RNA–Protein interactions for RNA: ENST00000494841.1

RPGR-210, Transcript of retinitis pigmentosa GTPase regulator, humanhuman

TSL 1 (best)

Gene RPGR, Length 653 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPGR-210ENST00000494841 AEBP2Q6ZN18 517 aaPredicted RBP27.42■■□□□ 1.98
RPGR-210ENST00000494841 CHIC1Q5VXU3 224 aa26.88■■□□□ 1.89
RPGR-210ENST00000494841 PHF23Q9BUL5 403 aaPredicted RBP23.69■■□□□ 1.38
RPGR-210ENST00000494841 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
RPGR-210ENST00000494841 PLPPR3Q6T4P5 718 aa21.86■■□□□ 1.09
RPGR-210ENST00000494841 FOXD1Q16676 465 aa21.53■■□□□ 1.04
RPGR-210ENST00000494841 PPP6R1Q9UPN7 881 aa20.84■□□□□ 0.93
RPGR-210ENST00000494841 ADRA2BP18089 450 aa20.81■□□□□ 0.92
RPGR-210ENST00000494841 PIAS4Q8N2W9 510 aaPredicted RBP20.32■□□□□ 0.84
RPGR-210ENST00000494841 MSH5O43196 834 aa19.77■□□□□ 0.76
RPGR-210ENST00000494841 PPP4R3CPQ6ZMV5 832 aa19.29■□□□□ 0.68
RPGR-210ENST00000494841 KCNA4P22459 653 aa19.03■□□□□ 0.64
RPGR-210ENST00000494841 SCAF1Q9H7N4 1312 aaKnown RBP18.98■□□□□ 0.63
RPGR-210ENST00000494841 MAPK8IP2Q13387 824 aaPredicted RBP18.84■□□□□ 0.61
RPGR-210ENST00000494841 NCBP3Q53F19 620 aaKnown RBP18.79■□□□□ 0.6
RPGR-210ENST00000494841 CNKSR2Q8WXI2 1034 aa18.71■□□□□ 0.59
RPGR-210ENST00000494841 NPM3O75607 178 aaKnown RBP18.58■□□□□ 0.56
RPGR-210ENST00000494841 DMRT2Q9Y5R5 561 aa18.56■□□□□ 0.56
RPGR-210ENST00000494841 RNF216Q9NWF9 866 aaPredicted RBP18.32■□□□□ 0.52
RPGR-210ENST00000494841 HOXD11P31277 338 aaPredicted RBP18.23■□□□□ 0.51
RPGR-210ENST00000494841 SLC4A1APQ9BWU0 796 aaKnown RBP18.12■□□□□ 0.49
RPGR-210ENST00000494841 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
RPGR-210ENST00000494841 POTEDQ86YR6 584 aa17.78■□□□□ 0.44
RPGR-210ENST00000494841 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
RPGR-210ENST00000494841 DCAF8L1A6NGE4 600 aa17.69■□□□□ 0.42
RPGR-210ENST00000494841 NISCHQ9Y2I1 1504 aa17.62■□□□□ 0.41
RPGR-210ENST00000494841 ZBTB22O15209 634 aa17.56■□□□□ 0.4
RPGR-210ENST00000494841 SLC4A2P04920 1241 aa17.52■□□□□ 0.4
RPGR-210ENST00000494841 CSRNP3Q8WYN3 585 aa17.52■□□□□ 0.4
RPGR-210ENST00000494841 FOXD4L1Q9NU39 408 aa17.46■□□□□ 0.39
RPGR-210ENST00000494841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.33■□□□□ 0.36
RPGR-210ENST00000494841 MYCNP04198 464 aaPredicted RBP17.14■□□□□ 0.33
RPGR-210ENST00000494841 U3KPZ7 1027 aaPredicted RBP17.12■□□□□ 0.33
RPGR-210ENST00000494841 RNF39Q9H2S5 420 aa16.99■□□□□ 0.31
RPGR-210ENST00000494841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
RPGR-210ENST00000494841 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
RPGR-210ENST00000494841 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
RPGR-210ENST00000494841 ATXN8OSP0DMR3 200 aa16.82■□□□□ 0.28
RPGR-210ENST00000494841 C1QBPQ07021 282 aaKnown RBP16.76■□□□□ 0.27
RPGR-210ENST00000494841 ATF5Q9Y2D1 282 aaPredicted RBP16.7■□□□□ 0.26
RPGR-210ENST00000494841 APLP2Q06481 763 aa16.67■□□□□ 0.26
RPGR-210ENST00000494841 SPINK5Q9NQ38 1064 aaPredicted RBP16.59■□□□□ 0.25
RPGR-210ENST00000494841 CAPN15O75808 1086 aa16.48■□□□□ 0.23
RPGR-210ENST00000494841 ZNF219Q9P2Y4 722 aaPredicted RBP16.44■□□□□ 0.22
RPGR-210ENST00000494841 TRHP20396 242 aaPredicted RBP16.43■□□□□ 0.22
RPGR-210ENST00000494841 CACNB1Q02641 598 aaPredicted RBP16.39■□□□□ 0.21
RPGR-210ENST00000494841 POLA2Q14181 598 aa16.21■□□□□ 0.19
RPGR-210ENST00000494841 ABCB7O75027 752 aa16.2■□□□□ 0.18
RPGR-210ENST00000494841 DSG3P32926 999 aa16.2■□□□□ 0.18
RPGR-210ENST00000494841 MKRN4PQ13434 485 aaPredicted RBP16■□□□□ 0.15
RPGR-210ENST00000494841 ZBTB12Q9Y330 459 aaPredicted RBP15.95■□□□□ 0.14
RPGR-210ENST00000494841 FBLN2P98095 1184 aa15.93■□□□□ 0.14
RPGR-210ENST00000494841 FKBP8Q14318 412 aa15.81■□□□□ 0.12
RPGR-210ENST00000494841 OSCARQ8IYS5 282 aa15.69■□□□□ 0.1
RPGR-210ENST00000494841 SPDYE4A6NLX3 237 aa15.66■□□□□ 0.1
RPGR-210ENST00000494841 SPDYE2BA6NHP3 402 aa15.54■□□□□ 0.08
RPGR-210ENST00000494841 SPDYE6P0CI01 402 aa15.54■□□□□ 0.08
RPGR-210ENST00000494841 SPDYE2Q495Y8 402 aa15.54■□□□□ 0.08
RPGR-210ENST00000494841 CCDC180Q9P1Z9 1646 aa15.52■□□□□ 0.08
RPGR-210ENST00000494841 ZNF692Q9BU19 519 aaPredicted RBP15.48■□□□□ 0.07
RPGR-210ENST00000494841 PROM2Q8N271 834 aa15.47■□□□□ 0.07
RPGR-210ENST00000494841 SSUH2Q9Y2M2 353 aa15.47■□□□□ 0.07
RPGR-210ENST00000494841 RBM42Q9BTD8 480 aaKnown RBP15.4■□□□□ 0.06
RPGR-210ENST00000494841 PABPN1Q86U42 306 aaKnown RBP eCLIP15.3■□□□□ 0.04
RPGR-210ENST00000494841 AKT1S1Q96B36 256 aa15.25■□□□□ 0.03
RPGR-210ENST00000494841 FBXO3Q9UK99 471 aa15.18■□□□□ 0.02
RPGR-210ENST00000494841 REM2Q8IYK8 340 aaPredicted RBP15.12■□□□□ 0.01
RPGR-210ENST00000494841 ABCC9O60706 1549 aa15.1■□□□□ 0.01
RPGR-210ENST00000494841 STAG3Q9UJ98 1225 aa15.04■□□□□ -0
RPGR-210ENST00000494841 SPDYE1Q8NFV5 336 aaPredicted RBP15.03■□□□□ -0
RPGR-210ENST00000494841 VASPP50552 380 aaPredicted RBP15.02■□□□□ -0
RPGR-210ENST00000494841 PITPNM1O00562 1244 aa14.97□□□□□ -0.01
RPGR-210ENST00000494841 CLEC11AQ9Y240 323 aa14.94□□□□□ -0.02
RPGR-210ENST00000494841 PRR29P0C7W0 189 aa14.83□□□□□ -0.04
RPGR-210ENST00000494841 IFNLR1Q8IU57 520 aaPredicted RBP14.83□□□□□ -0.04
RPGR-210ENST00000494841 MIER1Q8N108 512 aa14.8□□□□□ -0.04
RPGR-210ENST00000494841 PLCD3Q8N3E9 789 aa14.8□□□□□ -0.04
RPGR-210ENST00000494841 DCAF8L2P0C7V8 631 aa14.79□□□□□ -0.04
RPGR-210ENST00000494841 CHRDL2Q6WN34 429 aa14.73□□□□□ -0.05
RPGR-210ENST00000494841 CREBZFQ9NS37 354 aa14.73□□□□□ -0.05
RPGR-210ENST00000494841 ZCCHC6Q5VYS8 1495 aaKnown RBP14.69□□□□□ -0.06
RPGR-210ENST00000494841 PLEKHG5O94827 1062 aa14.68□□□□□ -0.06
RPGR-210ENST00000494841 KLHL34Q8N239 644 aa14.67□□□□□ -0.06
RPGR-210ENST00000494841 AMER1Q5JTC6 1135 aaPredicted RBP14.65□□□□□ -0.06
RPGR-210ENST00000494841 RTN4Q9NQC3 1192 aaKnown RBP14.65□□□□□ -0.06
RPGR-210ENST00000494841 FXR2P51116 673 aaKnown RBP eCLIP14.64□□□□□ -0.07
RPGR-210ENST00000494841 ZBTB47Q9UFB7 747 aaPredicted RBP14.62□□□□□ -0.07
RPGR-210ENST00000494841 MNX1P50219 401 aaPredicted RBP14.61□□□□□ -0.07
RPGR-210ENST00000494841 CHADLQ6NUI6 762 aa14.6□□□□□ -0.07
RPGR-210ENST00000494841 SPOCK2Q92563 424 aa14.6□□□□□ -0.07
RPGR-210ENST00000494841 PIP4P2Q8N4L2 257 aa14.59□□□□□ -0.07
RPGR-210ENST00000494841 PRKAR2AP13861 404 aaKnown RBP14.56□□□□□ -0.08
RPGR-210ENST00000494841 NACADO15069 1562 aa14.56□□□□□ -0.08
RPGR-210ENST00000494841 RB1CC1Q8TDY2 1594 aa14.54□□□□□ -0.08
RPGR-210ENST00000494841 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.08
RPGR-210ENST00000494841 MYO15BQ96JP2 1530 aa14.49□□□□□ -0.09
RPGR-210ENST00000494841 FARP1Q9Y4F1 1045 aaPredicted RBP14.48□□□□□ -0.09
RPGR-210ENST00000494841 NUBP1P53384 320 aa14.47□□□□□ -0.09
RPGR-210ENST00000494841 NPM1P06748 294 aaKnown RBP eCLIP14.42□□□□□ -0.1
RPGR-210ENST00000494841 PKD2Q13563 968 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms