RNA–Protein interactions for RNA: ENST00000452776.1

SMCO1-202, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

TSL 1 (best)

Gene SMCO1, Length 1,846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-202ENST00000452776 AEBP2Q6ZN18 517 aaPredicted RBP19.22■□□□□ 0.67
SMCO1-202ENST00000452776 CHIC1Q5VXU3 224 aa18.07■□□□□ 0.48
SMCO1-202ENST00000452776 SENP3Q9H4L4 574 aaPredicted RBP16.64■□□□□ 0.25
SMCO1-202ENST00000452776 PHF23Q9BUL5 403 aaPredicted RBP16.24■□□□□ 0.19
SMCO1-202ENST00000452776 POTEDQ86YR6 584 aa15.95■□□□□ 0.14
SMCO1-202ENST00000452776 FOXD1Q16676 465 aa15.53■□□□□ 0.08
SMCO1-202ENST00000452776 MSH5O43196 834 aa14.97□□□□□ -0.01
SMCO1-202ENST00000452776 PELP1Q8IZL8 1130 aaKnown RBP14.68□□□□□ -0.06
SMCO1-202ENST00000452776 NISCHQ9Y2I1 1504 aa14.49□□□□□ -0.09
SMCO1-202ENST00000452776 MYT1Q01538 1121 aa14.41□□□□□ -0.1
SMCO1-202ENST00000452776 PIAS4Q8N2W9 510 aaPredicted RBP14.3□□□□□ -0.12
SMCO1-202ENST00000452776 HRCP23327 699 aa14.16□□□□□ -0.14
SMCO1-202ENST00000452776 PPP6R1Q9UPN7 881 aa13.81□□□□□ -0.2
SMCO1-202ENST00000452776 ADRA2BP18089 450 aa13.72□□□□□ -0.21
SMCO1-202ENST00000452776 TTBK1Q5TCY1 1321 aaPredicted RBP13.69□□□□□ -0.22
SMCO1-202ENST00000452776 PLPPR3Q6T4P5 718 aa13.64□□□□□ -0.23
SMCO1-202ENST00000452776 ZEB1P37275 1124 aaPredicted RBP13.5□□□□□ -0.25
SMCO1-202ENST00000452776 PCGF6Q9BYE7 350 aa13.48□□□□□ -0.25
SMCO1-202ENST00000452776 PPARGC1BQ86YN6 1023 aaKnown RBP13.46□□□□□ -0.26
SMCO1-202ENST00000452776 SCAF1Q9H7N4 1312 aaKnown RBP13.44□□□□□ -0.26
SMCO1-202ENST00000452776 DCAF1Q9Y4B6 1507 aa13.31□□□□□ -0.28
SMCO1-202ENST00000452776 CACNB1Q02641 598 aaPredicted RBP13.28□□□□□ -0.28
SMCO1-202ENST00000452776 TRIM26Q12899 539 aaPredicted RBP13.23□□□□□ -0.29
SMCO1-202ENST00000452776 ACIN1Q9UKV3 1341 aaKnown RBP13.18□□□□□ -0.3
SMCO1-202ENST00000452776 CCDC180Q9P1Z9 1646 aa13.14□□□□□ -0.31
SMCO1-202ENST00000452776 CENPBP07199 599 aaPredicted RBP13.13□□□□□ -0.31
SMCO1-202ENST00000452776 MYO15BQ96JP2 1530 aa13.07□□□□□ -0.32
SMCO1-202ENST00000452776 DMRT2Q9Y5R5 561 aa13.06□□□□□ -0.32
SMCO1-202ENST00000452776 SUPT5HO00267 1087 aaKnown RBP13.01□□□□□ -0.33
SMCO1-202ENST00000452776 GTF3C3Q9Y5Q9 886 aa12.97□□□□□ -0.33
SMCO1-202ENST00000452776 NEUROD1Q13562 356 aa12.95□□□□□ -0.34
SMCO1-202ENST00000452776 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
SMCO1-202ENST00000452776 MAPK8IP2Q13387 824 aaPredicted RBP12.84□□□□□ -0.35
SMCO1-202ENST00000452776 BCL11AQ9H165 835 aa12.81□□□□□ -0.36
SMCO1-202ENST00000452776 ERICH6Q7L0X2 663 aa12.8□□□□□ -0.36
SMCO1-202ENST00000452776 CLSPNQ9HAW4 1339 aa12.75□□□□□ -0.37
SMCO1-202ENST00000452776 SHROOM4Q9ULL8 1493 aa12.75□□□□□ -0.37
SMCO1-202ENST00000452776 DIEXFQ68CQ4 756 aaKnown RBP12.72□□□□□ -0.37
SMCO1-202ENST00000452776 ANP32EQ9BTT0 268 aa12.71□□□□□ -0.38
SMCO1-202ENST00000452776 LOC105371045A0A1W2PR82 267 aa12.65□□□□□ -0.39
SMCO1-202ENST00000452776 RNF39Q9H2S5 420 aa12.64□□□□□ -0.39
SMCO1-202ENST00000452776 FAM9AQ8IZU1 332 aaPredicted RBP12.59□□□□□ -0.39
SMCO1-202ENST00000452776 PRKCSHP14314 528 aaPredicted RBP12.55□□□□□ -0.4
SMCO1-202ENST00000452776 TRIM41Q8WV44 630 aa12.51□□□□□ -0.41
SMCO1-202ENST00000452776 CCER1Q8TC90 406 aaPredicted RBP12.49□□□□□ -0.41
SMCO1-202ENST00000452776 ZNF316A6NFI3 1004 aaPredicted RBP12.46□□□□□ -0.42
SMCO1-202ENST00000452776 C1QBPQ07021 282 aaKnown RBP12.46□□□□□ -0.42
SMCO1-202ENST00000452776 DCAF8L1A6NGE4 600 aa12.44□□□□□ -0.42
SMCO1-202ENST00000452776 APLP2Q06481 763 aa12.44□□□□□ -0.42
SMCO1-202ENST00000452776 MYT1LQ9UL68 1186 aa12.39□□□□□ -0.43
SMCO1-202ENST00000452776 ZCCHC6Q5VYS8 1495 aaKnown RBP12.39□□□□□ -0.43
SMCO1-202ENST00000452776 CSRNP3Q8WYN3 585 aa12.37□□□□□ -0.43
SMCO1-202ENST00000452776 TSHZ2Q9NRE2 1034 aa12.34□□□□□ -0.43
SMCO1-202ENST00000452776 POTEHQ6S545 545 aa12.34□□□□□ -0.43
SMCO1-202ENST00000452776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.31□□□□□ -0.44
SMCO1-202ENST00000452776 SUPT16HQ9Y5B9 1047 aaKnown RBP12.3□□□□□ -0.44
SMCO1-202ENST00000452776 YTHDC1Q96MU7 727 aaKnown RBP12.29□□□□□ -0.44
SMCO1-202ENST00000452776 HOXD11P31277 338 aaPredicted RBP12.26□□□□□ -0.45
SMCO1-202ENST00000452776 MIER1Q8N108 512 aa12.24□□□□□ -0.45
SMCO1-202ENST00000452776 ERICH6BQ5W0A0 696 aa12.13□□□□□ -0.47
SMCO1-202ENST00000452776 DNAJC5BQ9UF47 199 aa12.13□□□□□ -0.47
SMCO1-202ENST00000452776 RBM19Q9Y4C8 960 aaKnown RBP12.06□□□□□ -0.48
SMCO1-202ENST00000452776 FANCIQ9NVI1 1328 aa12.04□□□□□ -0.48
SMCO1-202ENST00000452776 WRNQ14191 1432 aaPredicted RBP eCLIP12.04□□□□□ -0.48
SMCO1-202ENST00000452776 PPP4R3CPQ6ZMV5 832 aa12.03□□□□□ -0.48
SMCO1-202ENST00000452776 NEFLP07196 543 aa11.97□□□□□ -0.49
SMCO1-202ENST00000452776 UBE2Q2Q8WVN8 375 aa11.96□□□□□ -0.49
SMCO1-202ENST00000452776 RNF216Q9NWF9 866 aaPredicted RBP11.94□□□□□ -0.5
SMCO1-202ENST00000452776 DEKP35659 375 aaKnown RBP11.9□□□□□ -0.5
SMCO1-202ENST00000452776 FKBP8Q14318 412 aa11.87□□□□□ -0.51
SMCO1-202ENST00000452776 ANO8Q9HCE9 1232 aaPredicted RBP11.86□□□□□ -0.51
SMCO1-202ENST00000452776 CDK11AQ9UQ88 783 aaPredicted RBP11.85□□□□□ -0.51
SMCO1-202ENST00000452776 DAXXQ9UER7 740 aaPredicted RBP11.83□□□□□ -0.52
SMCO1-202ENST00000452776 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
SMCO1-202ENST00000452776 RB1CC1Q8TDY2 1594 aa11.81□□□□□ -0.52
SMCO1-202ENST00000452776 ABCC9O60706 1549 aa11.8□□□□□ -0.52
SMCO1-202ENST00000452776 RSF1Q96T23 1441 aaPredicted RBP11.76□□□□□ -0.53
SMCO1-202ENST00000452776 TNIKQ9UKE5 1360 aa11.75□□□□□ -0.53
SMCO1-202ENST00000452776 BCANQ96GW7 911 aa11.75□□□□□ -0.53
SMCO1-202ENST00000452776 DCAF8L2P0C7V8 631 aa11.74□□□□□ -0.53
SMCO1-202ENST00000452776 KCNA4P22459 653 aa11.72□□□□□ -0.53
SMCO1-202ENST00000452776 SALL2Q9Y467 1007 aaPredicted RBP11.71□□□□□ -0.54
SMCO1-202ENST00000452776 EIF5BO60841 1220 aaKnown RBP11.7□□□□□ -0.54
SMCO1-202ENST00000452776 CEP162Q5TB80 1403 aa11.7□□□□□ -0.54
SMCO1-202ENST00000452776 CCER2I3L3R5 266 aa11.7□□□□□ -0.54
SMCO1-202ENST00000452776 RTL5Q5HYW3 569 aaPredicted RBP11.7□□□□□ -0.54
SMCO1-202ENST00000452776 EHMT2Q96KQ7 1210 aa11.68□□□□□ -0.54
SMCO1-202ENST00000452776 NCBP3Q53F19 620 aaKnown RBP11.67□□□□□ -0.54
SMCO1-202ENST00000452776 NOP58Q9Y2X3 529 aaKnown RBP11.67□□□□□ -0.54
SMCO1-202ENST00000452776 EEA1Q15075 1411 aa11.66□□□□□ -0.54
SMCO1-202ENST00000452776 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.63□□□□□ -0.55
SMCO1-202ENST00000452776 HNRNPUL2Q1KMD3 747 aaKnown RBP11.62□□□□□ -0.55
SMCO1-202ENST00000452776 GLIPR1L2Q4G1C9 344 aa11.62□□□□□ -0.55
SMCO1-202ENST00000452776 USP35Q9P2H5 1018 aa11.62□□□□□ -0.55
SMCO1-202ENST00000452776 C11orf95C9JLR9 678 aaPredicted RBP11.6□□□□□ -0.55
SMCO1-202ENST00000452776 PPP4R2Q9NY27 417 aa11.6□□□□□ -0.55
SMCO1-202ENST00000452776 ITGAEP38570 1179 aa11.59□□□□□ -0.55
SMCO1-202ENST00000452776 DHX57Q6P158 1386 aaKnown RBP11.56□□□□□ -0.56
SMCO1-202ENST00000452776 PKNOX2Q96KN3 472 aa11.56□□□□□ -0.56
SMCO1-202ENST00000452776 NPM3O75607 178 aaKnown RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms