RNA–Protein interactions for RNA: ENST00000543153.1

RFC5-209, Transcript of replication factor C subunit 5, humanhuman

TSL 5

Gene RFC5, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC5-209ENST00000543153 AEBP2Q6ZN18 517 aaPredicted RBP35.19■■■■□ 3.22
RFC5-209ENST00000543153 CHIC1Q5VXU3 224 aa34.87■■■■□ 3.17
RFC5-209ENST00000543153 PHF23Q9BUL5 403 aaPredicted RBP30.64■■■□□ 2.5
RFC5-209ENST00000543153 SENP3Q9H4L4 574 aaPredicted RBP29.95■■■□□ 2.39
RFC5-209ENST00000543153 PLPPR3Q6T4P5 718 aa28.58■■■□□ 2.17
RFC5-209ENST00000543153 FOXD1Q16676 465 aa27.65■■■□□ 2.02
RFC5-209ENST00000543153 ADRA2BP18089 450 aa26.94■■□□□ 1.9
RFC5-209ENST00000543153 PPP6R1Q9UPN7 881 aa26.9■■□□□ 1.9
RFC5-209ENST00000543153 PIAS4Q8N2W9 510 aaPredicted RBP26.24■■□□□ 1.79
RFC5-209ENST00000543153 MSH5O43196 834 aa25.44■■□□□ 1.66
RFC5-209ENST00000543153 PPP4R3CPQ6ZMV5 832 aa25.2■■□□□ 1.62
RFC5-209ENST00000543153 KCNA4P22459 653 aa25.05■■□□□ 1.6
RFC5-209ENST00000543153 NISCHQ9Y2I1 1504 aa24.99■■□□□ 1.59
RFC5-209ENST00000543153 SCAF1Q9H7N4 1312 aaKnown RBP24.83■■□□□ 1.56
RFC5-209ENST00000543153 NCBP3Q53F19 620 aaKnown RBP24.78■■□□□ 1.56
RFC5-209ENST00000543153 CNKSR2Q8WXI2 1034 aa24.43■■□□□ 1.5
RFC5-209ENST00000543153 MAPK8IP2Q13387 824 aaPredicted RBP24.3■■□□□ 1.48
RFC5-209ENST00000543153 NPM3O75607 178 aaKnown RBP24.27■■□□□ 1.48
RFC5-209ENST00000543153 SLC4A1APQ9BWU0 796 aaKnown RBP24.01■■□□□ 1.43
RFC5-209ENST00000543153 DMRT2Q9Y5R5 561 aa23.93■■□□□ 1.42
RFC5-209ENST00000543153 RNF216Q9NWF9 866 aaPredicted RBP23.84■■□□□ 1.41
RFC5-209ENST00000543153 EHMT2Q96KQ7 1210 aa23.79■■□□□ 1.4
RFC5-209ENST00000543153 HOXD11P31277 338 aaPredicted RBP23.59■■□□□ 1.37
RFC5-209ENST00000543153 DNAJC5BQ9UF47 199 aa23.52■■□□□ 1.36
RFC5-209ENST00000543153 CSRNP3Q8WYN3 585 aa23.27■■□□□ 1.32
RFC5-209ENST00000543153 ZBTB22O15209 634 aa22.99■■□□□ 1.27
RFC5-209ENST00000543153 FOXD4L1Q9NU39 408 aa22.99■■□□□ 1.27
RFC5-209ENST00000543153 DCAF8L1A6NGE4 600 aa22.95■■□□□ 1.26
RFC5-209ENST00000543153 SLC4A2P04920 1241 aa22.77■■□□□ 1.24
RFC5-209ENST00000543153 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.58■■□□□ 1.21
RFC5-209ENST00000543153 ABCC9O60706 1549 aa22.57■■□□□ 1.2
RFC5-209ENST00000543153 MYCNP04198 464 aaPredicted RBP22.49■■□□□ 1.19
RFC5-209ENST00000543153 CCDC180Q9P1Z9 1646 aa22.43■■□□□ 1.18
RFC5-209ENST00000543153 POTEDQ86YR6 584 aa22.32■■□□□ 1.16
RFC5-209ENST00000543153 ATXN8OSP0DMR3 200 aa22.2■■□□□ 1.14
RFC5-209ENST00000543153 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.18■■□□□ 1.14
RFC5-209ENST00000543153 HNRNPUL2Q1KMD3 747 aaKnown RBP22.18■■□□□ 1.14
RFC5-209ENST00000543153 U3KPZ7 1027 aaPredicted RBP22.14■■□□□ 1.13
RFC5-209ENST00000543153 SAMD1Q6SPF0 538 aaPredicted RBP22.08■■□□□ 1.13
RFC5-209ENST00000543153 APLP2Q06481 763 aa21.88■■□□□ 1.09
RFC5-209ENST00000543153 RNF39Q9H2S5 420 aa21.77■■□□□ 1.08
RFC5-209ENST00000543153 ATF5Q9Y2D1 282 aaPredicted RBP21.72■■□□□ 1.07
RFC5-209ENST00000543153 C1QBPQ07021 282 aaKnown RBP21.6■■□□□ 1.05
RFC5-209ENST00000543153 ZNF219Q9P2Y4 722 aaPredicted RBP21.46■■□□□ 1.03
RFC5-209ENST00000543153 RB1CC1Q8TDY2 1594 aa21.43■■□□□ 1.02
RFC5-209ENST00000543153 CAPN15O75808 1086 aa21.39■■□□□ 1.01
RFC5-209ENST00000543153 SPINK5Q9NQ38 1064 aaPredicted RBP21.39■■□□□ 1.01
RFC5-209ENST00000543153 TRHP20396 242 aaPredicted RBP21.38■■□□□ 1.01
RFC5-209ENST00000543153 DCAF8L2P0C7V8 631 aa21.27■■□□□ 1
RFC5-209ENST00000543153 NACADO15069 1562 aa21.23■□□□□ 0.99
RFC5-209ENST00000543153 POLA2Q14181 598 aa21.11■□□□□ 0.97
RFC5-209ENST00000543153 FKBP8Q14318 412 aa21.07■□□□□ 0.96
RFC5-209ENST00000543153 PABPN1Q86U42 306 aaKnown RBP eCLIP20.99■□□□□ 0.95
RFC5-209ENST00000543153 FBLN2P98095 1184 aa20.97■□□□□ 0.95
RFC5-209ENST00000543153 CACNB1Q02641 598 aaPredicted RBP20.96■□□□□ 0.95
RFC5-209ENST00000543153 ABCB7O75027 752 aa20.95■□□□□ 0.94
RFC5-209ENST00000543153 ZBTB12Q9Y330 459 aaPredicted RBP20.89■□□□□ 0.93
RFC5-209ENST00000543153 MYO15BQ96JP2 1530 aa20.88■□□□□ 0.93
RFC5-209ENST00000543153 DSG3P32926 999 aa20.86■□□□□ 0.93
RFC5-209ENST00000543153 UNC13AQ9UPW8 1703 aa20.82■□□□□ 0.92
RFC5-209ENST00000543153 MKRN4PQ13434 485 aaPredicted RBP20.81■□□□□ 0.92
RFC5-209ENST00000543153 BICRAQ9NZM4 1560 aa20.72■□□□□ 0.91
RFC5-209ENST00000543153 ZCCHC6Q5VYS8 1495 aaKnown RBP20.71■□□□□ 0.91
RFC5-209ENST00000543153 SPDYE4A6NLX3 237 aa20.66■□□□□ 0.9
RFC5-209ENST00000543153 DCAF1Q9Y4B6 1507 aa20.6■□□□□ 0.89
RFC5-209ENST00000543153 SCRIBQ14160 1630 aa20.52■□□□□ 0.88
RFC5-209ENST00000543153 SHROOM4Q9ULL8 1493 aa20.49■□□□□ 0.87
RFC5-209ENST00000543153 OSCARQ8IYS5 282 aa20.34■□□□□ 0.85
RFC5-209ENST00000543153 CC2D2AQ9P2K1 1620 aa20.32■□□□□ 0.84
RFC5-209ENST00000543153 CECR2Q9BXF3 1484 aa20.31■□□□□ 0.84
RFC5-209ENST00000543153 SPDYE2BA6NHP3 402 aa20.31■□□□□ 0.84
RFC5-209ENST00000543153 SPDYE6P0CI01 402 aa20.31■□□□□ 0.84
RFC5-209ENST00000543153 SPDYE2Q495Y8 402 aa20.31■□□□□ 0.84
RFC5-209ENST00000543153 FBXO3Q9UK99 471 aa20.31■□□□□ 0.84
RFC5-209ENST00000543153 PROM2Q8N271 834 aa20.3■□□□□ 0.84
RFC5-209ENST00000543153 ZNF692Q9BU19 519 aaPredicted RBP20.3■□□□□ 0.84
RFC5-209ENST00000543153 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
RFC5-209ENST00000543153 SSUH2Q9Y2M2 353 aa20.12■□□□□ 0.81
RFC5-209ENST00000543153 AMER1Q5JTC6 1135 aaPredicted RBP20.01■□□□□ 0.79
RFC5-209ENST00000543153 RBM42Q9BTD8 480 aaKnown RBP19.98■□□□□ 0.79
RFC5-209ENST00000543153 VASPP50552 380 aaPredicted RBP19.93■□□□□ 0.78
RFC5-209ENST00000543153 STAG3Q9UJ98 1225 aa19.86■□□□□ 0.77
RFC5-209ENST00000543153 RTN4Q9NQC3 1192 aaKnown RBP19.85■□□□□ 0.77
RFC5-209ENST00000543153 AKT1S1Q96B36 256 aa19.78■□□□□ 0.76
RFC5-209ENST00000543153 IFNLR1Q8IU57 520 aaPredicted RBP19.64■□□□□ 0.73
RFC5-209ENST00000543153 PLCD3Q8N3E9 789 aa19.63■□□□□ 0.73
RFC5-209ENST00000543153 SPDYE1Q8NFV5 336 aaPredicted RBP19.62■□□□□ 0.73
RFC5-209ENST00000543153 MIER1Q8N108 512 aa19.6■□□□□ 0.73
RFC5-209ENST00000543153 KLHL34Q8N239 644 aa19.58■□□□□ 0.72
RFC5-209ENST00000543153 NCAPD3P42695 1498 aa19.58■□□□□ 0.72
RFC5-209ENST00000543153 PLEKHG5O94827 1062 aa19.57■□□□□ 0.72
RFC5-209ENST00000543153 REM2Q8IYK8 340 aaPredicted RBP19.56■□□□□ 0.72
RFC5-209ENST00000543153 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
RFC5-209ENST00000543153 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
RFC5-209ENST00000543153 SMARCA2P51531 1590 aa19.52■□□□□ 0.71
RFC5-209ENST00000543153 SMARCA4P51532 1647 aa19.51■□□□□ 0.71
RFC5-209ENST00000543153 CLEC11AQ9Y240 323 aa19.5■□□□□ 0.71
RFC5-209ENST00000543153 HMGXB3Q12766 1538 aa19.46■□□□□ 0.71
RFC5-209ENST00000543153 BAZ1AQ9NRL2 1556 aaPredicted RBP19.44■□□□□ 0.7
RFC5-209ENST00000543153 CUX2O14529 1486 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms