RNA–Protein interactions for RNA: ENST00000546433.5

SSH1-203, Transcript of slingshot protein phosphatase 1, humanhuman

TSL 5

Gene SSH1, Length 5,621 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-203ENST00000546433 NISCHQ9Y2I1 1504 aa18.81■□□□□ 0.6
SSH1-203ENST00000546433 DCAF8L2P0C7V8 631 aa18.63■□□□□ 0.57
SSH1-203ENST00000546433 ABCC9O60706 1549 aa16.92■□□□□ 0.3
SSH1-203ENST00000546433 SUPT5HO00267 1087 aaKnown RBP16.89■□□□□ 0.29
SSH1-203ENST00000546433 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
SSH1-203ENST00000546433 SHROOM4Q9ULL8 1493 aa16.7■□□□□ 0.26
SSH1-203ENST00000546433 PELP1Q8IZL8 1130 aaKnown RBP16.36■□□□□ 0.21
SSH1-203ENST00000546433 PABPN1Q86U42 306 aaKnown RBP eCLIP16.33■□□□□ 0.2
SSH1-203ENST00000546433 CCDC180Q9P1Z9 1646 aa16.27■□□□□ 0.2
SSH1-203ENST00000546433 APLP2Q06481 763 aa16.26■□□□□ 0.19
SSH1-203ENST00000546433 EHMT2Q96KQ7 1210 aa16.17■□□□□ 0.18
SSH1-203ENST00000546433 RB1CC1Q8TDY2 1594 aa16.12■□□□□ 0.17
SSH1-203ENST00000546433 ZEB1P37275 1124 aaPredicted RBP15.87■□□□□ 0.13
SSH1-203ENST00000546433 NACADO15069 1562 aa15.84■□□□□ 0.13
SSH1-203ENST00000546433 PCGF6Q9BYE7 350 aa15.8■□□□□ 0.12
SSH1-203ENST00000546433 TRIM41Q8WV44 630 aa15.77■□□□□ 0.12
SSH1-203ENST00000546433 SCRIBQ14160 1630 aa15.74■□□□□ 0.11
SSH1-203ENST00000546433 CENPBP07199 599 aaPredicted RBP15.74■□□□□ 0.11
SSH1-203ENST00000546433 ATP1B4Q9UN42 357 aaPredicted RBP15.71■□□□□ 0.11
SSH1-203ENST00000546433 TTBK1Q5TCY1 1321 aaPredicted RBP15.68■□□□□ 0.1
SSH1-203ENST00000546433 MYT1LQ9UL68 1186 aa15.65■□□□□ 0.1
SSH1-203ENST00000546433 CCER1Q8TC90 406 aaPredicted RBP15.63■□□□□ 0.09
SSH1-203ENST00000546433 FBLN2P98095 1184 aa15.6■□□□□ 0.09
SSH1-203ENST00000546433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.58■□□□□ 0.08
SSH1-203ENST00000546433 HNRNPUL2Q1KMD3 747 aaKnown RBP15.58■□□□□ 0.08
SSH1-203ENST00000546433 UBTFP17480 764 aaKnown RBP15.56■□□□□ 0.08
SSH1-203ENST00000546433 RANGAP1P46060 587 aaPredicted RBP15.54■□□□□ 0.08
SSH1-203ENST00000546433 ERICH6Q7L0X2 663 aa15.54■□□□□ 0.08
SSH1-203ENST00000546433 ERCC6Q03468 1493 aa15.53■□□□□ 0.08
SSH1-203ENST00000546433 ZCCHC6Q5VYS8 1495 aaKnown RBP15.49■□□□□ 0.07
SSH1-203ENST00000546433 NPM1P06748 294 aaKnown RBP eCLIP15.42■□□□□ 0.06
SSH1-203ENST00000546433 NEFLP07196 543 aa15.39■□□□□ 0.05
SSH1-203ENST00000546433 TRIM26Q12899 539 aaPredicted RBP15.32■□□□□ 0.04
SSH1-203ENST00000546433 MYT1Q01538 1121 aa15.26■□□□□ 0.03
SSH1-203ENST00000546433 BAZ1BQ9UIG0 1483 aaKnown RBP15.21■□□□□ 0.03
SSH1-203ENST00000546433 DCAF1Q9Y4B6 1507 aa15.17■□□□□ 0.02
SSH1-203ENST00000546433 CECR2Q9BXF3 1484 aa15.16■□□□□ 0.02
SSH1-203ENST00000546433 CHMP7Q8WUX9 453 aaPredicted RBP15.16■□□□□ 0.02
SSH1-203ENST00000546433 YTHDC1Q96MU7 727 aaKnown RBP15.16■□□□□ 0.02
SSH1-203ENST00000546433 ESF1Q9H501 851 aaKnown RBP15.12■□□□□ 0.01
SSH1-203ENST00000546433 MYO15BQ96JP2 1530 aa15.09■□□□□ 0.01
SSH1-203ENST00000546433 HRCP23327 699 aa15.08■□□□□ 0.01
SSH1-203ENST00000546433 PPARGC1BQ86YN6 1023 aaKnown RBP15.08■□□□□ 0
SSH1-203ENST00000546433 PDS5BQ9NTI5 1447 aa15.06■□□□□ 0
SSH1-203ENST00000546433 CHIC1Q5VXU3 224 aa15.06■□□□□ 0
SSH1-203ENST00000546433 SMARCA2P51531 1590 aa15.02□□□□□ -0.01
SSH1-203ENST00000546433 TRHP20396 242 aaPredicted RBP15.01□□□□□ -0.01
SSH1-203ENST00000546433 CDK11AQ9UQ88 783 aaPredicted RBP14.99□□□□□ -0.01
SSH1-203ENST00000546433 BAZ1AQ9NRL2 1556 aaPredicted RBP14.97□□□□□ -0.01
SSH1-203ENST00000546433 ITGAEP38570 1179 aa14.96□□□□□ -0.01
SSH1-203ENST00000546433 LOC105371045A0A1W2PR82 267 aa14.93□□□□□ -0.02
SSH1-203ENST00000546433 DAXXQ9UER7 740 aaPredicted RBP14.93□□□□□ -0.02
SSH1-203ENST00000546433 POLR3GLQ9BT43 218 aa14.86□□□□□ -0.03
SSH1-203ENST00000546433 AEBP2Q6ZN18 517 aaPredicted RBP14.79□□□□□ -0.04
SSH1-203ENST00000546433 BCANQ96GW7 911 aa14.79□□□□□ -0.04
SSH1-203ENST00000546433 DIEXFQ68CQ4 756 aaKnown RBP14.72□□□□□ -0.05
SSH1-203ENST00000546433 PLPPR3Q6T4P5 718 aa14.7□□□□□ -0.06
SSH1-203ENST00000546433 FAM50AQ14320 339 aaKnown RBP14.69□□□□□ -0.06
SSH1-203ENST00000546433 OSCARQ8IYS5 282 aa14.68□□□□□ -0.06
SSH1-203ENST00000546433 CEP164Q9UPV0 1460 aa14.68□□□□□ -0.06
SSH1-203ENST00000546433 ARID4BQ4LE39 1312 aaPredicted RBP14.67□□□□□ -0.06
SSH1-203ENST00000546433 STAG3Q9UJ98 1225 aa14.67□□□□□ -0.06
SSH1-203ENST00000546433 ARID3CA6NKF2 412 aa14.65□□□□□ -0.06
SSH1-203ENST00000546433 P3H3Q8IVL6 736 aa14.64□□□□□ -0.07
SSH1-203ENST00000546433 CADPSQ9ULU8 1353 aa14.63□□□□□ -0.07
SSH1-203ENST00000546433 TRIM52Q96A61 297 aa14.62□□□□□ -0.07
SSH1-203ENST00000546433 ZNF777Q9ULD5 760 aaPredicted RBP14.62□□□□□ -0.07
SSH1-203ENST00000546433 SLC4A1APQ9BWU0 796 aaKnown RBP14.61□□□□□ -0.07
SSH1-203ENST00000546433 EIF4G1Q04637 1599 aaKnown RBP14.6□□□□□ -0.07
SSH1-203ENST00000546433 ABCC8Q09428 1581 aa14.6□□□□□ -0.07
SSH1-203ENST00000546433 CSRNP3Q8WYN3 585 aa14.59□□□□□ -0.07
SSH1-203ENST00000546433 CNGB1Q14028 1251 aaPredicted RBP14.58□□□□□ -0.07
SSH1-203ENST00000546433 WRNQ14191 1432 aaPredicted RBP eCLIP14.58□□□□□ -0.08
SSH1-203ENST00000546433 ZNF316A6NFI3 1004 aaPredicted RBP14.57□□□□□ -0.08
SSH1-203ENST00000546433 RTL5Q5HYW3 569 aaPredicted RBP14.57□□□□□ -0.08
SSH1-203ENST00000546433 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
SSH1-203ENST00000546433 CLSPNQ9HAW4 1339 aa14.55□□□□□ -0.08
SSH1-203ENST00000546433 ATAD2BQ9ULI0 1458 aa14.55□□□□□ -0.08
SSH1-203ENST00000546433 KIF27Q86VH2 1401 aa14.55□□□□□ -0.08
SSH1-203ENST00000546433 CC2D2AQ9P2K1 1620 aa14.54□□□□□ -0.08
SSH1-203ENST00000546433 PLEKHD1A6NEE1 506 aa14.54□□□□□ -0.08
SSH1-203ENST00000546433 CARMIL2Q6F5E8 1435 aa14.52□□□□□ -0.08
SSH1-203ENST00000546433 KCNH8Q96L42 1107 aa14.52□□□□□ -0.08
SSH1-203ENST00000546433 ANP32CO43423 234 aa14.52□□□□□ -0.08
SSH1-203ENST00000546433 NEUROD1Q13562 356 aa14.51□□□□□ -0.09
SSH1-203ENST00000546433 SOGA1O94964 1423 aa14.48□□□□□ -0.09
SSH1-203ENST00000546433 SMARCA4P51532 1647 aa14.46□□□□□ -0.09
SSH1-203ENST00000546433 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
SSH1-203ENST00000546433 NCAPD3P42695 1498 aa14.44□□□□□ -0.1
SSH1-203ENST00000546433 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
SSH1-203ENST00000546433 TSPY4P0CV99 314 aa14.4□□□□□ -0.1
SSH1-203ENST00000546433 TSPY10P0CW01 314 aa14.4□□□□□ -0.1
SSH1-203ENST00000546433 MRC2Q9UBG0 1479 aa14.39□□□□□ -0.11
SSH1-203ENST00000546433 CYB5RLQ6IPT4 315 aa14.38□□□□□ -0.11
SSH1-203ENST00000546433 CUX2O14529 1486 aa14.37□□□□□ -0.11
SSH1-203ENST00000546433 ZNF326Q5BKZ1 582 aaKnown RBP14.37□□□□□ -0.11
SSH1-203ENST00000546433 ZBTB47Q9UFB7 747 aaPredicted RBP14.37□□□□□ -0.11
SSH1-203ENST00000546433 MROH2BQ7Z745 1585 aa14.36□□□□□ -0.11
SSH1-203ENST00000546433 EEA1Q15075 1411 aa14.35□□□□□ -0.11
SSH1-203ENST00000546433 CHGAP10645 457 aaKnown RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms