RNA–Protein interactions for RNA: ENST00000473515.5

SCML4-209, Transcript of Scm polycomb group protein like 4, humanhuman

TSL 2

Gene SCML4, Length 4,297 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCML4-209ENST00000473515 NISCHQ9Y2I1 1504 aa17.33■□□□□ 0.36
SCML4-209ENST00000473515 DCAF8L2P0C7V8 631 aa16.81■□□□□ 0.28
SCML4-209ENST00000473515 SHROOM4Q9ULL8 1493 aa16.16■□□□□ 0.18
SCML4-209ENST00000473515 SUPT5HO00267 1087 aaKnown RBP16.15■□□□□ 0.18
SCML4-209ENST00000473515 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
SCML4-209ENST00000473515 FAM9AQ8IZU1 332 aaPredicted RBP15.16■□□□□ 0.02
SCML4-209ENST00000473515 PCGF6Q9BYE7 350 aa15.11■□□□□ 0.01
SCML4-209ENST00000473515 TRIM41Q8WV44 630 aa14.9□□□□□ -0.02
SCML4-209ENST00000473515 TTBK1Q5TCY1 1321 aaPredicted RBP14.85□□□□□ -0.03
SCML4-209ENST00000473515 HRCP23327 699 aa14.85□□□□□ -0.03
SCML4-209ENST00000473515 CHIC1Q5VXU3 224 aa14.74□□□□□ -0.05
SCML4-209ENST00000473515 RANGAP1P46060 587 aaPredicted RBP14.71□□□□□ -0.05
SCML4-209ENST00000473515 ABCC9O60706 1549 aa14.68□□□□□ -0.06
SCML4-209ENST00000473515 APLP2Q06481 763 aa14.66□□□□□ -0.06
SCML4-209ENST00000473515 LOC105371045A0A1W2PR82 267 aa14.65□□□□□ -0.06
SCML4-209ENST00000473515 ZCCHC6Q5VYS8 1495 aaKnown RBP14.61□□□□□ -0.07
SCML4-209ENST00000473515 PPARGC1BQ86YN6 1023 aaKnown RBP14.58□□□□□ -0.08
SCML4-209ENST00000473515 UBTFP17480 764 aaKnown RBP14.57□□□□□ -0.08
SCML4-209ENST00000473515 MYO15BQ96JP2 1530 aa14.53□□□□□ -0.08
SCML4-209ENST00000473515 TRIM26Q12899 539 aaPredicted RBP14.46□□□□□ -0.09
SCML4-209ENST00000473515 PABPN1Q86U42 306 aaKnown RBP eCLIP14.46□□□□□ -0.1
SCML4-209ENST00000473515 CCDC180Q9P1Z9 1646 aa14.45□□□□□ -0.1
SCML4-209ENST00000473515 ZEB1P37275 1124 aaPredicted RBP14.45□□□□□ -0.1
SCML4-209ENST00000473515 CCER1Q8TC90 406 aaPredicted RBP14.4□□□□□ -0.1
SCML4-209ENST00000473515 DCAF1Q9Y4B6 1507 aa14.37□□□□□ -0.11
SCML4-209ENST00000473515 ATP1B4Q9UN42 357 aaPredicted RBP14.36□□□□□ -0.11
SCML4-209ENST00000473515 PELP1Q8IZL8 1130 aaKnown RBP14.24□□□□□ -0.13
SCML4-209ENST00000473515 SCRIBQ14160 1630 aa14.2□□□□□ -0.14
SCML4-209ENST00000473515 CENPBP07199 599 aaPredicted RBP14.18□□□□□ -0.14
SCML4-209ENST00000473515 YTHDC1Q96MU7 727 aaKnown RBP14.11□□□□□ -0.15
SCML4-209ENST00000473515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.09□□□□□ -0.15
SCML4-209ENST00000473515 HNRNPUL2Q1KMD3 747 aaKnown RBP14.08□□□□□ -0.16
SCML4-209ENST00000473515 ITGAEP38570 1179 aa14.07□□□□□ -0.16
SCML4-209ENST00000473515 DIEXFQ68CQ4 756 aaKnown RBP13.89□□□□□ -0.19
SCML4-209ENST00000473515 CSRNP3Q8WYN3 585 aa13.87□□□□□ -0.19
SCML4-209ENST00000473515 RSF1Q96T23 1441 aaPredicted RBP13.87□□□□□ -0.19
SCML4-209ENST00000473515 SCAF1Q9H7N4 1312 aaKnown RBP13.82□□□□□ -0.2
SCML4-209ENST00000473515 GTF3C3Q9Y5Q9 886 aa13.75□□□□□ -0.21
SCML4-209ENST00000473515 RB1CC1Q8TDY2 1594 aa13.74□□□□□ -0.21
SCML4-209ENST00000473515 FAM50AQ14320 339 aaKnown RBP13.73□□□□□ -0.21
SCML4-209ENST00000473515 CECR2Q9BXF3 1484 aa13.72□□□□□ -0.21
SCML4-209ENST00000473515 P3H3Q8IVL6 736 aa13.71□□□□□ -0.21
SCML4-209ENST00000473515 MYT1Q01538 1121 aa13.71□□□□□ -0.21
SCML4-209ENST00000473515 NACADO15069 1562 aa13.71□□□□□ -0.21
SCML4-209ENST00000473515 ACIN1Q9UKV3 1341 aaKnown RBP13.71□□□□□ -0.22
SCML4-209ENST00000473515 ZNF316A6NFI3 1004 aaPredicted RBP13.6□□□□□ -0.23
SCML4-209ENST00000473515 POLR3GLQ9BT43 218 aa13.59□□□□□ -0.23
SCML4-209ENST00000473515 ARID3CA6NKF2 412 aa13.59□□□□□ -0.23
SCML4-209ENST00000473515 FBLN2P98095 1184 aa13.59□□□□□ -0.23
SCML4-209ENST00000473515 NEUROD1Q13562 356 aa13.59□□□□□ -0.23
SCML4-209ENST00000473515 CNGB1Q14028 1251 aaPredicted RBP13.59□□□□□ -0.23
SCML4-209ENST00000473515 MYT1LQ9UL68 1186 aa13.56□□□□□ -0.24
SCML4-209ENST00000473515 NEFLP07196 543 aa13.56□□□□□ -0.24
SCML4-209ENST00000473515 MROH2BQ7Z745 1585 aa13.52□□□□□ -0.25
SCML4-209ENST00000473515 TRIM52Q96A61 297 aa13.51□□□□□ -0.25
SCML4-209ENST00000473515 BAZ1AQ9NRL2 1556 aaPredicted RBP13.49□□□□□ -0.25
SCML4-209ENST00000473515 ERICH6Q7L0X2 663 aa13.46□□□□□ -0.25
SCML4-209ENST00000473515 WRNQ14191 1432 aaPredicted RBP eCLIP13.46□□□□□ -0.26
SCML4-209ENST00000473515 BAZ1BQ9UIG0 1483 aaKnown RBP13.45□□□□□ -0.26
SCML4-209ENST00000473515 CLIP1P30622 1438 aa13.42□□□□□ -0.26
SCML4-209ENST00000473515 CEP162Q5TB80 1403 aa13.42□□□□□ -0.26
SCML4-209ENST00000473515 BCANQ96GW7 911 aa13.38□□□□□ -0.27
SCML4-209ENST00000473515 SOGA1O94964 1423 aa13.36□□□□□ -0.27
SCML4-209ENST00000473515 WIZO95785 1651 aa13.36□□□□□ -0.27
SCML4-209ENST00000473515 ZNF326Q5BKZ1 582 aaKnown RBP13.35□□□□□ -0.27
SCML4-209ENST00000473515 MIER1Q8N108 512 aa13.34□□□□□ -0.27
SCML4-209ENST00000473515 CCDC88BA6NC98 1476 aa13.34□□□□□ -0.27
SCML4-209ENST00000473515 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
SCML4-209ENST00000473515 ABCC8Q09428 1581 aa13.33□□□□□ -0.27
SCML4-209ENST00000473515 EEA1Q15075 1411 aa13.33□□□□□ -0.27
SCML4-209ENST00000473515 ZNF777Q9ULD5 760 aaPredicted RBP13.33□□□□□ -0.28
SCML4-209ENST00000473515 TNIKQ9UKE5 1360 aa13.31□□□□□ -0.28
SCML4-209ENST00000473515 CHIC2Q9UKJ5 165 aa13.26□□□□□ -0.29
SCML4-209ENST00000473515 CEP164Q9UPV0 1460 aa13.24□□□□□ -0.29
SCML4-209ENST00000473515 AEBP2Q6ZN18 517 aaPredicted RBP13.23□□□□□ -0.29
SCML4-209ENST00000473515 KIF27Q86VH2 1401 aa13.23□□□□□ -0.29
SCML4-209ENST00000473515 ANP32CO43423 234 aa13.21□□□□□ -0.29
SCML4-209ENST00000473515 CDK11AQ9UQ88 783 aaPredicted RBP13.21□□□□□ -0.29
SCML4-209ENST00000473515 MTUS2Q5JR59 1369 aa13.19□□□□□ -0.3
SCML4-209ENST00000473515 TOP2AP11388 1531 aaKnown RBP13.19□□□□□ -0.3
SCML4-209ENST00000473515 SLC4A1APQ9BWU0 796 aaKnown RBP13.18□□□□□ -0.3
SCML4-209ENST00000473515 DDX10Q13206 875 aaKnown RBP13.15□□□□□ -0.3
SCML4-209ENST00000473515 CHMP7Q8WUX9 453 aaPredicted RBP13.15□□□□□ -0.3
SCML4-209ENST00000473515 HIRIP3Q9BW71 556 aaPredicted RBP13.15□□□□□ -0.3
SCML4-209ENST00000473515 TONSLQ96HA7 1378 aa13.14□□□□□ -0.31
SCML4-209ENST00000473515 CLSPNQ9HAW4 1339 aa13.14□□□□□ -0.31
SCML4-209ENST00000473515 CUX2O14529 1486 aa13.12□□□□□ -0.31
SCML4-209ENST00000473515 EIF4G1Q04637 1599 aaKnown RBP13.11□□□□□ -0.31
SCML4-209ENST00000473515 SMARCA4P51532 1647 aa13.11□□□□□ -0.31
SCML4-209ENST00000473515 FKBP8Q14318 412 aa13.11□□□□□ -0.31
SCML4-209ENST00000473515 RRP7BPQ9NSQ0 103 aa13.11□□□□□ -0.31
SCML4-209ENST00000473515 SMARCA2P51531 1590 aa13.1□□□□□ -0.31
SCML4-209ENST00000473515 RUSC2Q8N2Y8 1516 aa13.09□□□□□ -0.31
SCML4-209ENST00000473515 ATAD2BQ9ULI0 1458 aa13.09□□□□□ -0.31
SCML4-209ENST00000473515 CARMIL1Q5VZK9 1371 aa13.08□□□□□ -0.32
SCML4-209ENST00000473515 KANK4Q5T7N3 995 aaPredicted RBP13.06□□□□□ -0.32
SCML4-209ENST00000473515 VPS8Q8N3P4 1428 aa13.03□□□□□ -0.32
SCML4-209ENST00000473515 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.02□□□□□ -0.33
SCML4-209ENST00000473515 SIN3AQ96ST3 1273 aa13□□□□□ -0.33
SCML4-209ENST00000473515 TDRD9Q8NDG6 1382 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms