RNA–Protein interactions for RNA: ENST00000511822.1

CDH9-204, Transcript of cadherin 9, humanhuman

TSL 4

Gene CDH9, Length 532 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9-204ENST00000511822 AEBP2Q6ZN18 517 aaPredicted RBP28.25■■■□□ 2.11
CDH9-204ENST00000511822 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
CDH9-204ENST00000511822 SENP3Q9H4L4 574 aaPredicted RBP24.03■■□□□ 1.44
CDH9-204ENST00000511822 PHF23Q9BUL5 403 aaPredicted RBP23.87■■□□□ 1.41
CDH9-204ENST00000511822 FOXD1Q16676 465 aa22.35■■□□□ 1.17
CDH9-204ENST00000511822 PLPPR3Q6T4P5 718 aa21.89■■□□□ 1.09
CDH9-204ENST00000511822 PPP6R1Q9UPN7 881 aa21.19■□□□□ 0.98
CDH9-204ENST00000511822 ADRA2BP18089 450 aa21.13■□□□□ 0.97
CDH9-204ENST00000511822 PIAS4Q8N2W9 510 aaPredicted RBP20.97■□□□□ 0.95
CDH9-204ENST00000511822 MSH5O43196 834 aa20.77■□□□□ 0.92
CDH9-204ENST00000511822 POTEDQ86YR6 584 aa19.63■□□□□ 0.73
CDH9-204ENST00000511822 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
CDH9-204ENST00000511822 MAPK8IP2Q13387 824 aaPredicted RBP19.3■□□□□ 0.68
CDH9-204ENST00000511822 PPP4R3CPQ6ZMV5 832 aa19.23■□□□□ 0.67
CDH9-204ENST00000511822 DMRT2Q9Y5R5 561 aa19.12■□□□□ 0.65
CDH9-204ENST00000511822 CNKSR2Q8WXI2 1034 aa18.79■□□□□ 0.6
CDH9-204ENST00000511822 NCBP3Q53F19 620 aaKnown RBP18.6■□□□□ 0.57
CDH9-204ENST00000511822 HOXD11P31277 338 aaPredicted RBP18.57■□□□□ 0.56
CDH9-204ENST00000511822 RNF216Q9NWF9 866 aaPredicted RBP18.53■□□□□ 0.56
CDH9-204ENST00000511822 NPM3O75607 178 aaKnown RBP18.35■□□□□ 0.53
CDH9-204ENST00000511822 KCNA4P22459 653 aa18.33■□□□□ 0.52
CDH9-204ENST00000511822 DCAF8L1A6NGE4 600 aa18.27■□□□□ 0.52
CDH9-204ENST00000511822 DNAJC5BQ9UF47 199 aa17.91■□□□□ 0.46
CDH9-204ENST00000511822 RNF39Q9H2S5 420 aa17.77■□□□□ 0.44
CDH9-204ENST00000511822 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.66■□□□□ 0.42
CDH9-204ENST00000511822 CACNB1Q02641 598 aaPredicted RBP17.57■□□□□ 0.4
CDH9-204ENST00000511822 C1QBPQ07021 282 aaKnown RBP17.52■□□□□ 0.4
CDH9-204ENST00000511822 SLC4A2P04920 1241 aa17.43■□□□□ 0.38
CDH9-204ENST00000511822 SLC4A1APQ9BWU0 796 aaKnown RBP17.37■□□□□ 0.37
CDH9-204ENST00000511822 U3KPZ7 1027 aaPredicted RBP17.37■□□□□ 0.37
CDH9-204ENST00000511822 SPINK5Q9NQ38 1064 aaPredicted RBP16.99■□□□□ 0.31
CDH9-204ENST00000511822 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
CDH9-204ENST00000511822 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.98■□□□□ 0.31
CDH9-204ENST00000511822 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
CDH9-204ENST00000511822 MYCNP04198 464 aaPredicted RBP16.96■□□□□ 0.31
CDH9-204ENST00000511822 CAPN15O75808 1086 aa16.92■□□□□ 0.3
CDH9-204ENST00000511822 SAMD1Q6SPF0 538 aaPredicted RBP16.91■□□□□ 0.3
CDH9-204ENST00000511822 APLP2Q06481 763 aa16.9■□□□□ 0.3
CDH9-204ENST00000511822 ZBTB22O15209 634 aa16.88■□□□□ 0.29
CDH9-204ENST00000511822 DSG3P32926 999 aa16.76■□□□□ 0.27
CDH9-204ENST00000511822 TRHP20396 242 aaPredicted RBP16.74■□□□□ 0.27
CDH9-204ENST00000511822 ZNF219Q9P2Y4 722 aaPredicted RBP16.74■□□□□ 0.27
CDH9-204ENST00000511822 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
CDH9-204ENST00000511822 ABCB7O75027 752 aa16.57■□□□□ 0.24
CDH9-204ENST00000511822 ATF5Q9Y2D1 282 aaPredicted RBP16.54■□□□□ 0.24
CDH9-204ENST00000511822 ATXN8OSP0DMR3 200 aa16.44■□□□□ 0.22
CDH9-204ENST00000511822 CSRNP3Q8WYN3 585 aa16.43■□□□□ 0.22
CDH9-204ENST00000511822 EHMT2Q96KQ7 1210 aa16.41■□□□□ 0.22
CDH9-204ENST00000511822 POLA2Q14181 598 aa16.39■□□□□ 0.21
CDH9-204ENST00000511822 ZBTB12Q9Y330 459 aaPredicted RBP16.1■□□□□ 0.17
CDH9-204ENST00000511822 RBM42Q9BTD8 480 aaKnown RBP15.97■□□□□ 0.15
CDH9-204ENST00000511822 OSCARQ8IYS5 282 aa15.87■□□□□ 0.13
CDH9-204ENST00000511822 FBLN2P98095 1184 aa15.85■□□□□ 0.13
CDH9-204ENST00000511822 MKRN4PQ13434 485 aaPredicted RBP15.81■□□□□ 0.12
CDH9-204ENST00000511822 AKT1S1Q96B36 256 aa15.69■□□□□ 0.1
CDH9-204ENST00000511822 SPDYE2BA6NHP3 402 aa15.63■□□□□ 0.09
CDH9-204ENST00000511822 SPDYE6P0CI01 402 aa15.63■□□□□ 0.09
CDH9-204ENST00000511822 SPDYE2Q495Y8 402 aa15.63■□□□□ 0.09
CDH9-204ENST00000511822 REM2Q8IYK8 340 aaPredicted RBP15.54■□□□□ 0.08
CDH9-204ENST00000511822 ZNF692Q9BU19 519 aaPredicted RBP15.49■□□□□ 0.07
CDH9-204ENST00000511822 CHRDL2Q6WN34 429 aa15.48■□□□□ 0.07
CDH9-204ENST00000511822 SSUH2Q9Y2M2 353 aa15.48■□□□□ 0.07
CDH9-204ENST00000511822 POTEHQ6S545 545 aa15.45■□□□□ 0.06
CDH9-204ENST00000511822 PITPNM1O00562 1244 aa15.38■□□□□ 0.05
CDH9-204ENST00000511822 ABCC9O60706 1549 aa15.36■□□□□ 0.05
CDH9-204ENST00000511822 PABPN1Q86U42 306 aaKnown RBP eCLIP15.29■□□□□ 0.04
CDH9-204ENST00000511822 SPDYE1Q8NFV5 336 aaPredicted RBP15.26■□□□□ 0.03
CDH9-204ENST00000511822 SPDYE4A6NLX3 237 aa15.24■□□□□ 0.03
CDH9-204ENST00000511822 PIP4P2Q8N4L2 257 aa15.2■□□□□ 0.02
CDH9-204ENST00000511822 CLEC11AQ9Y240 323 aa15.19■□□□□ 0.02
CDH9-204ENST00000511822 FXR2P51116 673 aaKnown RBP eCLIP15.17■□□□□ 0.02
CDH9-204ENST00000511822 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
CDH9-204ENST00000511822 PRR29P0C7W0 189 aa15.01□□□□□ -0.01
CDH9-204ENST00000511822 PRKAR2AP13861 404 aaKnown RBP14.97□□□□□ -0.01
CDH9-204ENST00000511822 PROM2Q8N271 834 aa14.97□□□□□ -0.01
CDH9-204ENST00000511822 STAG3Q9UJ98 1225 aa14.94□□□□□ -0.02
CDH9-204ENST00000511822 CHADLQ6NUI6 762 aa14.88□□□□□ -0.03
CDH9-204ENST00000511822 FKBP8Q14318 412 aa14.86□□□□□ -0.03
CDH9-204ENST00000511822 HAX1O00165 279 aa14.79□□□□□ -0.04
CDH9-204ENST00000511822 CREBZFQ9NS37 354 aa14.75□□□□□ -0.05
CDH9-204ENST00000511822 FARP1Q9Y4F1 1045 aaPredicted RBP14.72□□□□□ -0.05
CDH9-204ENST00000511822 C19orf67A6NJJ6 358 aa14.67□□□□□ -0.06
CDH9-204ENST00000511822 SP7Q8TDD2 431 aaPredicted RBP14.67□□□□□ -0.06
CDH9-204ENST00000511822 EVX2Q03828 476 aa14.66□□□□□ -0.06
CDH9-204ENST00000511822 MNX1P50219 401 aaPredicted RBP14.55□□□□□ -0.08
CDH9-204ENST00000511822 RB1CC1Q8TDY2 1594 aa14.53□□□□□ -0.08
CDH9-204ENST00000511822 CD44P16070 742 aaKnown RBP14.52□□□□□ -0.09
CDH9-204ENST00000511822 NPM1P06748 294 aaKnown RBP eCLIP14.47□□□□□ -0.09
CDH9-204ENST00000511822 MIER1Q8N108 512 aa14.47□□□□□ -0.09
CDH9-204ENST00000511822 FBXO3Q9UK99 471 aa14.44□□□□□ -0.1
CDH9-204ENST00000511822 PLEKHG5O94827 1062 aa14.43□□□□□ -0.1
CDH9-204ENST00000511822 PLCD3Q8N3E9 789 aa14.41□□□□□ -0.1
CDH9-204ENST00000511822 NACADO15069 1562 aa14.38□□□□□ -0.11
CDH9-204ENST00000511822 ZRANB1Q9UGI0 708 aa14.37□□□□□ -0.11
CDH9-204ENST00000511822 GABBR2O75899 941 aa14.35□□□□□ -0.11
CDH9-204ENST00000511822 ZNF579Q8NAF0 562 aaKnown RBP14.33□□□□□ -0.12
CDH9-204ENST00000511822 PAK3O75914 559 aaPredicted RBP14.32□□□□□ -0.12
CDH9-204ENST00000511822 ZBTB47Q9UFB7 747 aaPredicted RBP14.28□□□□□ -0.12
CDH9-204ENST00000511822 VASPP50552 380 aaPredicted RBP14.27□□□□□ -0.13
CDH9-204ENST00000511822 CLCN6P51797 869 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms