RNA–Protein interactions for RNA: ENST00000509912.5

NEK1-204, Transcript of NIMA related kinase 1, humanhuman

TSL 2

Gene NEK1, Length 2,971 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-204ENST00000509912 AEBP2Q6ZN18 517 aaPredicted RBP16.35■□□□□ 0.21
NEK1-204ENST00000509912 CHIC1Q5VXU3 224 aa16.32■□□□□ 0.2
NEK1-204ENST00000509912 PHF23Q9BUL5 403 aaPredicted RBP14.68□□□□□ -0.06
NEK1-204ENST00000509912 PLPPR3Q6T4P5 718 aa13.5□□□□□ -0.25
NEK1-204ENST00000509912 SENP3Q9H4L4 574 aaPredicted RBP13.39□□□□□ -0.27
NEK1-204ENST00000509912 ADRA2BP18089 450 aa13.09□□□□□ -0.31
NEK1-204ENST00000509912 EHMT2Q96KQ7 1210 aa12.96□□□□□ -0.33
NEK1-204ENST00000509912 PPP6R1Q9UPN7 881 aa12.87□□□□□ -0.35
NEK1-204ENST00000509912 KCNA4P22459 653 aa12.82□□□□□ -0.36
NEK1-204ENST00000509912 FOXD1Q16676 465 aa12.62□□□□□ -0.39
NEK1-204ENST00000509912 NISCHQ9Y2I1 1504 aa12.36□□□□□ -0.43
NEK1-204ENST00000509912 CSRNP3Q8WYN3 585 aa12.26□□□□□ -0.45
NEK1-204ENST00000509912 SLC4A1APQ9BWU0 796 aaKnown RBP12.16□□□□□ -0.46
NEK1-204ENST00000509912 PPP4R3CPQ6ZMV5 832 aa12.11□□□□□ -0.47
NEK1-204ENST00000509912 PIAS4Q8N2W9 510 aaPredicted RBP12.07□□□□□ -0.48
NEK1-204ENST00000509912 ZBTB22O15209 634 aa11.88□□□□□ -0.51
NEK1-204ENST00000509912 NPM3O75607 178 aaKnown RBP11.88□□□□□ -0.51
NEK1-204ENST00000509912 NCBP3Q53F19 620 aaKnown RBP11.73□□□□□ -0.53
NEK1-204ENST00000509912 MAPK8IP2Q13387 824 aaPredicted RBP11.55□□□□□ -0.56
NEK1-204ENST00000509912 CCDC180Q9P1Z9 1646 aa11.47□□□□□ -0.57
NEK1-204ENST00000509912 CNKSR2Q8WXI2 1034 aa11.46□□□□□ -0.57
NEK1-204ENST00000509912 RTN4Q9NQC3 1192 aaKnown RBP11.42□□□□□ -0.58
NEK1-204ENST00000509912 FOXD4L1Q9NU39 408 aa11.33□□□□□ -0.6
NEK1-204ENST00000509912 SCAF1Q9H7N4 1312 aaKnown RBP11.26□□□□□ -0.61
NEK1-204ENST00000509912 SLC24A1O60721 1099 aa11.25□□□□□ -0.61
NEK1-204ENST00000509912 SLC4A2P04920 1241 aa11.1□□□□□ -0.63
NEK1-204ENST00000509912 FKBP8Q14318 412 aa11.08□□□□□ -0.64
NEK1-204ENST00000509912 RNF216Q9NWF9 866 aaPredicted RBP11.04□□□□□ -0.64
NEK1-204ENST00000509912 MSH5O43196 834 aa11.02□□□□□ -0.65
NEK1-204ENST00000509912 AMER1Q5JTC6 1135 aaPredicted RBP10.98□□□□□ -0.65
NEK1-204ENST00000509912 MYO15BQ96JP2 1530 aa10.93□□□□□ -0.66
NEK1-204ENST00000509912 DNAJC5BQ9UF47 199 aa10.85□□□□□ -0.67
NEK1-204ENST00000509912 HOXD11P31277 338 aaPredicted RBP10.83□□□□□ -0.68
NEK1-204ENST00000509912 ATF5Q9Y2D1 282 aaPredicted RBP10.83□□□□□ -0.68
NEK1-204ENST00000509912 DMRT2Q9Y5R5 561 aa10.82□□□□□ -0.68
NEK1-204ENST00000509912 MYCNP04198 464 aaPredicted RBP10.75□□□□□ -0.69
NEK1-204ENST00000509912 SHROOM4Q9ULL8 1493 aa10.72□□□□□ -0.69
NEK1-204ENST00000509912 DCAF8L1A6NGE4 600 aa10.71□□□□□ -0.69
NEK1-204ENST00000509912 DCAF1Q9Y4B6 1507 aa10.7□□□□□ -0.7
NEK1-204ENST00000509912 NACADO15069 1562 aa10.7□□□□□ -0.7
NEK1-204ENST00000509912 RB1CC1Q8TDY2 1594 aa10.62□□□□□ -0.71
NEK1-204ENST00000509912 ATXN8OSP0DMR3 200 aa10.59□□□□□ -0.71
NEK1-204ENST00000509912 ABCC9O60706 1549 aa10.53□□□□□ -0.72
NEK1-204ENST00000509912 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.5□□□□□ -0.73
NEK1-204ENST00000509912 U3KPZ7 1027 aaPredicted RBP10.45□□□□□ -0.74
NEK1-204ENST00000509912 DCAF8L2P0C7V8 631 aa10.41□□□□□ -0.74
NEK1-204ENST00000509912 PRKCSHP14314 528 aaPredicted RBP10.35□□□□□ -0.75
NEK1-204ENST00000509912 ZCCHC6Q5VYS8 1495 aaKnown RBP10.32□□□□□ -0.76
NEK1-204ENST00000509912 ZNF219Q9P2Y4 722 aaPredicted RBP10.28□□□□□ -0.76
NEK1-204ENST00000509912 HAP1P54257 671 aaPredicted RBP10.28□□□□□ -0.76
NEK1-204ENST00000509912 PLCB2Q00722 1185 aa10.28□□□□□ -0.76
NEK1-204ENST00000509912 MKRN4PQ13434 485 aaPredicted RBP10.27□□□□□ -0.77
NEK1-204ENST00000509912 UNC13AQ9UPW8 1703 aa10.27□□□□□ -0.77
NEK1-204ENST00000509912 SAMD1Q6SPF0 538 aaPredicted RBP10.26□□□□□ -0.77
NEK1-204ENST00000509912 SPDYE4A6NLX3 237 aa10.26□□□□□ -0.77
NEK1-204ENST00000509912 IFNLR1Q8IU57 520 aaPredicted RBP10.23□□□□□ -0.77
NEK1-204ENST00000509912 BICRAQ9NZM4 1560 aa10.22□□□□□ -0.77
NEK1-204ENST00000509912 VASPP50552 380 aaPredicted RBP10.18□□□□□ -0.78
NEK1-204ENST00000509912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.17□□□□□ -0.78
NEK1-204ENST00000509912 HNRNPUL2Q1KMD3 747 aaKnown RBP10.17□□□□□ -0.78
NEK1-204ENST00000509912 TRHP20396 242 aaPredicted RBP10.14□□□□□ -0.79
NEK1-204ENST00000509912 SPINK5Q9NQ38 1064 aaPredicted RBP10.14□□□□□ -0.79
NEK1-204ENST00000509912 PKD2Q13563 968 aa10.12□□□□□ -0.79
NEK1-204ENST00000509912 FBXO3Q9UK99 471 aa10.1□□□□□ -0.79
NEK1-204ENST00000509912 FBLN2P98095 1184 aa10.08□□□□□ -0.8
NEK1-204ENST00000509912 POLA2Q14181 598 aa10.06□□□□□ -0.8
NEK1-204ENST00000509912 KDM2AQ9Y2K7 1162 aa10.02□□□□□ -0.81
NEK1-204ENST00000509912 NPM1P06748 294 aaKnown RBP eCLIP9.99□□□□□ -0.81
NEK1-204ENST00000509912 TAOK2Q9UL54 1235 aa9.99□□□□□ -0.81
NEK1-204ENST00000509912 ABCB7O75027 752 aa9.98□□□□□ -0.81
NEK1-204ENST00000509912 CFAP44Q96MT7 982 aa9.98□□□□□ -0.81
NEK1-204ENST00000509912 PROM2Q8N271 834 aa9.98□□□□□ -0.81
NEK1-204ENST00000509912 TPRNQ4KMQ1 711 aa9.96□□□□□ -0.82
NEK1-204ENST00000509912 PAXIP1Q6ZW49 1069 aaPredicted RBP9.95□□□□□ -0.82
NEK1-204ENST00000509912 CAPN15O75808 1086 aa9.94□□□□□ -0.82
NEK1-204ENST00000509912 BCANQ96GW7 911 aa9.94□□□□□ -0.82
NEK1-204ENST00000509912 KLHL34Q8N239 644 aa9.93□□□□□ -0.82
NEK1-204ENST00000509912 RGL2O15211 777 aa9.89□□□□□ -0.83
NEK1-204ENST00000509912 EIF4G1Q04637 1599 aaKnown RBP9.88□□□□□ -0.83
NEK1-204ENST00000509912 PEG3Q9GZU2 1588 aa9.88□□□□□ -0.83
NEK1-204ENST00000509912 ECM2O94769 699 aaPredicted RBP9.88□□□□□ -0.83
NEK1-204ENST00000509912 TSHZ2Q9NRE2 1034 aa9.86□□□□□ -0.83
NEK1-204ENST00000509912 CC2D2AQ9P2K1 1620 aa9.82□□□□□ -0.84
NEK1-204ENST00000509912 HMGXB3Q12766 1538 aa9.81□□□□□ -0.84
NEK1-204ENST00000509912 VSIG10Q8N0Z9 540 aa9.81□□□□□ -0.84
NEK1-204ENST00000509912 SMARCA2P51531 1590 aa9.8□□□□□ -0.84
NEK1-204ENST00000509912 NCAPD3P42695 1498 aa9.78□□□□□ -0.84
NEK1-204ENST00000509912 PLCD3Q8N3E9 789 aa9.77□□□□□ -0.85
NEK1-204ENST00000509912 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.77□□□□□ -0.85
NEK1-204ENST00000509912 OSCARQ8IYS5 282 aa9.76□□□□□ -0.85
NEK1-204ENST00000509912 CHGAP10645 457 aaKnown RBP9.75□□□□□ -0.85
NEK1-204ENST00000509912 APLP2Q06481 763 aa9.75□□□□□ -0.85
NEK1-204ENST00000509912 SPOCK2Q92563 424 aa9.75□□□□□ -0.85
NEK1-204ENST00000509912 PABPN1Q86U42 306 aaKnown RBP eCLIP9.74□□□□□ -0.85
NEK1-204ENST00000509912 CIZ1Q9ULV3 898 aaPredicted RBP9.73□□□□□ -0.85
NEK1-204ENST00000509912 BBXQ8WY36 941 aaPredicted RBP9.72□□□□□ -0.85
NEK1-204ENST00000509912 ZNF692Q9BU19 519 aaPredicted RBP9.72□□□□□ -0.85
NEK1-204ENST00000509912 MIER1Q8N108 512 aa9.72□□□□□ -0.85
NEK1-204ENST00000509912 SCRIBQ14160 1630 aa9.71□□□□□ -0.86
NEK1-204ENST00000509912 POTEDQ86YR6 584 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms