RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 DCAF8L2P0C7V8 631 aa21.62■■□□□ 1.05
PTPRE-208ENST00000479896 SUPT5HO00267 1087 aaKnown RBP20.18■□□□□ 0.82
PTPRE-208ENST00000479896 NISCHQ9Y2I1 1504 aa19.74■□□□□ 0.75
PTPRE-208ENST00000479896 FAM9AQ8IZU1 332 aaPredicted RBP19.73■□□□□ 0.75
PTPRE-208ENST00000479896 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
PTPRE-208ENST00000479896 EHMT2Q96KQ7 1210 aa19.71■□□□□ 0.75
PTPRE-208ENST00000479896 APLP2Q06481 763 aa19.69■□□□□ 0.74
PTPRE-208ENST00000479896 PELP1Q8IZL8 1130 aaKnown RBP19.69■□□□□ 0.74
PTPRE-208ENST00000479896 TTBK1Q5TCY1 1321 aaPredicted RBP19.05■□□□□ 0.64
PTPRE-208ENST00000479896 ATP1B4Q9UN42 357 aaPredicted RBP18.99■□□□□ 0.63
PTPRE-208ENST00000479896 RANGAP1P46060 587 aaPredicted RBP18.98■□□□□ 0.63
PTPRE-208ENST00000479896 ERICH6Q7L0X2 663 aa18.84■□□□□ 0.61
PTPRE-208ENST00000479896 CCER1Q8TC90 406 aaPredicted RBP18.83■□□□□ 0.61
PTPRE-208ENST00000479896 PCGF6Q9BYE7 350 aa18.79■□□□□ 0.6
PTPRE-208ENST00000479896 TRIM41Q8WV44 630 aa18.75■□□□□ 0.59
PTPRE-208ENST00000479896 UBTFP17480 764 aaKnown RBP18.69■□□□□ 0.58
PTPRE-208ENST00000479896 CENPBP07199 599 aaPredicted RBP18.67■□□□□ 0.58
PTPRE-208ENST00000479896 ZEB1P37275 1124 aaPredicted RBP18.63■□□□□ 0.57
PTPRE-208ENST00000479896 MYT1LQ9UL68 1186 aa18.53■□□□□ 0.56
PTPRE-208ENST00000479896 NEFLP07196 543 aa18.5■□□□□ 0.55
PTPRE-208ENST00000479896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.38■□□□□ 0.53
PTPRE-208ENST00000479896 HNRNPUL2Q1KMD3 747 aaKnown RBP18.38■□□□□ 0.53
PTPRE-208ENST00000479896 YTHDC1Q96MU7 727 aaKnown RBP18.2■□□□□ 0.5
PTPRE-208ENST00000479896 POLR3GLQ9BT43 218 aa18.17■□□□□ 0.5
PTPRE-208ENST00000479896 DAXXQ9UER7 740 aaPredicted RBP18.14■□□□□ 0.49
PTPRE-208ENST00000479896 ITGAEP38570 1179 aa18.1■□□□□ 0.49
PTPRE-208ENST00000479896 CHIC1Q5VXU3 224 aa18.09■□□□□ 0.49
PTPRE-208ENST00000479896 PPARGC1BQ86YN6 1023 aaKnown RBP18.06■□□□□ 0.48
PTPRE-208ENST00000479896 SLC4A1APQ9BWU0 796 aaKnown RBP18.03■□□□□ 0.48
PTPRE-208ENST00000479896 TRIM26Q12899 539 aaPredicted RBP17.89■□□□□ 0.45
PTPRE-208ENST00000479896 CNGB1Q14028 1251 aaPredicted RBP17.86■□□□□ 0.45
PTPRE-208ENST00000479896 MYT1Q01538 1121 aa17.76■□□□□ 0.43
PTPRE-208ENST00000479896 CLSPNQ9HAW4 1339 aa17.71■□□□□ 0.43
PTPRE-208ENST00000479896 TRIM52Q96A61 297 aa17.68■□□□□ 0.42
PTPRE-208ENST00000479896 FAM50AQ14320 339 aaKnown RBP17.67■□□□□ 0.42
PTPRE-208ENST00000479896 ZNF316A6NFI3 1004 aaPredicted RBP17.67■□□□□ 0.42
PTPRE-208ENST00000479896 HRCP23327 699 aa17.57■□□□□ 0.4
PTPRE-208ENST00000479896 FBLN2P98095 1184 aa17.56■□□□□ 0.4
PTPRE-208ENST00000479896 ZBTB47Q9UFB7 747 aaPredicted RBP17.55■□□□□ 0.4
PTPRE-208ENST00000479896 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
PTPRE-208ENST00000479896 LOC105371045A0A1W2PR82 267 aa17.52■□□□□ 0.4
PTPRE-208ENST00000479896 BCANQ96GW7 911 aa17.51■□□□□ 0.39
PTPRE-208ENST00000479896 RTL5Q5HYW3 569 aaPredicted RBP17.5■□□□□ 0.39
PTPRE-208ENST00000479896 ABCC9O60706 1549 aa17.47■□□□□ 0.39
PTPRE-208ENST00000479896 SLC24A1O60721 1099 aa17.46■□□□□ 0.39
PTPRE-208ENST00000479896 ZNF326Q5BKZ1 582 aaKnown RBP17.45■□□□□ 0.38
PTPRE-208ENST00000479896 NEUROD1Q13562 356 aa17.43■□□□□ 0.38
PTPRE-208ENST00000479896 NEFMP07197 916 aa17.42■□□□□ 0.38
PTPRE-208ENST00000479896 ESF1Q9H501 851 aaKnown RBP17.34■□□□□ 0.37
PTPRE-208ENST00000479896 CANXP27824 592 aaKnown RBP17.33■□□□□ 0.37
PTPRE-208ENST00000479896 ANP32CO43423 234 aa17.3■□□□□ 0.36
PTPRE-208ENST00000479896 DIEXFQ68CQ4 756 aaKnown RBP17.29■□□□□ 0.36
PTPRE-208ENST00000479896 BCL11AQ9H165 835 aa17.21■□□□□ 0.35
PTPRE-208ENST00000479896 CDK11AQ9UQ88 783 aaPredicted RBP17.2■□□□□ 0.34
PTPRE-208ENST00000479896 ARID3CA6NKF2 412 aa17.19■□□□□ 0.34
PTPRE-208ENST00000479896 ZNF777Q9ULD5 760 aaPredicted RBP17.19■□□□□ 0.34
PTPRE-208ENST00000479896 STAG3Q9UJ98 1225 aa17.18■□□□□ 0.34
PTPRE-208ENST00000479896 NPM1P06748 294 aaKnown RBP eCLIP17.15■□□□□ 0.34
PTPRE-208ENST00000479896 P3H3Q8IVL6 736 aa17.14■□□□□ 0.33
PTPRE-208ENST00000479896 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
PTPRE-208ENST00000479896 CHGAP10645 457 aaKnown RBP17.07■□□□□ 0.32
PTPRE-208ENST00000479896 CSRNP3Q8WYN3 585 aa16.93■□□□□ 0.3
PTPRE-208ENST00000479896 ANP32AP39687 249 aaKnown RBP16.88■□□□□ 0.29
PTPRE-208ENST00000479896 SCAF1Q9H7N4 1312 aaKnown RBP16.85■□□□□ 0.29
PTPRE-208ENST00000479896 HSP90AA1P07900 732 aaKnown RBP16.85■□□□□ 0.29
PTPRE-208ENST00000479896 TONSLQ96HA7 1378 aa16.84■□□□□ 0.29
PTPRE-208ENST00000479896 ANP32BQ92688 251 aaKnown RBP16.83■□□□□ 0.29
PTPRE-208ENST00000479896 UPF2Q9HAU5 1272 aaKnown RBP16.81■□□□□ 0.28
PTPRE-208ENST00000479896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTPRE-208ENST00000479896 GTF3C3Q9Y5Q9 886 aa16.78■□□□□ 0.28
PTPRE-208ENST00000479896 NPM2Q86SE8 214 aaKnown RBP16.78■□□□□ 0.28
PTPRE-208ENST00000479896 A0A0G2JS52 829 aa16.77■□□□□ 0.27
PTPRE-208ENST00000479896 TSPY4P0CV99 314 aa16.73■□□□□ 0.27
PTPRE-208ENST00000479896 TSPY10P0CW01 314 aa16.73■□□□□ 0.27
PTPRE-208ENST00000479896 SCRIBQ14160 1630 aa16.72■□□□□ 0.27
PTPRE-208ENST00000479896 CHMP7Q8WUX9 453 aaPredicted RBP16.71■□□□□ 0.27
PTPRE-208ENST00000479896 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.71■□□□□ 0.26
PTPRE-208ENST00000479896 WDR43Q15061 677 aaKnown RBP eCLIP16.7■□□□□ 0.26
PTPRE-208ENST00000479896 PPP1R15AO75807 674 aaPredicted RBP16.68■□□□□ 0.26
PTPRE-208ENST00000479896 ZBTB7CA1YPR0 619 aa16.67■□□□□ 0.26
PTPRE-208ENST00000479896 CHIC2Q9UKJ5 165 aa16.67■□□□□ 0.26
PTPRE-208ENST00000479896 C14orf37Q86TY3 774 aa16.66■□□□□ 0.26
PTPRE-208ENST00000479896 FAM9BQ8IZU0 186 aa16.64■□□□□ 0.25
PTPRE-208ENST00000479896 MYH16Q9H6N6 1097 aa16.63■□□□□ 0.25
PTPRE-208ENST00000479896 CDK11BP21127 795 aaKnown RBP16.63■□□□□ 0.25
PTPRE-208ENST00000479896 TMC1Q8TDI8 760 aa16.63■□□□□ 0.25
PTPRE-208ENST00000479896 HNRNPUQ00839 825 aaKnown RBP eCLIP16.61■□□□□ 0.25
PTPRE-208ENST00000479896 HAP1P54257 671 aaPredicted RBP16.61■□□□□ 0.25
PTPRE-208ENST00000479896 KDM2AQ9Y2K7 1162 aa16.6■□□□□ 0.25
PTPRE-208ENST00000479896 SALL2Q9Y467 1007 aaPredicted RBP16.6■□□□□ 0.25
PTPRE-208ENST00000479896 MTUS2Q5JR59 1369 aa16.58■□□□□ 0.25
PTPRE-208ENST00000479896 PLEKHG5O94827 1062 aa16.56■□□□□ 0.24
PTPRE-208ENST00000479896 ARID4BQ4LE39 1312 aaPredicted RBP16.56■□□□□ 0.24
PTPRE-208ENST00000479896 FKBP8Q14318 412 aa16.54■□□□□ 0.24
PTPRE-208ENST00000479896 DDX10Q13206 875 aaKnown RBP16.52■□□□□ 0.24
PTPRE-208ENST00000479896 KCNH8Q96L42 1107 aa16.52■□□□□ 0.24
PTPRE-208ENST00000479896 CCDC136Q96JN2 1154 aa16.49■□□□□ 0.23
PTPRE-208ENST00000479896 PLEKHD1A6NEE1 506 aa16.48■□□□□ 0.23
PTPRE-208ENST00000479896 ACIN1Q9UKV3 1341 aaKnown RBP16.47■□□□□ 0.23
PTPRE-208ENST00000479896 SENP3Q9H4L4 574 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms