549040 ATXN8OSP0DMR3 200 aa15.33■□□□□ 0.04
RFX4-208ENST00000549040 SHROOM4Q9ULL8 1493 aa15.33■□□□□ 0.04
RFX4-208ENST00000549040 ABCB7O75027 752 aa15.3■□□□□ 0.04
RFX4-208ENST00000549040 PABPN1Q86U42 306 aaKnown RBP eCLIP15.27■□□□□ 0.04
RFX4-208ENST00000549040 UNC13AQ9UPW8 1703 aa15.26■□□□□ 0.03
RFX4-208ENST00000549040 BICRAQ9NZM4 1560 aa15.24■□□□□ 0.03
RFX4-208ENST00000549040 POLA2Q14181 598 aa15.2■□□□□ 0.02
RFX4-208ENST00000549040 ZBTB12Q9Y330 459 aaPredicted RBP14.92□□□□□ -0.02
RFX4-208ENST00000549040 CECR2Q9BXF3 1484 aa14.92□□□□□ -0.02
RFX4-208ENST00000549040 EIF4G1Q04637 1599 aaKnown RBP14.76□□□□□ -0.05
RFX4-208ENST00000549040 MROH2BQ7Z745 1585 aa14.76□□□□□ -0.05
RFX4-208ENST00000549040 FBLN2P98095 1184 aa14.75□□□□□ -0.05
RFX4-208ENST00000549040 RBM42Q9BTD8 480 aaKnown RBP14.75□□□□□ -0.05
RFX4-208ENST00000549040 BAZ1AQ9NRL2 1556 aaPredicted RBP14.73□□□□□ -0.05
RFX4-208ENST00000549040 RSF1Q96T23 1441 aaPredicted RBP14.73□□□□□ -0.05
RFX4-208ENST00000549040 SMARCA4P51532 1647 aa14.7□□□□□ -0.06
RFX4-208ENST00000549040 MKRN4PQ13434 485 aaPredicted RBP14.66□□□□□ -0.06
RFX4-208ENST00000549040 OSCARQ8IYS5 282 aa14.65□□□□□ -0.06
RFX4-208ENST00000549040 ATAD2BQ9ULI0 1458 aa14.63□□□□□ -0.07
RFX4-208ENST00000549040 CC2D2AQ9P2K1 1620 aa14.63□□□□□ -0.07
RFX4-208ENST00000549040 SUPT5HO00267 1087 aaKnown RBP14.59□□□□□ -0.07
RFX4-208ENST00000549040 PEG3Q9GZU2 1588 aa14.58□□□□□ -0.08
RFX4-208ENST00000549040 NCAPD3P42695 1498 aa14.57□□□□□ -0.08
RFX4-208ENST00000549040 WIZO95785 1651 aa14.56□□□□□ -0.08
RFX4-208ENST00000549040 SMARCA2P51531 1590 aa14.53□□□□□ -0.08
RFX4-208ENST00000549040 AKT1S1Q96B36 256 aa14.51□□□□□ -0.09
RFX4-208ENST00000549040 SPDYE2BA6NHP3 402 aa14.5□□□□□ -0.09
RFX4-208ENST00000549040 SPDYE6P0CI01 402 aa14.5□□□□□ -0.09
RFX4-208ENST00000549040 SPDYE2Q495Y8 402 aa14.5□□□□□ -0.09
RFX4-208ENST00000549040 BAZ1BQ9UIG0 1483 aaKnown RBP14.45□□□□□ -0.1
RFX4-208ENST00000549040 HMGXB3Q12766 1538 aa14.45□□□□□ -0.1
RFX4-208ENST00000549040 ZNF692Q9BU19 519 aaPredicted RBP14.41□□□□□ -0.1
RFX4-208ENST00000549040 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
RFX4-208ENST00000549040 REM2Q8IYK8 340 aaPredicted RBP14.36□□□□□ -0.11
RFX4-208ENST00000549040 SSUH2Q9Y2M2 353 aa14.34□□□□□ -0.11
RFX4-208ENST00000549040 CCDC88BA6NC98 1476 aa14.32□□□□□ -0.12
RFX4-208ENST00000549040 POTEHQ6S545 545 aa14.27□□□□□ -0.13
RFX4-208ENST00000549040 CHRDL2Q6WN34 429 aa14.24□□□□□ -0.13
RFX4-208ENST00000549040 SPDYE4A6NLX3 237 aa14.21□□□□□ -0.13
RFX4-208ENST00000549040 PITPNM1O00562 1244 aa14.17□□□□□ -0.14
RFX4-208ENST00000549040 CADPSQ9ULU8 1353 aa14.17□□□□□ -0.14
RFX4-208ENST00000549040 SPDYE1Q8NFV5 336 aaPredicted RBP14.15□□□□□ -0.14
RFX4-208ENST00000549040 NESP48681 1621 aa14.14□□□□□ -0.15
RFX4-208ENST00000549040 CFTRP13569 1480 aa14.13□□□□□ -0.15
RFX4-208ENST00000549040 CLEC11AQ9Y240 323 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms