RNA–Protein interactions for RNA: ENST00000537568.1

LMO3-216, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 594 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-216ENST00000537568 AEBP2Q6ZN18 517 aaPredicted RBP32.77■■■□□ 2.84
LMO3-216ENST00000537568 CHIC1Q5VXU3 224 aa31.44■■■□□ 2.62
LMO3-216ENST00000537568 SENP3Q9H4L4 574 aaPredicted RBP27.85■■■□□ 2.05
LMO3-216ENST00000537568 PHF23Q9BUL5 403 aaPredicted RBP27.62■■■□□ 2.01
LMO3-216ENST00000537568 FOXD1Q16676 465 aa25.94■■□□□ 1.74
LMO3-216ENST00000537568 PLPPR3Q6T4P5 718 aa25.27■■□□□ 1.64
LMO3-216ENST00000537568 PPP6R1Q9UPN7 881 aa24.56■■□□□ 1.52
LMO3-216ENST00000537568 ADRA2BP18089 450 aa24.49■■□□□ 1.51
LMO3-216ENST00000537568 PIAS4Q8N2W9 510 aaPredicted RBP24.34■■□□□ 1.49
LMO3-216ENST00000537568 MSH5O43196 834 aa24.1■■□□□ 1.45
LMO3-216ENST00000537568 POTEDQ86YR6 584 aa22.94■■□□□ 1.26
LMO3-216ENST00000537568 MAPK8IP2Q13387 824 aaPredicted RBP22.39■■□□□ 1.17
LMO3-216ENST00000537568 SCAF1Q9H7N4 1312 aaKnown RBP22.34■■□□□ 1.17
LMO3-216ENST00000537568 PPP4R3CPQ6ZMV5 832 aa22.22■■□□□ 1.15
LMO3-216ENST00000537568 DMRT2Q9Y5R5 561 aa22.15■■□□□ 1.14
LMO3-216ENST00000537568 CNKSR2Q8WXI2 1034 aa21.7■■□□□ 1.06
LMO3-216ENST00000537568 HOXD11P31277 338 aaPredicted RBP21.48■■□□□ 1.03
LMO3-216ENST00000537568 NCBP3Q53F19 620 aaKnown RBP21.43■■□□□ 1.02
LMO3-216ENST00000537568 RNF216Q9NWF9 866 aaPredicted RBP21.41■■□□□ 1.02
LMO3-216ENST00000537568 DCAF8L1A6NGE4 600 aa21.24■□□□□ 0.99
LMO3-216ENST00000537568 NPM3O75607 178 aaKnown RBP21.17■□□□□ 0.98
LMO3-216ENST00000537568 KCNA4P22459 653 aa21.11■□□□□ 0.97
LMO3-216ENST00000537568 RNF39Q9H2S5 420 aa20.63■□□□□ 0.89
LMO3-216ENST00000537568 DNAJC5BQ9UF47 199 aa20.63■□□□□ 0.89
LMO3-216ENST00000537568 CACNB1Q02641 598 aaPredicted RBP20.48■□□□□ 0.87
LMO3-216ENST00000537568 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.46■□□□□ 0.87
LMO3-216ENST00000537568 C1QBPQ07021 282 aaKnown RBP20.32■□□□□ 0.84
LMO3-216ENST00000537568 SLC4A2P04920 1241 aa20.14■□□□□ 0.81
LMO3-216ENST00000537568 U3KPZ7 1027 aaPredicted RBP20.1■□□□□ 0.81
LMO3-216ENST00000537568 SLC4A1APQ9BWU0 796 aaKnown RBP19.98■□□□□ 0.79
LMO3-216ENST00000537568 SPINK5Q9NQ38 1064 aaPredicted RBP19.71■□□□□ 0.75
LMO3-216ENST00000537568 CAPN15O75808 1086 aa19.64■□□□□ 0.73
LMO3-216ENST00000537568 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.6■□□□□ 0.73
LMO3-216ENST00000537568 HNRNPUL2Q1KMD3 747 aaKnown RBP19.6■□□□□ 0.73
LMO3-216ENST00000537568 NISCHQ9Y2I1 1504 aa19.59■□□□□ 0.73
LMO3-216ENST00000537568 MYCNP04198 464 aaPredicted RBP19.56■□□□□ 0.72
LMO3-216ENST00000537568 FOXD4L1Q9NU39 408 aa19.56■□□□□ 0.72
LMO3-216ENST00000537568 SAMD1Q6SPF0 538 aaPredicted RBP19.52■□□□□ 0.72
LMO3-216ENST00000537568 APLP2Q06481 763 aa19.5■□□□□ 0.71
LMO3-216ENST00000537568 ZBTB22O15209 634 aa19.44■□□□□ 0.7
LMO3-216ENST00000537568 DSG3P32926 999 aa19.44■□□□□ 0.7
LMO3-216ENST00000537568 TRHP20396 242 aaPredicted RBP19.42■□□□□ 0.7
LMO3-216ENST00000537568 ZNF219Q9P2Y4 722 aaPredicted RBP19.37■□□□□ 0.69
LMO3-216ENST00000537568 ABCC9O60706 1549 aa19.26■□□□□ 0.67
LMO3-216ENST00000537568 ABCB7O75027 752 aa19.24■□□□□ 0.67
LMO3-216ENST00000537568 ATF5Q9Y2D1 282 aaPredicted RBP19.12■□□□□ 0.65
LMO3-216ENST00000537568 POLA2Q14181 598 aa18.97■□□□□ 0.63
LMO3-216ENST00000537568 ATXN8OSP0DMR3 200 aa18.89■□□□□ 0.61
LMO3-216ENST00000537568 CSRNP3Q8WYN3 585 aa18.84■□□□□ 0.61
LMO3-216ENST00000537568 EHMT2Q96KQ7 1210 aa18.82■□□□□ 0.6
LMO3-216ENST00000537568 ZBTB12Q9Y330 459 aaPredicted RBP18.58■□□□□ 0.56
LMO3-216ENST00000537568 RBM42Q9BTD8 480 aaKnown RBP18.51■□□□□ 0.55
LMO3-216ENST00000537568 DNAJC5Q9H3Z4 198 aa18.46■□□□□ 0.55
LMO3-216ENST00000537568 OSCARQ8IYS5 282 aa18.38■□□□□ 0.53
LMO3-216ENST00000537568 FBLN2P98095 1184 aa18.29■□□□□ 0.52
LMO3-216ENST00000537568 MKRN4PQ13434 485 aaPredicted RBP18.25■□□□□ 0.51
LMO3-216ENST00000537568 AKT1S1Q96B36 256 aa18.17■□□□□ 0.5
LMO3-216ENST00000537568 SPDYE2BA6NHP3 402 aa18.05■□□□□ 0.48
LMO3-216ENST00000537568 SPDYE6P0CI01 402 aa18.05■□□□□ 0.48
LMO3-216ENST00000537568 SPDYE2Q495Y8 402 aa18.05■□□□□ 0.48
LMO3-216ENST00000537568 POTEHQ6S545 545 aa18.05■□□□□ 0.48
LMO3-216ENST00000537568 REM2Q8IYK8 340 aaPredicted RBP18.01■□□□□ 0.47
LMO3-216ENST00000537568 CHRDL2Q6WN34 429 aa17.99■□□□□ 0.47
LMO3-216ENST00000537568 CCDC180Q9P1Z9 1646 aa17.98■□□□□ 0.47
LMO3-216ENST00000537568 ZNF692Q9BU19 519 aaPredicted RBP17.9■□□□□ 0.46
LMO3-216ENST00000537568 SSUH2Q9Y2M2 353 aa17.87■□□□□ 0.45
LMO3-216ENST00000537568 PITPNM1O00562 1244 aa17.83■□□□□ 0.44
LMO3-216ENST00000537568 PABPN1Q86U42 306 aaKnown RBP eCLIP17.78■□□□□ 0.44
LMO3-216ENST00000537568 RB1CC1Q8TDY2 1594 aa17.7■□□□□ 0.42
LMO3-216ENST00000537568 PIP4P2Q8N4L2 257 aa17.65■□□□□ 0.42
LMO3-216ENST00000537568 SPDYE1Q8NFV5 336 aaPredicted RBP17.65■□□□□ 0.42
LMO3-216ENST00000537568 CLEC11AQ9Y240 323 aa17.63■□□□□ 0.41
LMO3-216ENST00000537568 FXR2P51116 673 aaKnown RBP eCLIP17.58■□□□□ 0.4
LMO3-216ENST00000537568 SPDYE4A6NLX3 237 aa17.55■□□□□ 0.4
LMO3-216ENST00000537568 CECR2Q9BXF3 1484 aa17.45■□□□□ 0.38
LMO3-216ENST00000537568 BICRAQ9NZM4 1560 aa17.4■□□□□ 0.38
LMO3-216ENST00000537568 PRR29P0C7W0 189 aa17.37■□□□□ 0.37
LMO3-216ENST00000537568 PRKAR2AP13861 404 aaKnown RBP17.37■□□□□ 0.37
LMO3-216ENST00000537568 UNC13AQ9UPW8 1703 aa17.33■□□□□ 0.37
LMO3-216ENST00000537568 NACADO15069 1562 aa17.32■□□□□ 0.36
LMO3-216ENST00000537568 CC2D2AQ9P2K1 1620 aa17.31■□□□□ 0.36
LMO3-216ENST00000537568 CHADLQ6NUI6 762 aa17.27■□□□□ 0.36
LMO3-216ENST00000537568 STAG3Q9UJ98 1225 aa17.22■□□□□ 0.35
LMO3-216ENST00000537568 HAX1O00165 279 aa17.21■□□□□ 0.35
LMO3-216ENST00000537568 PROM2Q8N271 834 aa17.19■□□□□ 0.34
LMO3-216ENST00000537568 SP7Q8TDD2 431 aaPredicted RBP17.08■□□□□ 0.32
LMO3-216ENST00000537568 FKBP8Q14318 412 aa17.07■□□□□ 0.32
LMO3-216ENST00000537568 TRIM41Q8WV44 630 aa17.07■□□□□ 0.32
LMO3-216ENST00000537568 EVX2Q03828 476 aa17.06■□□□□ 0.32
LMO3-216ENST00000537568 CREBZFQ9NS37 354 aa17.04■□□□□ 0.32
LMO3-216ENST00000537568 FARP1Q9Y4F1 1045 aaPredicted RBP17.03■□□□□ 0.32
LMO3-216ENST00000537568 CUX2O14529 1486 aa17.03■□□□□ 0.32
LMO3-216ENST00000537568 C19orf67A6NJJ6 358 aa17.01■□□□□ 0.31
LMO3-216ENST00000537568 EIF4G1Q04637 1599 aaKnown RBP16.99■□□□□ 0.31
LMO3-216ENST00000537568 DCAF8L2P0C7V8 631 aa16.94■□□□□ 0.3
LMO3-216ENST00000537568 SHROOM4Q9ULL8 1493 aa16.89■□□□□ 0.29
LMO3-216ENST00000537568 CD44P16070 742 aaKnown RBP16.84■□□□□ 0.29
LMO3-216ENST00000537568 MNX1P50219 401 aaPredicted RBP16.81■□□□□ 0.28
LMO3-216ENST00000537568 MYO15BQ96JP2 1530 aa16.73■□□□□ 0.27
LMO3-216ENST00000537568 NPM1P06748 294 aaKnown RBP eCLIP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms