RNA–Protein interactions for RNA: ENST00000545848.5

LDHC-209, Transcript of lactate dehydrogenase C, humanhuman

TSL 1 (best)

Gene LDHC, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHC-209ENST00000545848 AEBP2Q6ZN18 517 aaPredicted RBP24.31■■□□□ 1.48
LDHC-209ENST00000545848 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
LDHC-209ENST00000545848 SENP3Q9H4L4 574 aaPredicted RBP20.71■□□□□ 0.91
LDHC-209ENST00000545848 PHF23Q9BUL5 403 aaPredicted RBP20.47■□□□□ 0.87
LDHC-209ENST00000545848 FOXD1Q16676 465 aa19.28■□□□□ 0.68
LDHC-209ENST00000545848 PLPPR3Q6T4P5 718 aa18.74■□□□□ 0.59
LDHC-209ENST00000545848 PPP6R1Q9UPN7 881 aa18.19■□□□□ 0.5
LDHC-209ENST00000545848 ADRA2BP18089 450 aa18.15■□□□□ 0.5
LDHC-209ENST00000545848 PIAS4Q8N2W9 510 aaPredicted RBP18.08■□□□□ 0.48
LDHC-209ENST00000545848 MSH5O43196 834 aa17.96■□□□□ 0.47
LDHC-209ENST00000545848 POTEDQ86YR6 584 aa17.96■□□□□ 0.47
LDHC-209ENST00000545848 SCAF1Q9H7N4 1312 aaKnown RBP16.62■□□□□ 0.25
LDHC-209ENST00000545848 MAPK8IP2Q13387 824 aaPredicted RBP16.6■□□□□ 0.25
LDHC-209ENST00000545848 DMRT2Q9Y5R5 561 aa16.46■□□□□ 0.23
LDHC-209ENST00000545848 PPP4R3CPQ6ZMV5 832 aa16.44■□□□□ 0.22
LDHC-209ENST00000545848 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
LDHC-209ENST00000545848 HOXD11P31277 338 aaPredicted RBP15.94■□□□□ 0.14
LDHC-209ENST00000545848 NCBP3Q53F19 620 aaKnown RBP15.88■□□□□ 0.13
LDHC-209ENST00000545848 RNF216Q9NWF9 866 aaPredicted RBP15.88■□□□□ 0.13
LDHC-209ENST00000545848 NISCHQ9Y2I1 1504 aa15.84■□□□□ 0.13
LDHC-209ENST00000545848 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
LDHC-209ENST00000545848 NPM3O75607 178 aaKnown RBP15.66■□□□□ 0.1
LDHC-209ENST00000545848 KCNA4P22459 653 aa15.55■□□□□ 0.08
LDHC-209ENST00000545848 RNF39Q9H2S5 420 aa15.34■□□□□ 0.05
LDHC-209ENST00000545848 DNAJC5BQ9UF47 199 aa15.33■□□□□ 0.04
LDHC-209ENST00000545848 CACNB1Q02641 598 aaPredicted RBP15.27■□□□□ 0.04
LDHC-209ENST00000545848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.19■□□□□ 0.02
LDHC-209ENST00000545848 C1QBPQ07021 282 aaKnown RBP15.13■□□□□ 0.01
LDHC-209ENST00000545848 U3KPZ7 1027 aaPredicted RBP14.91□□□□□ -0.02
LDHC-209ENST00000545848 SLC4A2P04920 1241 aa14.89□□□□□ -0.03
LDHC-209ENST00000545848 SLC4A1APQ9BWU0 796 aaKnown RBP14.72□□□□□ -0.05
LDHC-209ENST00000545848 SPINK5Q9NQ38 1064 aaPredicted RBP14.62□□□□□ -0.07
LDHC-209ENST00000545848 CAPN15O75808 1086 aa14.59□□□□□ -0.07
LDHC-209ENST00000545848 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.56□□□□□ -0.08
LDHC-209ENST00000545848 HNRNPUL2Q1KMD3 747 aaKnown RBP14.56□□□□□ -0.08
LDHC-209ENST00000545848 APLP2Q06481 763 aa14.51□□□□□ -0.09
LDHC-209ENST00000545848 MYCNP04198 464 aaPredicted RBP14.48□□□□□ -0.09
LDHC-209ENST00000545848 SAMD1Q6SPF0 538 aaPredicted RBP14.48□□□□□ -0.09
LDHC-209ENST00000545848 DSG3P32926 999 aa14.45□□□□□ -0.1
LDHC-209ENST00000545848 FOXD4L1Q9NU39 408 aa14.45□□□□□ -0.1
LDHC-209ENST00000545848 TRHP20396 242 aaPredicted RBP14.41□□□□□ -0.1
LDHC-209ENST00000545848 ZNF219Q9P2Y4 722 aaPredicted RBP14.39□□□□□ -0.11
LDHC-209ENST00000545848 ZBTB22O15209 634 aa14.3□□□□□ -0.12
LDHC-209ENST00000545848 ABCB7O75027 752 aa14.27□□□□□ -0.13
LDHC-209ENST00000545848 CCDC180Q9P1Z9 1646 aa14.16□□□□□ -0.14
LDHC-209ENST00000545848 ATF5Q9Y2D1 282 aaPredicted RBP14.12□□□□□ -0.15
LDHC-209ENST00000545848 POLA2Q14181 598 aa14.08□□□□□ -0.16
LDHC-209ENST00000545848 ATXN8OSP0DMR3 200 aa13.97□□□□□ -0.17
LDHC-209ENST00000545848 POTEHQ6S545 545 aa13.95□□□□□ -0.18
LDHC-209ENST00000545848 ABCC9O60706 1549 aa13.93□□□□□ -0.18
LDHC-209ENST00000545848 CSRNP3Q8WYN3 585 aa13.84□□□□□ -0.19
LDHC-209ENST00000545848 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
LDHC-209ENST00000545848 ZBTB12Q9Y330 459 aaPredicted RBP13.8□□□□□ -0.2
LDHC-209ENST00000545848 RBM42Q9BTD8 480 aaKnown RBP13.78□□□□□ -0.2
LDHC-209ENST00000545848 OSCARQ8IYS5 282 aa13.62□□□□□ -0.23
LDHC-209ENST00000545848 FBLN2P98095 1184 aa13.56□□□□□ -0.24
LDHC-209ENST00000545848 AKT1S1Q96B36 256 aa13.5□□□□□ -0.25
LDHC-209ENST00000545848 MKRN4PQ13434 485 aaPredicted RBP13.48□□□□□ -0.25
LDHC-209ENST00000545848 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
LDHC-209ENST00000545848 SPDYE2BA6NHP3 402 aa13.38□□□□□ -0.27
LDHC-209ENST00000545848 SPDYE6P0CI01 402 aa13.38□□□□□ -0.27
LDHC-209ENST00000545848 SPDYE2Q495Y8 402 aa13.38□□□□□ -0.27
LDHC-209ENST00000545848 REM2Q8IYK8 340 aaPredicted RBP13.38□□□□□ -0.27
LDHC-209ENST00000545848 UNC13AQ9UPW8 1703 aa13.33□□□□□ -0.28
LDHC-209ENST00000545848 ZNF692Q9BU19 519 aaPredicted RBP13.27□□□□□ -0.29
LDHC-209ENST00000545848 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
LDHC-209ENST00000545848 PITPNM1O00562 1244 aa13.24□□□□□ -0.29
LDHC-209ENST00000545848 SSUH2Q9Y2M2 353 aa13.23□□□□□ -0.29
LDHC-209ENST00000545848 ZCCHC6Q5VYS8 1495 aaKnown RBP13.23□□□□□ -0.29
LDHC-209ENST00000545848 NACADO15069 1562 aa13.21□□□□□ -0.29
LDHC-209ENST00000545848 PIP4P2Q8N4L2 257 aa13.11□□□□□ -0.31
LDHC-209ENST00000545848 SPDYE1Q8NFV5 336 aaPredicted RBP13.1□□□□□ -0.31
LDHC-209ENST00000545848 BICRAQ9NZM4 1560 aa13.1□□□□□ -0.31
LDHC-209ENST00000545848 CLEC11AQ9Y240 323 aa13.09□□□□□ -0.31
LDHC-209ENST00000545848 PABPN1Q86U42 306 aaKnown RBP eCLIP13.08□□□□□ -0.32
LDHC-209ENST00000545848 FXR2P51116 673 aaKnown RBP eCLIP13.07□□□□□ -0.32
LDHC-209ENST00000545848 MYO15BQ96JP2 1530 aa13.07□□□□□ -0.32
LDHC-209ENST00000545848 DCAF8L2P0C7V8 631 aa13.06□□□□□ -0.32
LDHC-209ENST00000545848 DCAF1Q9Y4B6 1507 aa13.03□□□□□ -0.32
LDHC-209ENST00000545848 SCRIBQ14160 1630 aa12.99□□□□□ -0.33
LDHC-209ENST00000545848 SPDYE4A6NLX3 237 aa12.97□□□□□ -0.33
LDHC-209ENST00000545848 PRKAR2AP13861 404 aaKnown RBP12.91□□□□□ -0.34
LDHC-209ENST00000545848 PRR29P0C7W0 189 aa12.89□□□□□ -0.35
LDHC-209ENST00000545848 HAX1O00165 279 aa12.83□□□□□ -0.36
LDHC-209ENST00000545848 CHADLQ6NUI6 762 aa12.81□□□□□ -0.36
LDHC-209ENST00000545848 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
LDHC-209ENST00000545848 SP7Q8TDD2 431 aaPredicted RBP12.75□□□□□ -0.37
LDHC-209ENST00000545848 EVX2Q03828 476 aa12.68□□□□□ -0.38
LDHC-209ENST00000545848 PROM2Q8N271 834 aa12.67□□□□□ -0.38
LDHC-209ENST00000545848 CC2D2AQ9P2K1 1620 aa12.64□□□□□ -0.39
LDHC-209ENST00000545848 C19orf67A6NJJ6 358 aa12.64□□□□□ -0.39
LDHC-209ENST00000545848 EIF4G1Q04637 1599 aaKnown RBP12.64□□□□□ -0.39
LDHC-209ENST00000545848 FARP1Q9Y4F1 1045 aaPredicted RBP12.63□□□□□ -0.39
LDHC-209ENST00000545848 SHROOM4Q9ULL8 1493 aa12.62□□□□□ -0.39
LDHC-209ENST00000545848 CREBZFQ9NS37 354 aa12.61□□□□□ -0.39
LDHC-209ENST00000545848 FKBP8Q14318 412 aa12.55□□□□□ -0.4
LDHC-209ENST00000545848 CD44P16070 742 aaKnown RBP12.52□□□□□ -0.41
LDHC-209ENST00000545848 CECR2Q9BXF3 1484 aa12.46□□□□□ -0.41
LDHC-209ENST00000545848 MNX1P50219 401 aaPredicted RBP12.43□□□□□ -0.42
LDHC-209ENST00000545848 GABBR2O75899 941 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms