RNA–Protein interactions for RNA: ENST00000498569.5

NF1-217, Transcript of neurofibromin 1, humanhuman

TSL 2

Gene NF1, Length 620 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-217ENST00000498569 AEBP2Q6ZN18 517 aaPredicted RBP22.59■■□□□ 1.21
NF1-217ENST00000498569 CHIC1Q5VXU3 224 aa21.34■■□□□ 1.01
NF1-217ENST00000498569 SENP3Q9H4L4 574 aaPredicted RBP19.46■□□□□ 0.71
NF1-217ENST00000498569 PHF23Q9BUL5 403 aaPredicted RBP19.09■□□□□ 0.65
NF1-217ENST00000498569 FOXD1Q16676 465 aa18.06■□□□□ 0.48
NF1-217ENST00000498569 MSH5O43196 834 aa17.1■□□□□ 0.33
NF1-217ENST00000498569 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
NF1-217ENST00000498569 POTEDQ86YR6 584 aa16.95■□□□□ 0.3
NF1-217ENST00000498569 PIAS4Q8N2W9 510 aaPredicted RBP16.89■□□□□ 0.29
NF1-217ENST00000498569 PPP6R1Q9UPN7 881 aa16.65■□□□□ 0.26
NF1-217ENST00000498569 ADRA2BP18089 450 aa16.62■□□□□ 0.25
NF1-217ENST00000498569 DMRT2Q9Y5R5 561 aa15.36■□□□□ 0.05
NF1-217ENST00000498569 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
NF1-217ENST00000498569 MAPK8IP2Q13387 824 aaPredicted RBP15.29■□□□□ 0.04
NF1-217ENST00000498569 PPP4R3CPQ6ZMV5 832 aa14.83□□□□□ -0.04
NF1-217ENST00000498569 CACNB1Q02641 598 aaPredicted RBP14.76□□□□□ -0.05
NF1-217ENST00000498569 DCAF8L1A6NGE4 600 aa14.74□□□□□ -0.05
NF1-217ENST00000498569 HOXD11P31277 338 aaPredicted RBP14.7□□□□□ -0.06
NF1-217ENST00000498569 CNKSR2Q8WXI2 1034 aa14.64□□□□□ -0.07
NF1-217ENST00000498569 RNF216Q9NWF9 866 aaPredicted RBP14.56□□□□□ -0.08
NF1-217ENST00000498569 RNF39Q9H2S5 420 aa14.5□□□□□ -0.09
NF1-217ENST00000498569 C1QBPQ07021 282 aaKnown RBP14.33□□□□□ -0.12
NF1-217ENST00000498569 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
NF1-217ENST00000498569 NCBP3Q53F19 620 aaKnown RBP14.29□□□□□ -0.12
NF1-217ENST00000498569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.03□□□□□ -0.16
NF1-217ENST00000498569 NPM3O75607 178 aaKnown RBP13.97□□□□□ -0.17
NF1-217ENST00000498569 U3KPZ7 1027 aaPredicted RBP13.67□□□□□ -0.22
NF1-217ENST00000498569 CAPN15O75808 1086 aa13.57□□□□□ -0.24
NF1-217ENST00000498569 DSG3P32926 999 aa13.5□□□□□ -0.25
NF1-217ENST00000498569 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
NF1-217ENST00000498569 KCNA4P22459 653 aa13.49□□□□□ -0.25
NF1-217ENST00000498569 APLP2Q06481 763 aa13.44□□□□□ -0.26
NF1-217ENST00000498569 SLC4A2P04920 1241 aa13.36□□□□□ -0.27
NF1-217ENST00000498569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
NF1-217ENST00000498569 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
NF1-217ENST00000498569 ZNF219Q9P2Y4 722 aaPredicted RBP13.32□□□□□ -0.28
NF1-217ENST00000498569 TRHP20396 242 aaPredicted RBP13.27□□□□□ -0.29
NF1-217ENST00000498569 POTEHQ6S545 545 aa13.27□□□□□ -0.29
NF1-217ENST00000498569 SAMD1Q6SPF0 538 aaPredicted RBP13.22□□□□□ -0.29
NF1-217ENST00000498569 ABCB7O75027 752 aa13.18□□□□□ -0.3
NF1-217ENST00000498569 NISCHQ9Y2I1 1504 aa13.11□□□□□ -0.31
NF1-217ENST00000498569 MYCNP04198 464 aaPredicted RBP13.01□□□□□ -0.33
NF1-217ENST00000498569 RBM42Q9BTD8 480 aaKnown RBP13□□□□□ -0.33
NF1-217ENST00000498569 POLA2Q14181 598 aa12.85□□□□□ -0.35
NF1-217ENST00000498569 SLC4A1APQ9BWU0 796 aaKnown RBP12.75□□□□□ -0.37
NF1-217ENST00000498569 FOXD4L1Q9NU39 408 aa12.73□□□□□ -0.37
NF1-217ENST00000498569 CHRDL2Q6WN34 429 aa12.72□□□□□ -0.37
NF1-217ENST00000498569 ZBTB12Q9Y330 459 aaPredicted RBP12.71□□□□□ -0.37
NF1-217ENST00000498569 AKT1S1Q96B36 256 aa12.61□□□□□ -0.39
NF1-217ENST00000498569 ATF5Q9Y2D1 282 aaPredicted RBP12.58□□□□□ -0.4
NF1-217ENST00000498569 OSCARQ8IYS5 282 aa12.46□□□□□ -0.41
NF1-217ENST00000498569 REM2Q8IYK8 340 aaPredicted RBP12.44□□□□□ -0.42
NF1-217ENST00000498569 ATXN8OSP0DMR3 200 aa12.4□□□□□ -0.42
NF1-217ENST00000498569 ZBTB22O15209 634 aa12.35□□□□□ -0.43
NF1-217ENST00000498569 PIP4P2Q8N4L2 257 aa12.35□□□□□ -0.43
NF1-217ENST00000498569 SP7Q8TDD2 431 aaPredicted RBP12.35□□□□□ -0.43
NF1-217ENST00000498569 PITPNM1O00562 1244 aa12.31□□□□□ -0.44
NF1-217ENST00000498569 FBLN2P98095 1184 aa12.28□□□□□ -0.44
NF1-217ENST00000498569 SPDYE2BA6NHP3 402 aa12.24□□□□□ -0.45
NF1-217ENST00000498569 SPDYE6P0CI01 402 aa12.24□□□□□ -0.45
NF1-217ENST00000498569 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.45
NF1-217ENST00000498569 SPDYE2Q495Y8 402 aa12.24□□□□□ -0.45
NF1-217ENST00000498569 HAX1O00165 279 aa12.2□□□□□ -0.46
NF1-217ENST00000498569 ABCC9O60706 1549 aa12.11□□□□□ -0.47
NF1-217ENST00000498569 SPDYE1Q8NFV5 336 aaPredicted RBP12.09□□□□□ -0.47
NF1-217ENST00000498569 CLEC11AQ9Y240 323 aa12.03□□□□□ -0.48
NF1-217ENST00000498569 MKRN4PQ13434 485 aaPredicted RBP12.02□□□□□ -0.49
NF1-217ENST00000498569 ZNF692Q9BU19 519 aaPredicted RBP12.02□□□□□ -0.49
NF1-217ENST00000498569 SSUH2Q9Y2M2 353 aa12.01□□□□□ -0.49
NF1-217ENST00000498569 PRKAR2AP13861 404 aaKnown RBP12□□□□□ -0.49
NF1-217ENST00000498569 CCDC180Q9P1Z9 1646 aa12□□□□□ -0.49
NF1-217ENST00000498569 EVX2Q03828 476 aa11.91□□□□□ -0.5
NF1-217ENST00000498569 C19orf67A6NJJ6 358 aa11.87□□□□□ -0.51
NF1-217ENST00000498569 PABPN1Q86U42 306 aaKnown RBP eCLIP11.83□□□□□ -0.52
NF1-217ENST00000498569 PRR29P0C7W0 189 aa11.82□□□□□ -0.52
NF1-217ENST00000498569 CHADLQ6NUI6 762 aa11.76□□□□□ -0.53
NF1-217ENST00000498569 GABBR2O75899 941 aa11.72□□□□□ -0.53
NF1-217ENST00000498569 CD44P16070 742 aaKnown RBP11.63□□□□□ -0.55
NF1-217ENST00000498569 FARP1Q9Y4F1 1045 aaPredicted RBP11.63□□□□□ -0.55
NF1-217ENST00000498569 CSRNP3Q8WYN3 585 aa11.61□□□□□ -0.55
NF1-217ENST00000498569 CLCN6P51797 869 aa11.6□□□□□ -0.55
NF1-217ENST00000498569 LHX8Q68G74 356 aa11.57□□□□□ -0.56
NF1-217ENST00000498569 STAG3Q9UJ98 1225 aa11.54□□□□□ -0.56
NF1-217ENST00000498569 RB1CC1Q8TDY2 1594 aa11.48□□□□□ -0.57
NF1-217ENST00000498569 ZNF579Q8NAF0 562 aaKnown RBP11.44□□□□□ -0.58
NF1-217ENST00000498569 DCBLD2Q96PD2 775 aa11.43□□□□□ -0.58
NF1-217ENST00000498569 SPDYE4A6NLX3 237 aa11.42□□□□□ -0.58
NF1-217ENST00000498569 POTEIP0CG38 1075 aa11.42□□□□□ -0.58
NF1-217ENST00000498569 CREBZFQ9NS37 354 aa11.42□□□□□ -0.58
NF1-217ENST00000498569 ZRANB1Q9UGI0 708 aa11.42□□□□□ -0.58
NF1-217ENST00000498569 EHMT2Q96KQ7 1210 aa11.38□□□□□ -0.59
NF1-217ENST00000498569 PAK3O75914 559 aaPredicted RBP11.37□□□□□ -0.59
NF1-217ENST00000498569 UNC13AQ9UPW8 1703 aa11.32□□□□□ -0.6
NF1-217ENST00000498569 NPM1P06748 294 aaKnown RBP eCLIP11.31□□□□□ -0.6
NF1-217ENST00000498569 NACADO15069 1562 aa11.31□□□□□ -0.6
NF1-217ENST00000498569 GALR2O43603 387 aaPredicted RBP11.26□□□□□ -0.61
NF1-217ENST00000498569 PHF12Q96QT6 1004 aa11.21□□□□□ -0.61
NF1-217ENST00000498569 MNX1P50219 401 aaPredicted RBP11.17□□□□□ -0.62
NF1-217ENST00000498569 DCAF8L2P0C7V8 631 aa11.15□□□□□ -0.62
NF1-217ENST00000498569 BICRAQ9NZM4 1560 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms