RNA–Protein interactions for RNA: ENST00000482470.5

CALD1-220, Transcript of caldesmon 1, humanhuman

TSL 2

Gene CALD1, Length 3,941 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-220ENST00000482470 NISCHQ9Y2I1 1504 aa17.68■□□□□ 0.42
CALD1-220ENST00000482470 DCAF8L2P0C7V8 631 aa16.28■□□□□ 0.2
CALD1-220ENST00000482470 SHROOM4Q9ULL8 1493 aa16.1■□□□□ 0.17
CALD1-220ENST00000482470 SUPT5HO00267 1087 aaKnown RBP15.97■□□□□ 0.15
CALD1-220ENST00000482470 EHMT2Q96KQ7 1210 aa15.1■□□□□ 0.01
CALD1-220ENST00000482470 FAM9AQ8IZU1 332 aaPredicted RBP14.92□□□□□ -0.02
CALD1-220ENST00000482470 CHIC1Q5VXU3 224 aa14.92□□□□□ -0.02
CALD1-220ENST00000482470 PCGF6Q9BYE7 350 aa14.91□□□□□ -0.02
CALD1-220ENST00000482470 ZCCHC6Q5VYS8 1495 aaKnown RBP14.79□□□□□ -0.04
CALD1-220ENST00000482470 LOC105371045A0A1W2PR82 267 aa14.78□□□□□ -0.04
CALD1-220ENST00000482470 TRIM41Q8WV44 630 aa14.71□□□□□ -0.05
CALD1-220ENST00000482470 ABCC9O60706 1549 aa14.58□□□□□ -0.07
CALD1-220ENST00000482470 CCDC180Q9P1Z9 1646 aa14.58□□□□□ -0.08
CALD1-220ENST00000482470 TTBK1Q5TCY1 1321 aaPredicted RBP14.54□□□□□ -0.08
CALD1-220ENST00000482470 PPARGC1BQ86YN6 1023 aaKnown RBP14.5□□□□□ -0.09
CALD1-220ENST00000482470 HRCP23327 699 aa14.45□□□□□ -0.1
CALD1-220ENST00000482470 MYO15BQ96JP2 1530 aa14.41□□□□□ -0.1
CALD1-220ENST00000482470 SCRIBQ14160 1630 aa14.34□□□□□ -0.11
CALD1-220ENST00000482470 TRIM26Q12899 539 aaPredicted RBP14.33□□□□□ -0.12
CALD1-220ENST00000482470 RANGAP1P46060 587 aaPredicted RBP14.32□□□□□ -0.12
CALD1-220ENST00000482470 PABPN1Q86U42 306 aaKnown RBP eCLIP14.29□□□□□ -0.12
CALD1-220ENST00000482470 UBTFP17480 764 aaKnown RBP14.24□□□□□ -0.13
CALD1-220ENST00000482470 CCER1Q8TC90 406 aaPredicted RBP14.15□□□□□ -0.14
CALD1-220ENST00000482470 RSF1Q96T23 1441 aaPredicted RBP14.15□□□□□ -0.14
CALD1-220ENST00000482470 DCAF1Q9Y4B6 1507 aa14.1□□□□□ -0.15
CALD1-220ENST00000482470 APLP2Q06481 763 aa14.09□□□□□ -0.15
CALD1-220ENST00000482470 ZEB1P37275 1124 aaPredicted RBP14.07□□□□□ -0.16
CALD1-220ENST00000482470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.02□□□□□ -0.17
CALD1-220ENST00000482470 CECR2Q9BXF3 1484 aa14.01□□□□□ -0.17
CALD1-220ENST00000482470 PELP1Q8IZL8 1130 aaKnown RBP13.92□□□□□ -0.18
CALD1-220ENST00000482470 HNRNPUL2Q1KMD3 747 aaKnown RBP13.89□□□□□ -0.19
CALD1-220ENST00000482470 RB1CC1Q8TDY2 1594 aa13.86□□□□□ -0.19
CALD1-220ENST00000482470 NACADO15069 1562 aa13.85□□□□□ -0.19
CALD1-220ENST00000482470 ATP1B4Q9UN42 357 aaPredicted RBP13.84□□□□□ -0.19
CALD1-220ENST00000482470 MROH2BQ7Z745 1585 aa13.83□□□□□ -0.2
CALD1-220ENST00000482470 CSRNP3Q8WYN3 585 aa13.82□□□□□ -0.2
CALD1-220ENST00000482470 ITGAEP38570 1179 aa13.75□□□□□ -0.21
CALD1-220ENST00000482470 YTHDC1Q96MU7 727 aaKnown RBP13.73□□□□□ -0.21
CALD1-220ENST00000482470 WIZO95785 1651 aa13.67□□□□□ -0.22
CALD1-220ENST00000482470 BAZ1AQ9NRL2 1556 aaPredicted RBP13.63□□□□□ -0.23
CALD1-220ENST00000482470 DIEXFQ68CQ4 756 aaKnown RBP13.62□□□□□ -0.23
CALD1-220ENST00000482470 CENPBP07199 599 aaPredicted RBP13.61□□□□□ -0.23
CALD1-220ENST00000482470 SOGA1O94964 1423 aa13.59□□□□□ -0.23
CALD1-220ENST00000482470 ABCC8Q09428 1581 aa13.59□□□□□ -0.23
CALD1-220ENST00000482470 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
CALD1-220ENST00000482470 CEP162Q5TB80 1403 aa13.54□□□□□ -0.24
CALD1-220ENST00000482470 WRNQ14191 1432 aaPredicted RBP eCLIP13.51□□□□□ -0.25
CALD1-220ENST00000482470 P3H3Q8IVL6 736 aa13.5□□□□□ -0.25
CALD1-220ENST00000482470 SCAF1Q9H7N4 1312 aaKnown RBP13.47□□□□□ -0.25
CALD1-220ENST00000482470 MYT1Q01538 1121 aa13.44□□□□□ -0.26
CALD1-220ENST00000482470 BAZ1BQ9UIG0 1483 aaKnown RBP13.43□□□□□ -0.26
CALD1-220ENST00000482470 TNIKQ9UKE5 1360 aa13.43□□□□□ -0.26
CALD1-220ENST00000482470 FAM50AQ14320 339 aaKnown RBP13.43□□□□□ -0.26
CALD1-220ENST00000482470 RUSC2Q8N2Y8 1516 aa13.42□□□□□ -0.26
CALD1-220ENST00000482470 CLIP1P30622 1438 aa13.42□□□□□ -0.26
CALD1-220ENST00000482470 ZNF316A6NFI3 1004 aaPredicted RBP13.41□□□□□ -0.26
CALD1-220ENST00000482470 TOP2AP11388 1531 aaKnown RBP13.39□□□□□ -0.27
CALD1-220ENST00000482470 GOLGA3Q08378 1498 aa13.39□□□□□ -0.27
CALD1-220ENST00000482470 SMARCA4P51532 1647 aa13.37□□□□□ -0.27
CALD1-220ENST00000482470 EEA1Q15075 1411 aa13.36□□□□□ -0.27
CALD1-220ENST00000482470 GTF3C3Q9Y5Q9 886 aa13.35□□□□□ -0.27
CALD1-220ENST00000482470 NEUROD1Q13562 356 aa13.34□□□□□ -0.27
CALD1-220ENST00000482470 ACIN1Q9UKV3 1341 aaKnown RBP13.3□□□□□ -0.28
CALD1-220ENST00000482470 ARID3CA6NKF2 412 aa13.29□□□□□ -0.28
CALD1-220ENST00000482470 CEP164Q9UPV0 1460 aa13.29□□□□□ -0.28
CALD1-220ENST00000482470 SMARCA2P51531 1590 aa13.29□□□□□ -0.28
CALD1-220ENST00000482470 ATAD2BQ9ULI0 1458 aa13.26□□□□□ -0.29
CALD1-220ENST00000482470 MIER1Q8N108 512 aa13.22□□□□□ -0.29
CALD1-220ENST00000482470 KANK4Q5T7N3 995 aaPredicted RBP13.21□□□□□ -0.29
CALD1-220ENST00000482470 RAPGEF2Q9Y4G8 1499 aa13.19□□□□□ -0.3
CALD1-220ENST00000482470 KIF27Q86VH2 1401 aa13.18□□□□□ -0.3
CALD1-220ENST00000482470 CNGB1Q14028 1251 aaPredicted RBP13.17□□□□□ -0.3
CALD1-220ENST00000482470 VPS8Q8N3P4 1428 aa13.14□□□□□ -0.31
CALD1-220ENST00000482470 TRIM52Q96A61 297 aa13.13□□□□□ -0.31
CALD1-220ENST00000482470 FBLN2P98095 1184 aa13.11□□□□□ -0.31
CALD1-220ENST00000482470 HIRIP3Q9BW71 556 aaPredicted RBP13.11□□□□□ -0.31
CALD1-220ENST00000482470 POLR3GLQ9BT43 218 aa13.09□□□□□ -0.31
CALD1-220ENST00000482470 CUX2O14529 1486 aa13.09□□□□□ -0.31
CALD1-220ENST00000482470 CHIC2Q9UKJ5 165 aa13.06□□□□□ -0.32
CALD1-220ENST00000482470 DDX10Q13206 875 aaKnown RBP13.05□□□□□ -0.32
CALD1-220ENST00000482470 CARMIL1Q5VZK9 1371 aa13.05□□□□□ -0.32
CALD1-220ENST00000482470 BICRAQ9NZM4 1560 aa13.05□□□□□ -0.32
CALD1-220ENST00000482470 SYNJ1O43426 1573 aa13.05□□□□□ -0.32
CALD1-220ENST00000482470 BCANQ96GW7 911 aa13.03□□□□□ -0.32
CALD1-220ENST00000482470 SIN3AQ96ST3 1273 aa13.03□□□□□ -0.32
CALD1-220ENST00000482470 NEFLP07196 543 aa13.02□□□□□ -0.33
CALD1-220ENST00000482470 CCNB3Q8WWL7 1395 aa12.99□□□□□ -0.33
CALD1-220ENST00000482470 MTUS2Q5JR59 1369 aa12.98□□□□□ -0.33
CALD1-220ENST00000482470 CADPSQ9ULU8 1353 aa12.97□□□□□ -0.33
CALD1-220ENST00000482470 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.33
CALD1-220ENST00000482470 ZNF326Q5BKZ1 582 aaKnown RBP12.96□□□□□ -0.34
CALD1-220ENST00000482470 ZNF777Q9ULD5 760 aaPredicted RBP12.96□□□□□ -0.34
CALD1-220ENST00000482470 RRP7BPQ9NSQ0 103 aa12.95□□□□□ -0.34
CALD1-220ENST00000482470 ANP32CO43423 234 aa12.94□□□□□ -0.34
CALD1-220ENST00000482470 TDRD9Q8NDG6 1382 aaKnown RBP12.94□□□□□ -0.34
CALD1-220ENST00000482470 NCAPD3P42695 1498 aa12.91□□□□□ -0.34
CALD1-220ENST00000482470 TONSLQ96HA7 1378 aa12.91□□□□□ -0.34
CALD1-220ENST00000482470 BCL11AQ9H165 835 aa12.91□□□□□ -0.34
CALD1-220ENST00000482470 EIF4G1Q04637 1599 aaKnown RBP12.91□□□□□ -0.34
CALD1-220ENST00000482470 KIF21BO75037 1637 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms