RNA–Protein interactions for RNA: ENST00000485607.1

CLRN1-206, Transcript of clarin 1, humanhuman

TSL 1 (best)

Gene CLRN1, Length 704 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1-206ENST00000485607 AEBP2Q6ZN18 517 aaPredicted RBP29.35■■■□□ 2.29
CLRN1-206ENST00000485607 CHIC1Q5VXU3 224 aa27.73■■■□□ 2.03
CLRN1-206ENST00000485607 SENP3Q9H4L4 574 aaPredicted RBP25.13■■□□□ 1.61
CLRN1-206ENST00000485607 PHF23Q9BUL5 403 aaPredicted RBP24.8■■□□□ 1.56
CLRN1-206ENST00000485607 FOXD1Q16676 465 aa23.41■■□□□ 1.34
CLRN1-206ENST00000485607 PLPPR3Q6T4P5 718 aa22.13■■□□□ 1.13
CLRN1-206ENST00000485607 MSH5O43196 834 aa22.02■■□□□ 1.12
CLRN1-206ENST00000485607 PIAS4Q8N2W9 510 aaPredicted RBP21.91■■□□□ 1.1
CLRN1-206ENST00000485607 POTEDQ86YR6 584 aa21.76■■□□□ 1.07
CLRN1-206ENST00000485607 PPP6R1Q9UPN7 881 aa21.76■■□□□ 1.07
CLRN1-206ENST00000485607 ADRA2BP18089 450 aa21.73■■□□□ 1.07
CLRN1-206ENST00000485607 MAPK8IP2Q13387 824 aaPredicted RBP20.02■□□□□ 0.8
CLRN1-206ENST00000485607 SCAF1Q9H7N4 1312 aaKnown RBP19.94■□□□□ 0.78
CLRN1-206ENST00000485607 DMRT2Q9Y5R5 561 aa19.86■□□□□ 0.77
CLRN1-206ENST00000485607 PPP4R3CPQ6ZMV5 832 aa19.38■□□□□ 0.69
CLRN1-206ENST00000485607 DCAF8L1A6NGE4 600 aa19.28■□□□□ 0.68
CLRN1-206ENST00000485607 CACNB1Q02641 598 aaPredicted RBP19.09■□□□□ 0.65
CLRN1-206ENST00000485607 CNKSR2Q8WXI2 1034 aa19.05■□□□□ 0.64
CLRN1-206ENST00000485607 HOXD11P31277 338 aaPredicted RBP19.03■□□□□ 0.64
CLRN1-206ENST00000485607 RNF216Q9NWF9 866 aaPredicted RBP18.89■□□□□ 0.61
CLRN1-206ENST00000485607 RNF39Q9H2S5 420 aa18.72■□□□□ 0.59
CLRN1-206ENST00000485607 NCBP3Q53F19 620 aaKnown RBP18.64■□□□□ 0.57
CLRN1-206ENST00000485607 NISCHQ9Y2I1 1504 aa18.58■□□□□ 0.56
CLRN1-206ENST00000485607 C1QBPQ07021 282 aaKnown RBP18.47■□□□□ 0.55
CLRN1-206ENST00000485607 DNAJC5BQ9UF47 199 aa18.35■□□□□ 0.53
CLRN1-206ENST00000485607 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.31■□□□□ 0.52
CLRN1-206ENST00000485607 NPM3O75607 178 aaKnown RBP18.28■□□□□ 0.52
CLRN1-206ENST00000485607 KCNA4P22459 653 aa17.8■□□□□ 0.44
CLRN1-206ENST00000485607 U3KPZ7 1027 aaPredicted RBP17.78■□□□□ 0.44
CLRN1-206ENST00000485607 CAPN15O75808 1086 aa17.69■□□□□ 0.42
CLRN1-206ENST00000485607 SPINK5Q9NQ38 1064 aaPredicted RBP17.61■□□□□ 0.41
CLRN1-206ENST00000485607 DSG3P32926 999 aa17.49■□□□□ 0.39
CLRN1-206ENST00000485607 SLC4A2P04920 1241 aa17.47■□□□□ 0.39
CLRN1-206ENST00000485607 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
CLRN1-206ENST00000485607 APLP2Q06481 763 aa17.36■□□□□ 0.37
CLRN1-206ENST00000485607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.29■□□□□ 0.36
CLRN1-206ENST00000485607 HNRNPUL2Q1KMD3 747 aaKnown RBP17.29■□□□□ 0.36
CLRN1-206ENST00000485607 ZNF219Q9P2Y4 722 aaPredicted RBP17.25■□□□□ 0.35
CLRN1-206ENST00000485607 ABCB7O75027 752 aa17.24■□□□□ 0.35
CLRN1-206ENST00000485607 SAMD1Q6SPF0 538 aaPredicted RBP17.17■□□□□ 0.34
CLRN1-206ENST00000485607 POTEHQ6S545 545 aa17.05■□□□□ 0.32
CLRN1-206ENST00000485607 MYCNP04198 464 aaPredicted RBP16.94■□□□□ 0.3
CLRN1-206ENST00000485607 SLC4A1APQ9BWU0 796 aaKnown RBP16.82■□□□□ 0.28
CLRN1-206ENST00000485607 POLA2Q14181 598 aa16.81■□□□□ 0.28
CLRN1-206ENST00000485607 RBM42Q9BTD8 480 aaKnown RBP16.75■□□□□ 0.27
CLRN1-206ENST00000485607 FOXD4L1Q9NU39 408 aa16.67■□□□□ 0.26
CLRN1-206ENST00000485607 ABCC9O60706 1549 aa16.65■□□□□ 0.26
CLRN1-206ENST00000485607 CCDC180Q9P1Z9 1646 aa16.62■□□□□ 0.25
CLRN1-206ENST00000485607 ATF5Q9Y2D1 282 aaPredicted RBP16.54■□□□□ 0.24
CLRN1-206ENST00000485607 CHRDL2Q6WN34 429 aa16.44■□□□□ 0.22
CLRN1-206ENST00000485607 ZBTB12Q9Y330 459 aaPredicted RBP16.43■□□□□ 0.22
CLRN1-206ENST00000485607 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
CLRN1-206ENST00000485607 ZBTB22O15209 634 aa16.3■□□□□ 0.2
CLRN1-206ENST00000485607 OSCARQ8IYS5 282 aa16.25■□□□□ 0.19
CLRN1-206ENST00000485607 REM2Q8IYK8 340 aaPredicted RBP16.16■□□□□ 0.18
CLRN1-206ENST00000485607 ATXN8OSP0DMR3 200 aa16.14■□□□□ 0.17
CLRN1-206ENST00000485607 FBLN2P98095 1184 aa16.01■□□□□ 0.15
CLRN1-206ENST00000485607 PIP4P2Q8N4L2 257 aa16■□□□□ 0.15
CLRN1-206ENST00000485607 PITPNM1O00562 1244 aa15.98■□□□□ 0.15
CLRN1-206ENST00000485607 SPDYE2BA6NHP3 402 aa15.89■□□□□ 0.13
CLRN1-206ENST00000485607 SPDYE6P0CI01 402 aa15.89■□□□□ 0.13
CLRN1-206ENST00000485607 SPDYE2Q495Y8 402 aa15.89■□□□□ 0.13
CLRN1-206ENST00000485607 SP7Q8TDD2 431 aaPredicted RBP15.89■□□□□ 0.13
CLRN1-206ENST00000485607 HAX1O00165 279 aa15.87■□□□□ 0.13
CLRN1-206ENST00000485607 FXR2P51116 673 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLRN1-206ENST00000485607 RB1CC1Q8TDY2 1594 aa15.8■□□□□ 0.12
CLRN1-206ENST00000485607 CLEC11AQ9Y240 323 aa15.77■□□□□ 0.12
CLRN1-206ENST00000485607 ZNF692Q9BU19 519 aaPredicted RBP15.75■□□□□ 0.11
CLRN1-206ENST00000485607 MKRN4PQ13434 485 aaPredicted RBP15.73■□□□□ 0.11
CLRN1-206ENST00000485607 NACADO15069 1562 aa15.7■□□□□ 0.1
CLRN1-206ENST00000485607 SPDYE1Q8NFV5 336 aaPredicted RBP15.69■□□□□ 0.1
CLRN1-206ENST00000485607 DCAF8L2P0C7V8 631 aa15.65■□□□□ 0.1
CLRN1-206ENST00000485607 PRKAR2AP13861 404 aaKnown RBP15.62■□□□□ 0.09
CLRN1-206ENST00000485607 SSUH2Q9Y2M2 353 aa15.59■□□□□ 0.09
CLRN1-206ENST00000485607 EVX2Q03828 476 aa15.53■□□□□ 0.08
CLRN1-206ENST00000485607 PABPN1Q86U42 306 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLRN1-206ENST00000485607 MYO15BQ96JP2 1530 aa15.49■□□□□ 0.07
CLRN1-206ENST00000485607 UNC13AQ9UPW8 1703 aa15.46■□□□□ 0.06
CLRN1-206ENST00000485607 PRR29P0C7W0 189 aa15.44■□□□□ 0.06
CLRN1-206ENST00000485607 CSRNP3Q8WYN3 585 aa15.44■□□□□ 0.06
CLRN1-206ENST00000485607 ZCCHC6Q5VYS8 1495 aaKnown RBP15.42■□□□□ 0.06
CLRN1-206ENST00000485607 CHADLQ6NUI6 762 aa15.42■□□□□ 0.06
CLRN1-206ENST00000485607 BICRAQ9NZM4 1560 aa15.41■□□□□ 0.06
CLRN1-206ENST00000485607 C19orf67A6NJJ6 358 aa15.34■□□□□ 0.05
CLRN1-206ENST00000485607 DCAF1Q9Y4B6 1507 aa15.32■□□□□ 0.04
CLRN1-206ENST00000485607 EHMT2Q96KQ7 1210 aa15.28■□□□□ 0.04
CLRN1-206ENST00000485607 GABBR2O75899 941 aa15.21■□□□□ 0.03
CLRN1-206ENST00000485607 SCRIBQ14160 1630 aa15.21■□□□□ 0.02
CLRN1-206ENST00000485607 FARP1Q9Y4F1 1045 aaPredicted RBP15.13■□□□□ 0.01
CLRN1-206ENST00000485607 SHROOM4Q9ULL8 1493 aa15.13■□□□□ 0.01
CLRN1-206ENST00000485607 CD44P16070 742 aaKnown RBP15.11■□□□□ 0.01
CLRN1-206ENST00000485607 STAG3Q9UJ98 1225 aa15.02■□□□□ -0
CLRN1-206ENST00000485607 CC2D2AQ9P2K1 1620 aa15.02□□□□□ -0.01
CLRN1-206ENST00000485607 SPDYE4A6NLX3 237 aa15.01□□□□□ -0.01
CLRN1-206ENST00000485607 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
CLRN1-206ENST00000485607 CECR2Q9BXF3 1484 aa14.97□□□□□ -0.01
CLRN1-206ENST00000485607 LHX8Q68G74 356 aa14.95□□□□□ -0.02
CLRN1-206ENST00000485607 CREBZFQ9NS37 354 aa14.91□□□□□ -0.02
CLRN1-206ENST00000485607 ZRANB1Q9UGI0 708 aa14.9□□□□□ -0.02
CLRN1-206ENST00000485607 CLCN6P51797 869 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms