RNA–Protein interactions for RNA: ENST00000480321.1

MCF2L-225, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 5,727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-225ENST00000480321 DCAF8L2P0C7V8 631 aa23.43■■□□□ 1.34
MCF2L-225ENST00000480321 NISCHQ9Y2I1 1504 aa22.3■■□□□ 1.16
MCF2L-225ENST00000480321 SUPT5HO00267 1087 aaKnown RBP22.06■■□□□ 1.12
MCF2L-225ENST00000480321 PELP1Q8IZL8 1130 aaKnown RBP21.72■■□□□ 1.07
MCF2L-225ENST00000480321 SHROOM4Q9ULL8 1493 aa21.61■■□□□ 1.05
MCF2L-225ENST00000480321 EHMT2Q96KQ7 1210 aa21.53■■□□□ 1.04
MCF2L-225ENST00000480321 APLP2Q06481 763 aa21.21■□□□□ 0.99
MCF2L-225ENST00000480321 ZEB1P37275 1124 aaPredicted RBP21.03■□□□□ 0.96
MCF2L-225ENST00000480321 FAM9AQ8IZU1 332 aaPredicted RBP20.99■□□□□ 0.95
MCF2L-225ENST00000480321 CENPBP07199 599 aaPredicted RBP20.91■□□□□ 0.94
MCF2L-225ENST00000480321 PCGF6Q9BYE7 350 aa20.88■□□□□ 0.93
MCF2L-225ENST00000480321 TTBK1Q5TCY1 1321 aaPredicted RBP20.8■□□□□ 0.92
MCF2L-225ENST00000480321 ERICH6Q7L0X2 663 aa20.76■□□□□ 0.91
MCF2L-225ENST00000480321 CCER1Q8TC90 406 aaPredicted RBP20.71■□□□□ 0.91
MCF2L-225ENST00000480321 MYT1Q01538 1121 aa20.71■□□□□ 0.91
MCF2L-225ENST00000480321 RANGAP1P46060 587 aaPredicted RBP20.63■□□□□ 0.89
MCF2L-225ENST00000480321 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
MCF2L-225ENST00000480321 ATP1B4Q9UN42 357 aaPredicted RBP20.52■□□□□ 0.88
MCF2L-225ENST00000480321 NEFLP07196 543 aa20.34■□□□□ 0.85
MCF2L-225ENST00000480321 UBTFP17480 764 aaKnown RBP20.29■□□□□ 0.84
MCF2L-225ENST00000480321 TRIM26Q12899 539 aaPredicted RBP20.22■□□□□ 0.83
MCF2L-225ENST00000480321 YTHDC1Q96MU7 727 aaKnown RBP20.12■□□□□ 0.81
MCF2L-225ENST00000480321 HRCP23327 699 aa20.11■□□□□ 0.81
MCF2L-225ENST00000480321 PPARGC1BQ86YN6 1023 aaKnown RBP19.86■□□□□ 0.77
MCF2L-225ENST00000480321 MYT1LQ9UL68 1186 aa19.86■□□□□ 0.77
MCF2L-225ENST00000480321 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.8■□□□□ 0.76
MCF2L-225ENST00000480321 HNRNPUL2Q1KMD3 747 aaKnown RBP19.8■□□□□ 0.76
MCF2L-225ENST00000480321 CHIC1Q5VXU3 224 aa19.77■□□□□ 0.76
MCF2L-225ENST00000480321 ITGAEP38570 1179 aa19.71■□□□□ 0.75
MCF2L-225ENST00000480321 DAXXQ9UER7 740 aaPredicted RBP19.7■□□□□ 0.74
MCF2L-225ENST00000480321 POLR3GLQ9BT43 218 aa19.68■□□□□ 0.74
MCF2L-225ENST00000480321 LOC105371045A0A1W2PR82 267 aa19.57■□□□□ 0.72
MCF2L-225ENST00000480321 DIEXFQ68CQ4 756 aaKnown RBP19.49■□□□□ 0.71
MCF2L-225ENST00000480321 CNGB1Q14028 1251 aaPredicted RBP19.46■□□□□ 0.71
MCF2L-225ENST00000480321 SLC4A1APQ9BWU0 796 aaKnown RBP19.4■□□□□ 0.7
MCF2L-225ENST00000480321 RTL5Q5HYW3 569 aaPredicted RBP19.36■□□□□ 0.69
MCF2L-225ENST00000480321 ZNF316A6NFI3 1004 aaPredicted RBP19.24■□□□□ 0.67
MCF2L-225ENST00000480321 FAM50AQ14320 339 aaKnown RBP19.18■□□□□ 0.66
MCF2L-225ENST00000480321 TRIM52Q96A61 297 aa19.13■□□□□ 0.65
MCF2L-225ENST00000480321 CLSPNQ9HAW4 1339 aa19.11■□□□□ 0.65
MCF2L-225ENST00000480321 GTF3C3Q9Y5Q9 886 aa19.11■□□□□ 0.65
MCF2L-225ENST00000480321 ANP32CO43423 234 aa19.1■□□□□ 0.65
MCF2L-225ENST00000480321 PABPN1Q86U42 306 aaKnown RBP eCLIP19.09■□□□□ 0.65
MCF2L-225ENST00000480321 CDK11AQ9UQ88 783 aaPredicted RBP19.07■□□□□ 0.64
MCF2L-225ENST00000480321 ABCC9O60706 1549 aa19.01■□□□□ 0.63
MCF2L-225ENST00000480321 NEUROD1Q13562 356 aa18.98■□□□□ 0.63
MCF2L-225ENST00000480321 ACIN1Q9UKV3 1341 aaKnown RBP18.97■□□□□ 0.63
MCF2L-225ENST00000480321 FBLN2P98095 1184 aa18.95■□□□□ 0.62
MCF2L-225ENST00000480321 BCANQ96GW7 911 aa18.94■□□□□ 0.62
MCF2L-225ENST00000480321 ZNF326Q5BKZ1 582 aaKnown RBP18.93■□□□□ 0.62
MCF2L-225ENST00000480321 SLC24A1O60721 1099 aa18.85■□□□□ 0.61
MCF2L-225ENST00000480321 DCAF1Q9Y4B6 1507 aa18.85■□□□□ 0.61
MCF2L-225ENST00000480321 ZBTB47Q9UFB7 747 aaPredicted RBP18.81■□□□□ 0.6
MCF2L-225ENST00000480321 BCL11AQ9H165 835 aa18.79■□□□□ 0.6
MCF2L-225ENST00000480321 CSRNP3Q8WYN3 585 aa18.78■□□□□ 0.6
MCF2L-225ENST00000480321 ANP32AP39687 249 aaKnown RBP18.77■□□□□ 0.59
MCF2L-225ENST00000480321 ARID3CA6NKF2 412 aa18.7■□□□□ 0.58
MCF2L-225ENST00000480321 CANXP27824 592 aaKnown RBP18.68■□□□□ 0.58
MCF2L-225ENST00000480321 NEFMP07197 916 aa18.68■□□□□ 0.58
MCF2L-225ENST00000480321 P3H3Q8IVL6 736 aa18.68■□□□□ 0.58
MCF2L-225ENST00000480321 ZNF777Q9ULD5 760 aaPredicted RBP18.61■□□□□ 0.57
MCF2L-225ENST00000480321 TONSLQ96HA7 1378 aa18.55■□□□□ 0.56
MCF2L-225ENST00000480321 EIF5BO60841 1220 aaKnown RBP18.53■□□□□ 0.56
MCF2L-225ENST00000480321 ESF1Q9H501 851 aaKnown RBP18.53■□□□□ 0.56
MCF2L-225ENST00000480321 ZCCHC6Q5VYS8 1495 aaKnown RBP18.53■□□□□ 0.56
MCF2L-225ENST00000480321 FKBP8Q14318 412 aa18.51■□□□□ 0.55
MCF2L-225ENST00000480321 ANP32BQ92688 251 aaKnown RBP18.45■□□□□ 0.54
MCF2L-225ENST00000480321 NPM2Q86SE8 214 aaKnown RBP18.45■□□□□ 0.54
MCF2L-225ENST00000480321 STAG3Q9UJ98 1225 aa18.43■□□□□ 0.54
MCF2L-225ENST00000480321 CHGAP10645 457 aaKnown RBP18.42■□□□□ 0.54
MCF2L-225ENST00000480321 UPF2Q9HAU5 1272 aaKnown RBP18.42■□□□□ 0.54
MCF2L-225ENST00000480321 HNRNPUQ00839 825 aaKnown RBP eCLIP18.41■□□□□ 0.54
MCF2L-225ENST00000480321 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
MCF2L-225ENST00000480321 NPM1P06748 294 aaKnown RBP eCLIP18.36■□□□□ 0.53
MCF2L-225ENST00000480321 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.34■□□□□ 0.53
MCF2L-225ENST00000480321 DDX10Q13206 875 aaKnown RBP18.34■□□□□ 0.53
MCF2L-225ENST00000480321 GLIPR1L2Q4G1C9 344 aa18.34■□□□□ 0.53
MCF2L-225ENST00000480321 SCRIBQ14160 1630 aa18.33■□□□□ 0.53
MCF2L-225ENST00000480321 CCDC136Q96JN2 1154 aa18.29■□□□□ 0.52
MCF2L-225ENST00000480321 CCDC180Q9P1Z9 1646 aa18.29■□□□□ 0.52
MCF2L-225ENST00000480321 HSP90AA1P07900 732 aaKnown RBP18.28■□□□□ 0.52
MCF2L-225ENST00000480321 EEA1Q15075 1411 aa18.28■□□□□ 0.52
MCF2L-225ENST00000480321 FAM9BQ8IZU0 186 aa18.27■□□□□ 0.52
MCF2L-225ENST00000480321 TMC1Q8TDI8 760 aa18.25■□□□□ 0.51
MCF2L-225ENST00000480321 SCAF1Q9H7N4 1312 aaKnown RBP18.22■□□□□ 0.51
MCF2L-225ENST00000480321 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.2■□□□□ 0.53e-6■■□□□ 13.8
MCF2L-225ENST00000480321 CLIP1P30622 1438 aa18.19■□□□□ 0.5
MCF2L-225ENST00000480321 MRS2Q9HD23 443 aa18.18■□□□□ 0.5
MCF2L-225ENST00000480321 NBR1Q14596 966 aa18.17■□□□□ 0.5
MCF2L-225ENST00000480321 MIER1Q8N108 512 aa18.17■□□□□ 0.5
MCF2L-225ENST00000480321 CHIC2Q9UKJ5 165 aa18.17■□□□□ 0.5
MCF2L-225ENST00000480321 WDR43Q15061 677 aaKnown RBP eCLIP18.16■□□□□ 0.5
MCF2L-225ENST00000480321 GOLGA3Q08378 1498 aa18.14■□□□□ 0.49
MCF2L-225ENST00000480321 DDRGK1Q96HY6 314 aa18.14■□□□□ 0.49
MCF2L-225ENST00000480321 SALL2Q9Y467 1007 aaPredicted RBP18.13■□□□□ 0.49
MCF2L-225ENST00000480321 MTUS2Q5JR59 1369 aa18.13■□□□□ 0.49
MCF2L-225ENST00000480321 A0A0G2JS52 829 aa18.12■□□□□ 0.49
MCF2L-225ENST00000480321 EIF4G2P78344 907 aaKnown RBP eCLIP18.12■□□□□ 0.49
MCF2L-225ENST00000480321 ANP32EQ9BTT0 268 aa18.1■□□□□ 0.49
MCF2L-225ENST00000480321 TSPY4P0CV99 314 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms