RNA–Protein interactions for RNA: ENST00000537556.1

SRGAP1-202, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 2,976 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-202ENST00000537556 PELP1Q8IZL8 1130 aaKnown RBP15.03■□□□□ -0
SRGAP1-202ENST00000537556 MYT1Q01538 1121 aa14.7□□□□□ -0.06
SRGAP1-202ENST00000537556 HRCP23327 699 aa14.5□□□□□ -0.09
SRGAP1-202ENST00000537556 NISCHQ9Y2I1 1504 aa14.31□□□□□ -0.12
SRGAP1-202ENST00000537556 PPARGC1BQ86YN6 1023 aaKnown RBP13.99□□□□□ -0.17
SRGAP1-202ENST00000537556 TTBK1Q5TCY1 1321 aaPredicted RBP13.98□□□□□ -0.17
SRGAP1-202ENST00000537556 SCAF1Q9H7N4 1312 aaKnown RBP13.94□□□□□ -0.18
SRGAP1-202ENST00000537556 PCGF6Q9BYE7 350 aa13.86□□□□□ -0.19
SRGAP1-202ENST00000537556 ZEB1P37275 1124 aaPredicted RBP13.58□□□□□ -0.24
SRGAP1-202ENST00000537556 ACIN1Q9UKV3 1341 aaKnown RBP13.53□□□□□ -0.24
SRGAP1-202ENST00000537556 MYO15BQ96JP2 1530 aa13.45□□□□□ -0.26
SRGAP1-202ENST00000537556 DCAF1Q9Y4B6 1507 aa13.43□□□□□ -0.26
SRGAP1-202ENST00000537556 CENPBP07199 599 aaPredicted RBP13.42□□□□□ -0.26
SRGAP1-202ENST00000537556 GTF3C3Q9Y5Q9 886 aa13.39□□□□□ -0.27
SRGAP1-202ENST00000537556 TRIM26Q12899 539 aaPredicted RBP13.39□□□□□ -0.27
SRGAP1-202ENST00000537556 BCL11AQ9H165 835 aa13.38□□□□□ -0.27
SRGAP1-202ENST00000537556 NEUROD1Q13562 356 aa13.37□□□□□ -0.27
SRGAP1-202ENST00000537556 CCDC180Q9P1Z9 1646 aa13.34□□□□□ -0.27
SRGAP1-202ENST00000537556 PRKCSHP14314 528 aaPredicted RBP13.26□□□□□ -0.29
SRGAP1-202ENST00000537556 CHIC1Q5VXU3 224 aa13.25□□□□□ -0.29
SRGAP1-202ENST00000537556 SUPT5HO00267 1087 aaKnown RBP13.22□□□□□ -0.29
SRGAP1-202ENST00000537556 ERICH6Q7L0X2 663 aa13.2□□□□□ -0.3
SRGAP1-202ENST00000537556 FAM9AQ8IZU1 332 aaPredicted RBP13.2□□□□□ -0.3
SRGAP1-202ENST00000537556 ANP32EQ9BTT0 268 aa13.09□□□□□ -0.31
SRGAP1-202ENST00000537556 DIEXFQ68CQ4 756 aaKnown RBP12.99□□□□□ -0.33
SRGAP1-202ENST00000537556 SHROOM4Q9ULL8 1493 aa12.98□□□□□ -0.33
SRGAP1-202ENST00000537556 APLP2Q06481 763 aa12.96□□□□□ -0.33
SRGAP1-202ENST00000537556 LOC105371045A0A1W2PR82 267 aa12.92□□□□□ -0.34
SRGAP1-202ENST00000537556 CSRNP3Q8WYN3 585 aa12.87□□□□□ -0.35
SRGAP1-202ENST00000537556 CLSPNQ9HAW4 1339 aa12.82□□□□□ -0.36
SRGAP1-202ENST00000537556 YTHDC1Q96MU7 727 aaKnown RBP12.74□□□□□ -0.37
SRGAP1-202ENST00000537556 CCER1Q8TC90 406 aaPredicted RBP12.72□□□□□ -0.37
SRGAP1-202ENST00000537556 TRIM41Q8WV44 630 aa12.72□□□□□ -0.37
SRGAP1-202ENST00000537556 TSHZ2Q9NRE2 1034 aa12.71□□□□□ -0.37
SRGAP1-202ENST00000537556 ZNF316A6NFI3 1004 aaPredicted RBP12.63□□□□□ -0.39
SRGAP1-202ENST00000537556 SUPT16HQ9Y5B9 1047 aaKnown RBP12.63□□□□□ -0.39
SRGAP1-202ENST00000537556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.63□□□□□ -0.39
SRGAP1-202ENST00000537556 MIER1Q8N108 512 aa12.54□□□□□ -0.4
SRGAP1-202ENST00000537556 MYT1LQ9UL68 1186 aa12.52□□□□□ -0.4
SRGAP1-202ENST00000537556 ABCC9O60706 1549 aa12.48□□□□□ -0.41
SRGAP1-202ENST00000537556 ANO8Q9HCE9 1232 aaPredicted RBP12.43□□□□□ -0.42
SRGAP1-202ENST00000537556 UBE2Q2Q8WVN8 375 aa12.39□□□□□ -0.43
SRGAP1-202ENST00000537556 RBM19Q9Y4C8 960 aaKnown RBP12.39□□□□□ -0.43
SRGAP1-202ENST00000537556 ERICH6BQ5W0A0 696 aa12.38□□□□□ -0.43
SRGAP1-202ENST00000537556 DEKP35659 375 aaKnown RBP12.29□□□□□ -0.44
SRGAP1-202ENST00000537556 ZCCHC6Q5VYS8 1495 aaKnown RBP12.27□□□□□ -0.45
SRGAP1-202ENST00000537556 MSH5O43196 834 aa12.26□□□□□ -0.45
SRGAP1-202ENST00000537556 FANCIQ9NVI1 1328 aa12.26□□□□□ -0.45
SRGAP1-202ENST00000537556 SALL2Q9Y467 1007 aaPredicted RBP12.24□□□□□ -0.45
SRGAP1-202ENST00000537556 EIF5BO60841 1220 aaKnown RBP12.24□□□□□ -0.45
SRGAP1-202ENST00000537556 SLC24A1O60721 1099 aa12.23□□□□□ -0.45
SRGAP1-202ENST00000537556 BCANQ96GW7 911 aa12.19□□□□□ -0.46
SRGAP1-202ENST00000537556 FKBP8Q14318 412 aa12.18□□□□□ -0.46
SRGAP1-202ENST00000537556 NEFLP07196 543 aa12.17□□□□□ -0.46
SRGAP1-202ENST00000537556 RB1CC1Q8TDY2 1594 aa12.14□□□□□ -0.47
SRGAP1-202ENST00000537556 CCDC136Q96JN2 1154 aa12.14□□□□□ -0.47
SRGAP1-202ENST00000537556 NACADO15069 1562 aa12.13□□□□□ -0.47
SRGAP1-202ENST00000537556 EHMT2Q96KQ7 1210 aa12.07□□□□□ -0.48
SRGAP1-202ENST00000537556 PKNOX2Q96KN3 472 aa12.06□□□□□ -0.48
SRGAP1-202ENST00000537556 DAXXQ9UER7 740 aaPredicted RBP12.06□□□□□ -0.48
SRGAP1-202ENST00000537556 CDK11AQ9UQ88 783 aaPredicted RBP12.06□□□□□ -0.48
SRGAP1-202ENST00000537556 WRNQ14191 1432 aaPredicted RBP eCLIP12.03□□□□□ -0.48
SRGAP1-202ENST00000537556 ITGAEP38570 1179 aa12.01□□□□□ -0.49
SRGAP1-202ENST00000537556 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.01□□□□□ -0.49
SRGAP1-202ENST00000537556 RTL5Q5HYW3 569 aaPredicted RBP11.97□□□□□ -0.49
SRGAP1-202ENST00000537556 IL27Q8NEV9 243 aa11.96□□□□□ -0.5
SRGAP1-202ENST00000537556 NBR1Q14596 966 aa11.94□□□□□ -0.5
SRGAP1-202ENST00000537556 NOP58Q9Y2X3 529 aaKnown RBP11.94□□□□□ -0.5
SRGAP1-202ENST00000537556 RTN4Q9NQC3 1192 aaKnown RBP11.92□□□□□ -0.5
SRGAP1-202ENST00000537556 GLIPR1L2Q4G1C9 344 aa11.89□□□□□ -0.51
SRGAP1-202ENST00000537556 PODXL2Q9NZ53 605 aa11.88□□□□□ -0.51
SRGAP1-202ENST00000537556 UNC13AQ9UPW8 1703 aa11.85□□□□□ -0.51
SRGAP1-202ENST00000537556 KCNH8Q96L42 1107 aa11.85□□□□□ -0.51
SRGAP1-202ENST00000537556 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
SRGAP1-202ENST00000537556 C11orf95C9JLR9 678 aaPredicted RBP11.83□□□□□ -0.52
SRGAP1-202ENST00000537556 PLEKHG5O94827 1062 aa11.82□□□□□ -0.52
SRGAP1-202ENST00000537556 DCAF8L2P0C7V8 631 aa11.8□□□□□ -0.52
SRGAP1-202ENST00000537556 RSPH6AQ9H0K4 717 aa11.8□□□□□ -0.52
SRGAP1-202ENST00000537556 CEP162Q5TB80 1403 aa11.79□□□□□ -0.52
SRGAP1-202ENST00000537556 PAK3O75914 559 aaPredicted RBP11.78□□□□□ -0.52
SRGAP1-202ENST00000537556 USP35Q9P2H5 1018 aa11.77□□□□□ -0.53
SRGAP1-202ENST00000537556 WASHC2AQ641Q2 1341 aa11.76□□□□□ -0.53
SRGAP1-202ENST00000537556 CCER2I3L3R5 266 aa11.76□□□□□ -0.53
SRGAP1-202ENST00000537556 ANP32AP39687 249 aaKnown RBP11.75□□□□□ -0.53
SRGAP1-202ENST00000537556 PPP4R2Q9NY27 417 aa11.75□□□□□ -0.53
SRGAP1-202ENST00000537556 ZBTB47Q9UFB7 747 aaPredicted RBP11.75□□□□□ -0.53
SRGAP1-202ENST00000537556 TRIM52Q96A61 297 aa11.74□□□□□ -0.53
SRGAP1-202ENST00000537556 IPO9Q96P70 1041 aaKnown RBP11.74□□□□□ -0.53
SRGAP1-202ENST00000537556 BICRAQ9NZM4 1560 aa11.74□□□□□ -0.53
SRGAP1-202ENST00000537556 WASHC2CQ9Y4E1 1318 aa11.73□□□□□ -0.53
SRGAP1-202ENST00000537556 TNIKQ9UKE5 1360 aa11.71□□□□□ -0.53
SRGAP1-202ENST00000537556 ZMYND15Q9H091 742 aa11.71□□□□□ -0.54
SRGAP1-202ENST00000537556 RSF1Q96T23 1441 aaPredicted RBP11.71□□□□□ -0.54
SRGAP1-202ENST00000537556 DHX57Q6P158 1386 aaKnown RBP11.69□□□□□ -0.54
SRGAP1-202ENST00000537556 VSIG10Q8N0Z9 540 aa11.67□□□□□ -0.54
SRGAP1-202ENST00000537556 ANP32CO43423 234 aa11.66□□□□□ -0.54
SRGAP1-202ENST00000537556 TIMELESSQ9UNS1 1208 aa11.65□□□□□ -0.54
SRGAP1-202ENST00000537556 NEFMP07197 916 aa11.64□□□□□ -0.55
SRGAP1-202ENST00000537556 DDX10Q13206 875 aaKnown RBP11.64□□□□□ -0.55
SRGAP1-202ENST00000537556 IRX6P78412 446 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms