RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	PELP1	Q8IZL8	1130 aa	Known RBP	14.36	□□□□□ -0.11
CRNKL1-205	ENST00000496549	MYT1	Q01538	1121 aa		14.16	□□□□□ -0.14
CRNKL1-205	ENST00000496549	NISCH	Q9Y2I1	1504 aa		13.73	□□□□□ -0.21
CRNKL1-205	ENST00000496549	HRC	P23327	699 aa		13.46	□□□□□ -0.26
CRNKL1-205	ENST00000496549	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.32	□□□□□ -0.28
CRNKL1-205	ENST00000496549	PCGF6	Q9BYE7	350 aa		13.13	□□□□□ -0.31
CRNKL1-205	ENST00000496549	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.01	□□□□□ -0.33
CRNKL1-205	ENST00000496549	CENPB	P07199	599 aa	Predicted RBP	12.96	□□□□□ -0.33
CRNKL1-205	ENST00000496549	ZEB1	P37275	1124 aa	Predicted RBP	12.93	□□□□□ -0.34
CRNKL1-205	ENST00000496549	SCAF1	Q9H7N4	1312 aa	Known RBP	12.87	□□□□□ -0.35
CRNKL1-205	ENST00000496549	ERICH6	Q7L0X2	663 aa		12.8	□□□□□ -0.36
CRNKL1-205	ENST00000496549	ACIN1	Q9UKV3	1341 aa	Known RBP	12.66	□□□□□ -0.38
CRNKL1-205	ENST00000496549	GTF3C3	Q9Y5Q9	886 aa		12.66	□□□□□ -0.38
CRNKL1-205	ENST00000496549	SUPT5H	O00267	1087 aa	Known RBP	12.62	□□□□□ -0.39
CRNKL1-205	ENST00000496549	BCL11A	Q9H165	835 aa		12.61	□□□□□ -0.39
CRNKL1-205	ENST00000496549	TRIM26	Q12899	539 aa	Predicted RBP	12.55	□□□□□ -0.4
CRNKL1-205	ENST00000496549	NEUROD1	Q13562	356 aa		12.44	□□□□□ -0.42
CRNKL1-205	ENST00000496549	PRKCSH	P14314	528 aa	Predicted RBP	12.39	□□□□□ -0.43
CRNKL1-205	ENST00000496549	YTHDC1	Q96MU7	727 aa	Known RBP	12.34	□□□□□ -0.43
CRNKL1-205	ENST00000496549	ANP32E	Q9BTT0	268 aa		12.33	□□□□□ -0.44
CRNKL1-205	ENST00000496549	DIEXF	Q68CQ4	756 aa	Known RBP	12.3	□□□□□ -0.44
CRNKL1-205	ENST00000496549	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.27	□□□□□ -0.45
CRNKL1-205	ENST00000496549	ABCC9	O60706	1549 aa		12.26	□□□□□ -0.45
CRNKL1-205	ENST00000496549	CCER1	Q8TC90	406 aa	Predicted RBP	12.24	□□□□□ -0.45
CRNKL1-205	ENST00000496549	SHROOM4	Q9ULL8	1493 aa		12.23	□□□□□ -0.45
CRNKL1-205	ENST00000496549	DCAF1	Q9Y4B6	1507 aa		12.2	□□□□□ -0.46
CRNKL1-205	ENST00000496549	CHIC1	Q5VXU3	224 aa		12.19	□□□□□ -0.46
CRNKL1-205	ENST00000496549	DCAF8L2	P0C7V8	631 aa		12.14	□□□□□ -0.47
CRNKL1-205	ENST00000496549	CLSPN	Q9HAW4	1339 aa		12.11	□□□□□ -0.47
CRNKL1-205	ENST00000496549	CCDC180	Q9P1Z9	1646 aa		12.04	□□□□□ -0.48
CRNKL1-205	ENST00000496549	CSRNP3	Q8WYN3	585 aa		12.04	□□□□□ -0.48
CRNKL1-205	ENST00000496549	MYT1L	Q9UL68	1186 aa		12.03	□□□□□ -0.48
CRNKL1-205	ENST00000496549	LOC105371045	A0A1W2PR82	267 aa		12.02	□□□□□ -0.49
CRNKL1-205	ENST00000496549	NEFL	P07196	543 aa		12	□□□□□ -0.49
CRNKL1-205	ENST00000496549	APLP2	Q06481	763 aa		12	□□□□□ -0.49
CRNKL1-205	ENST00000496549	MYO15B	Q96JP2	1530 aa		11.93	□□□□□ -0.5
CRNKL1-205	ENST00000496549	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.92	□□□□□ -0.5
CRNKL1-205	ENST00000496549	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.9	□□□□□ -0.51
CRNKL1-205	ENST00000496549	RTL5	Q5HYW3	569 aa	Predicted RBP	11.82	□□□□□ -0.52
CRNKL1-205	ENST00000496549	EIF5B	O60841	1220 aa	Known RBP	11.81	□□□□□ -0.52
CRNKL1-205	ENST00000496549	TSHZ2	Q9NRE2	1034 aa		11.81	□□□□□ -0.52
CRNKL1-205	ENST00000496549	SLC24A1	O60721	1099 aa		11.79	□□□□□ -0.52
CRNKL1-205	ENST00000496549	EHMT2	Q96KQ7	1210 aa		11.79	□□□□□ -0.52
CRNKL1-205	ENST00000496549	BCAN	Q96GW7	911 aa		11.78	□□□□□ -0.52
CRNKL1-205	ENST00000496549	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.77	□□□□□ -0.52
CRNKL1-205	ENST00000496549	GLIPR1L2	Q4G1C9	344 aa		11.74	□□□□□ -0.53
CRNKL1-205	ENST00000496549	ERICH6B	Q5W0A0	696 aa		11.71	□□□□□ -0.53
CRNKL1-205	ENST00000496549	MIER1	Q8N108	512 aa		11.71	□□□□□ -0.54
CRNKL1-205	ENST00000496549	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.67	□□□□□ -0.54
CRNKL1-205	ENST00000496549	DEK	P35659	375 aa	Known RBP	11.67	□□□□□ -0.54
CRNKL1-205	ENST00000496549	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.67	□□□□□ -0.54
CRNKL1-205	ENST00000496549	TRIM41	Q8WV44	630 aa		11.65	□□□□□ -0.54
CRNKL1-205	ENST00000496549	RBM19	Q9Y4C8	960 aa	Known RBP	11.62	□□□□□ -0.55
CRNKL1-205	ENST00000496549	FKBP8	Q14318	412 aa		11.62	□□□□□ -0.55
CRNKL1-205	ENST00000496549	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
CRNKL1-205	ENST00000496549	UBE2Q2	Q8WVN8	375 aa		11.58	□□□□□ -0.56
CRNKL1-205	ENST00000496549	CCDC136	Q96JN2	1154 aa		11.56	□□□□□ -0.56
CRNKL1-205	ENST00000496549	NBR1	Q14596	966 aa		11.54	□□□□□ -0.56
CRNKL1-205	ENST00000496549	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.52	□□□□□ -0.57
CRNKL1-205	ENST00000496549	PKNOX2	Q96KN3	472 aa		11.51	□□□□□ -0.57
CRNKL1-205	ENST00000496549	RTN4	Q9NQC3	1192 aa	Known RBP	11.5	□□□□□ -0.57
CRNKL1-205	ENST00000496549	SALL2	Q9Y467	1007 aa	Predicted RBP	11.49	□□□□□ -0.57
CRNKL1-205	ENST00000496549	DAXX	Q9UER7	740 aa	Predicted RBP	11.47	□□□□□ -0.57
CRNKL1-205	ENST00000496549	RB1CC1	Q8TDY2	1594 aa		11.47	□□□□□ -0.57
CRNKL1-205	ENST00000496549	ANP32A	P39687	249 aa	Known RBP	11.45	□□□□□ -0.58
CRNKL1-205	ENST00000496549	ITGAE	P38570	1179 aa		11.43	□□□□□ -0.58
CRNKL1-205	ENST00000496549	PODXL2	Q9NZ53	605 aa		11.43	□□□□□ -0.58
CRNKL1-205	ENST00000496549	FANCI	Q9NVI1	1328 aa		11.4	□□□□□ -0.58
CRNKL1-205	ENST00000496549	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.39	□□□□□ -0.59
CRNKL1-205	ENST00000496549	NACAD	O15069	1562 aa		11.38	□□□□□ -0.59
CRNKL1-205	ENST00000496549	NOP58	Q9Y2X3	529 aa	Known RBP	11.38	□□□□□ -0.59
CRNKL1-205	ENST00000496549	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.35	□□□□□ -0.59
CRNKL1-205	ENST00000496549	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.35	□□□□□ -0.59
CRNKL1-205	ENST00000496549	DNAJC5B	Q9UF47	199 aa		11.33	□□□□□ -0.6
CRNKL1-205	ENST00000496549	SCRIB	Q14160	1630 aa		11.31	□□□□□ -0.6
CRNKL1-205	ENST00000496549	NEFM	P07197	916 aa		11.27	□□□□□ -0.61
CRNKL1-205	ENST00000496549	RSPH6A	Q9H0K4	717 aa		11.27	□□□□□ -0.61
CRNKL1-205	ENST00000496549	VSIG10	Q8N0Z9	540 aa		11.25	□□□□□ -0.61
CRNKL1-205	ENST00000496549	MSH5	O43196	834 aa		11.24	□□□□□ -0.61
CRNKL1-205	ENST00000496549	ANP32C	O43423	234 aa		11.23	□□□□□ -0.61
CRNKL1-205	ENST00000496549	IL27	Q8NEV9	243 aa		11.22	□□□□□ -0.61
CRNKL1-205	ENST00000496549	TRIM52	Q96A61	297 aa		11.19	□□□□□ -0.62
CRNKL1-205	ENST00000496549	PPM1G	O15355	546 aa	Predicted RBP	11.18	□□□□□ -0.62
CRNKL1-205	ENST00000496549	UBTF	P17480	764 aa	Known RBP	11.16	□□□□□ -0.62
CRNKL1-205	ENST00000496549	UNC13A	Q9UPW8	1703 aa		11.15	□□□□□ -0.62
CRNKL1-205	ENST00000496549	PLEKHG5	O94827	1062 aa		11.15	□□□□□ -0.62
CRNKL1-205	ENST00000496549	NPM2	Q86SE8	214 aa	Known RBP	11.14	□□□□□ -0.63
CRNKL1-205	ENST00000496549	TIMELESS	Q9UNS1	1208 aa		11.14	□□□□□ -0.63
CRNKL1-205	ENST00000496549	PPP4R2	Q9NY27	417 aa		11.14	□□□□□ -0.63
CRNKL1-205	ENST00000496549	IRX6	P78412	446 aa	Predicted RBP	11.13	□□□□□ -0.63
CRNKL1-205	ENST00000496549	USP35	Q9P2H5	1018 aa		11.13	□□□□□ -0.63
CRNKL1-205	ENST00000496549	BICRA	Q9NZM4	1560 aa		11.12	□□□□□ -0.63
CRNKL1-205	ENST00000496549	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.1	□□□□□ -0.63
CRNKL1-205	ENST00000496549	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.1	□□□□□ -0.63
CRNKL1-205	ENST00000496549		A0A0U1RQG5	324 aa	Predicted RBP	11.09	□□□□□ -0.63
CRNKL1-205	ENST00000496549	IPO9	Q96P70	1041 aa	Known RBP	11.09	□□□□□ -0.63
CRNKL1-205	ENST00000496549	RANGAP1	P46060	587 aa	Predicted RBP	11.09	□□□□□ -0.63
CRNKL1-205	ENST00000496549	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.09	□□□□□ -0.63
CRNKL1-205	ENST00000496549	HSP90AA1	P07900	732 aa	Known RBP	11.09	□□□□□ -0.63
CRNKL1-205	ENST00000496549	DDX10	Q13206	875 aa	Known RBP	11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms