RNA–Protein interactions for RNA: ENST00000477243.1

HMGN4-202, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

TSL 3

Gene HMGN4, Length 113 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-202ENST00000477243 DNAJC5Q9H3Z4 198 aa7.73□□□□□ -1.17
HMGN4-202ENST00000477243 CHIC1Q5VXU3 224 aa7.41□□□□□ -1.22
HMGN4-202ENST00000477243 ILDR1Q86SU0 546 aaPredicted RBP6.99□□□□□ -1.29
HMGN4-202ENST00000477243 AEBP2Q6ZN18 517 aaPredicted RBP6.94□□□□□ -1.3
HMGN4-202ENST00000477243 SOCS7O14512 581 aa6.68□□□□□ -1.34
HMGN4-202ENST00000477243 DNAJC5BQ9UF47 199 aa6.55□□□□□ -1.36
HMGN4-202ENST00000477243 PHF23Q9BUL5 403 aaPredicted RBP6.53□□□□□ -1.36
HMGN4-202ENST00000477243 TRIM41Q8WV44 630 aa6.52□□□□□ -1.37
HMGN4-202ENST00000477243 LMTK3Q96Q04 1460 aa6.51□□□□□ -1.37
HMGN4-202ENST00000477243 SLC24A1O60721 1099 aa6.38□□□□□ -1.39
HMGN4-202ENST00000477243 EHMT2Q96KQ7 1210 aa6.38□□□□□ -1.39
HMGN4-202ENST00000477243 PLPPR3Q6T4P5 718 aa6.32□□□□□ -1.4
HMGN4-202ENST00000477243 IFFO2Q5TF58 517 aa6.17□□□□□ -1.42
HMGN4-202ENST00000477243 ILDR2Q71H61 639 aa6.12□□□□□ -1.43
HMGN4-202ENST00000477243 KCNA4P22459 653 aa6.08□□□□□ -1.44
HMGN4-202ENST00000477243 PCDH10Q9P2E7 1040 aa6.06□□□□□ -1.44
HMGN4-202ENST00000477243 CSRNP3Q8WYN3 585 aa6.05□□□□□ -1.44
HMGN4-202ENST00000477243 AMER1Q5JTC6 1135 aaPredicted RBP6.04□□□□□ -1.44
HMGN4-202ENST00000477243 FBXO41Q8TF61 875 aa6.04□□□□□ -1.44
HMGN4-202ENST00000477243 DISP3Q9P2K9 1392 aa5.97□□□□□ -1.45
HMGN4-202ENST00000477243 SLC4A1APQ9BWU0 796 aaKnown RBP5.95□□□□□ -1.46
HMGN4-202ENST00000477243 RTN4Q9NQC3 1192 aaKnown RBP5.95□□□□□ -1.46
HMGN4-202ENST00000477243 SENP3Q9H4L4 574 aaPredicted RBP5.92□□□□□ -1.46
HMGN4-202ENST00000477243 SLC34A2O95436 690 aa5.83□□□□□ -1.48
HMGN4-202ENST00000477243 ADRA2BP18089 450 aa5.79□□□□□ -1.48
HMGN4-202ENST00000477243 NCBP3Q53F19 620 aaKnown RBP5.79□□□□□ -1.48
HMGN4-202ENST00000477243 ERCC6L2Q5T890 1561 aa5.72□□□□□ -1.49
HMGN4-202ENST00000477243 SPATA31D1Q6ZQQ2 1576 aa5.66□□□□□ -1.5
HMGN4-202ENST00000477243 IGSF5Q9NSI5 407 aa5.64□□□□□ -1.51
HMGN4-202ENST00000477243 PPP4R3CPQ6ZMV5 832 aa5.61□□□□□ -1.51
HMGN4-202ENST00000477243 DAXXQ9UER7 740 aaPredicted RBP5.6□□□□□ -1.51
HMGN4-202ENST00000477243 CUX2O14529 1486 aa5.59□□□□□ -1.51
HMGN4-202ENST00000477243 BCANQ96GW7 911 aa5.57□□□□□ -1.52
HMGN4-202ENST00000477243 ZBTB22O15209 634 aa5.56□□□□□ -1.52
HMGN4-202ENST00000477243 PPP6R1Q9UPN7 881 aa5.56□□□□□ -1.52
HMGN4-202ENST00000477243 NPM3O75607 178 aaKnown RBP5.52□□□□□ -1.53
HMGN4-202ENST00000477243 PLCB2Q00722 1185 aa5.5□□□□□ -1.53
HMGN4-202ENST00000477243 ARXQ96QS3 562 aa5.49□□□□□ -1.53
HMGN4-202ENST00000477243 TAOK2Q9UL54 1235 aa5.49□□□□□ -1.53
HMGN4-202ENST00000477243 TRHP20396 242 aaPredicted RBP5.48□□□□□ -1.53
HMGN4-202ENST00000477243 FOXD4L1Q9NU39 408 aa5.48□□□□□ -1.53
HMGN4-202ENST00000477243 PRKCSHP14314 528 aaPredicted RBP5.47□□□□□ -1.53
HMGN4-202ENST00000477243 FKBP8Q14318 412 aa5.45□□□□□ -1.54
HMGN4-202ENST00000477243 ERICH6Q7L0X2 663 aa5.44□□□□□ -1.54
HMGN4-202ENST00000477243 HAP1P54257 671 aaPredicted RBP5.42□□□□□ -1.54
HMGN4-202ENST00000477243 PABPN1Q86U42 306 aaKnown RBP eCLIP5.41□□□□□ -1.54
HMGN4-202ENST00000477243 VSIG10Q8N0Z9 540 aa5.41□□□□□ -1.54
HMGN4-202ENST00000477243 TPRNQ4KMQ1 711 aa5.37□□□□□ -1.55
HMGN4-202ENST00000477243 CNKSR2Q8WXI2 1034 aa5.36□□□□□ -1.55
HMGN4-202ENST00000477243 FOXD1Q16676 465 aa5.34□□□□□ -1.55
HMGN4-202ENST00000477243 HOMEZQ8IX15 550 aa5.31□□□□□ -1.56
HMGN4-202ENST00000477243 TIMELESSQ9UNS1 1208 aa5.31□□□□□ -1.56
HMGN4-202ENST00000477243 TULP1O00294 542 aaPredicted RBP5.3□□□□□ -1.56
HMGN4-202ENST00000477243 ATXN8OSP0DMR3 200 aa5.3□□□□□ -1.56
HMGN4-202ENST00000477243 GTF3C3Q9Y5Q9 886 aa5.28□□□□□ -1.56
HMGN4-202ENST00000477243 SCAF1Q9H7N4 1312 aaKnown RBP5.27□□□□□ -1.57
HMGN4-202ENST00000477243 HECW2Q9P2P5 1572 aa5.25□□□□□ -1.57
HMGN4-202ENST00000477243 ABCC9O60706 1549 aa5.25□□□□□ -1.57
HMGN4-202ENST00000477243 RANGAP1P46060 587 aaPredicted RBP5.24□□□□□ -1.57
HMGN4-202ENST00000477243 DCAF8L2P0C7V8 631 aa5.22□□□□□ -1.57
HMGN4-202ENST00000477243 PIAS4Q8N2W9 510 aaPredicted RBP5.22□□□□□ -1.57
HMGN4-202ENST00000477243 FBXO3Q9UK99 471 aa5.21□□□□□ -1.58
HMGN4-202ENST00000477243 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.2□□□□□ -1.58
HMGN4-202ENST00000477243 KDM2AQ9Y2K7 1162 aa5.17□□□□□ -1.58
HMGN4-202ENST00000477243 SYNJ2O15056 1496 aa5.15□□□□□ -1.58
HMGN4-202ENST00000477243 MYCNP04198 464 aaPredicted RBP5.14□□□□□ -1.59
HMGN4-202ENST00000477243 TMEM132AQ24JP5 1023 aa5.14□□□□□ -1.59
HMGN4-202ENST00000477243 BBXQ8WY36 941 aaPredicted RBP5.14□□□□□ -1.59
HMGN4-202ENST00000477243 C14orf37Q86TY3 774 aa5.12□□□□□ -1.59
HMGN4-202ENST00000477243 NBR1Q14596 966 aa5.11□□□□□ -1.59
HMGN4-202ENST00000477243 RNF216Q9NWF9 866 aaPredicted RBP5.11□□□□□ -1.59
HMGN4-202ENST00000477243 KDM4FA0A1W2PPD8 638 aa5.1□□□□□ -1.59
HMGN4-202ENST00000477243 FBLN2P98095 1184 aa5.1□□□□□ -1.59
HMGN4-202ENST00000477243 PAXIP1Q6ZW49 1069 aaPredicted RBP5.09□□□□□ -1.59
HMGN4-202ENST00000477243 MPNDQ8N594 471 aa5.09□□□□□ -1.59
HMGN4-202ENST00000477243 CFAP44Q96MT7 982 aa5.07□□□□□ -1.6
HMGN4-202ENST00000477243 PODXL2Q9NZ53 605 aa5.06□□□□□ -1.6
HMGN4-202ENST00000477243 SLC4A2P04920 1241 aa5.05□□□□□ -1.6
HMGN4-202ENST00000477243 SPRYD3Q8NCJ5 442 aa5.05□□□□□ -1.6
HMGN4-202ENST00000477243 CECR2Q9BXF3 1484 aa5.04□□□□□ -1.6
HMGN4-202ENST00000477243 VASPP50552 380 aaPredicted RBP5.03□□□□□ -1.6
HMGN4-202ENST00000477243 PKD2Q13563 968 aa5.03□□□□□ -1.6
HMGN4-202ENST00000477243 RIMBP3CA6NJZ7 1639 aa5.01□□□□□ -1.61
HMGN4-202ENST00000477243 RIMBP3BA6NNM3 1639 aa5.01□□□□□ -1.61
HMGN4-202ENST00000477243 RIMBP3Q9UFD9 1639 aa5.01□□□□□ -1.61
HMGN4-202ENST00000477243 SENP3-EIF4A1A0A087X0R7 540 aa5□□□□□ -1.61
HMGN4-202ENST00000477243 IFNLR1Q8IU57 520 aaPredicted RBP4.99□□□□□ -1.61
HMGN4-202ENST00000477243 TSHZ2Q9NRE2 1034 aa4.99□□□□□ -1.61
HMGN4-202ENST00000477243 RBAK-RBAKDNI3L0D1 243 aa4.98□□□□□ -1.61
HMGN4-202ENST00000477243 NPM2Q86SE8 214 aaKnown RBP4.97□□□□□ -1.61
HMGN4-202ENST00000477243 CACNA1AO00555 2505 aa4.96□□□□□ -1.62
HMGN4-202ENST00000477243 SRCAPQ6ZRS2 3230 aa4.95□□□□□ -1.62
HMGN4-202ENST00000477243 ECM2O94769 699 aaPredicted RBP4.95□□□□□ -1.62
HMGN4-202ENST00000477243 NPM1P06748 294 aaKnown RBP eCLIP4.95□□□□□ -1.62
HMGN4-202ENST00000477243 PELP1Q8IZL8 1130 aaKnown RBP4.94□□□□□ -1.62
HMGN4-202ENST00000477243 TTBK1Q5TCY1 1321 aaPredicted RBP4.94□□□□□ -1.62
HMGN4-202ENST00000477243 SPDYE4A6NLX3 237 aa4.93□□□□□ -1.62
HMGN4-202ENST00000477243 MYT1Q01538 1121 aa4.93□□□□□ -1.62
HMGN4-202ENST00000477243 OSCARQ8IYS5 282 aa4.93□□□□□ -1.62
HMGN4-202ENST00000477243 CERKQ8TCT0 537 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms