RNA–Protein interactions for RNA: ENST00000444476.1

LINC00475-208, long intergenic non-protein coding RNA 475, humanhuman

TSL 3

Gene LINC00475, Length 456 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00475-208ENST00000444476 AEBP2Q6ZN18 517 aaPredicted RBP40.24■■■■■ 4.03
LINC00475-208ENST00000444476 CHIC1Q5VXU3 224 aa38.21■■■■□ 3.71
LINC00475-208ENST00000444476 SENP3Q9H4L4 574 aaPredicted RBP34.55■■■■□ 3.12
LINC00475-208ENST00000444476 PHF23Q9BUL5 403 aaPredicted RBP34■■■■□ 3.03
LINC00475-208ENST00000444476 FOXD1Q16676 465 aa32.08■■■□□ 2.73
LINC00475-208ENST00000444476 PLPPR3Q6T4P5 718 aa30.56■■■□□ 2.48
LINC00475-208ENST00000444476 MSH5O43196 834 aa30.24■■■□□ 2.43
LINC00475-208ENST00000444476 PIAS4Q8N2W9 510 aaPredicted RBP30.02■■■□□ 2.4
LINC00475-208ENST00000444476 PPP6R1Q9UPN7 881 aa29.82■■■□□ 2.36
LINC00475-208ENST00000444476 ADRA2BP18089 450 aa29.76■■■□□ 2.35
LINC00475-208ENST00000444476 POTEDQ86YR6 584 aa29.59■■■□□ 2.33
LINC00475-208ENST00000444476 SCAF1Q9H7N4 1312 aaKnown RBP27.48■■□□□ 1.99
LINC00475-208ENST00000444476 MAPK8IP2Q13387 824 aaPredicted RBP27.34■■□□□ 1.97
LINC00475-208ENST00000444476 DMRT2Q9Y5R5 561 aa27.33■■□□□ 1.97
LINC00475-208ENST00000444476 PPP4R3CPQ6ZMV5 832 aa26.7■■□□□ 1.86
LINC00475-208ENST00000444476 NISCHQ9Y2I1 1504 aa26.66■■□□□ 1.86
LINC00475-208ENST00000444476 CNKSR2Q8WXI2 1034 aa26.29■■□□□ 1.8
LINC00475-208ENST00000444476 HOXD11P31277 338 aaPredicted RBP26.27■■□□□ 1.8
LINC00475-208ENST00000444476 DCAF8L1A6NGE4 600 aa26.23■■□□□ 1.79
LINC00475-208ENST00000444476 RNF216Q9NWF9 866 aaPredicted RBP26.08■■□□□ 1.77
LINC00475-208ENST00000444476 CACNB1Q02641 598 aaPredicted RBP25.98■■□□□ 1.75
LINC00475-208ENST00000444476 NCBP3Q53F19 620 aaKnown RBP25.78■■□□□ 1.72
LINC00475-208ENST00000444476 RNF39Q9H2S5 420 aa25.7■■□□□ 1.7
LINC00475-208ENST00000444476 DNAJC5BQ9UF47 199 aa25.51■■□□□ 1.67
LINC00475-208ENST00000444476 C1QBPQ07021 282 aaKnown RBP25.4■■□□□ 1.66
LINC00475-208ENST00000444476 NPM3O75607 178 aaKnown RBP25.23■■□□□ 1.63
LINC00475-208ENST00000444476 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.08■■□□□ 1.61
LINC00475-208ENST00000444476 KCNA4P22459 653 aa24.59■■□□□ 1.53
LINC00475-208ENST00000444476 U3KPZ7 1027 aaPredicted RBP24.44■■□□□ 1.5
LINC00475-208ENST00000444476 CAPN15O75808 1086 aa24.17■■□□□ 1.46
LINC00475-208ENST00000444476 SPINK5Q9NQ38 1064 aaPredicted RBP24.09■■□□□ 1.45
LINC00475-208ENST00000444476 SLC4A2P04920 1241 aa24.08■■□□□ 1.45
LINC00475-208ENST00000444476 APLP2Q06481 763 aa24.02■■□□□ 1.44
LINC00475-208ENST00000444476 DSG3P32926 999 aa24.01■■□□□ 1.43
LINC00475-208ENST00000444476 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.92■■□□□ 1.42
LINC00475-208ENST00000444476 HNRNPUL2Q1KMD3 747 aaKnown RBP23.92■■□□□ 1.42
LINC00475-208ENST00000444476 ZNF219Q9P2Y4 722 aaPredicted RBP23.78■■□□□ 1.4
LINC00475-208ENST00000444476 CCDC180Q9P1Z9 1646 aa23.77■■□□□ 1.4
LINC00475-208ENST00000444476 TRHP20396 242 aaPredicted RBP23.72■■□□□ 1.39
LINC00475-208ENST00000444476 SAMD1Q6SPF0 538 aaPredicted RBP23.72■■□□□ 1.39
LINC00475-208ENST00000444476 ABCB7O75027 752 aa23.51■■□□□ 1.35
LINC00475-208ENST00000444476 MYCNP04198 464 aaPredicted RBP23.44■■□□□ 1.34
LINC00475-208ENST00000444476 SLC4A1APQ9BWU0 796 aaKnown RBP23.28■■□□□ 1.32
LINC00475-208ENST00000444476 POTEHQ6S545 545 aa23.21■■□□□ 1.31
LINC00475-208ENST00000444476 ABCC9O60706 1549 aa23.11■■□□□ 1.29
LINC00475-208ENST00000444476 FOXD4L1Q9NU39 408 aa23.1■■□□□ 1.29
LINC00475-208ENST00000444476 RBM42Q9BTD8 480 aaKnown RBP23.07■■□□□ 1.28
LINC00475-208ENST00000444476 POLA2Q14181 598 aa23.05■■□□□ 1.28
LINC00475-208ENST00000444476 ZBTB12Q9Y330 459 aaPredicted RBP22.74■■□□□ 1.23
LINC00475-208ENST00000444476 ATF5Q9Y2D1 282 aaPredicted RBP22.72■■□□□ 1.23
LINC00475-208ENST00000444476 ZBTB22O15209 634 aa22.53■■□□□ 1.2
LINC00475-208ENST00000444476 CHRDL2Q6WN34 429 aa22.5■■□□□ 1.19
LINC00475-208ENST00000444476 ATXN8OSP0DMR3 200 aa22.47■■□□□ 1.19
LINC00475-208ENST00000444476 AKT1S1Q96B36 256 aa22.45■■□□□ 1.18
LINC00475-208ENST00000444476 RB1CC1Q8TDY2 1594 aa22.35■■□□□ 1.17
LINC00475-208ENST00000444476 NACADO15069 1562 aa22.34■■□□□ 1.17
LINC00475-208ENST00000444476 OSCARQ8IYS5 282 aa22.29■■□□□ 1.16
LINC00475-208ENST00000444476 MYO15BQ96JP2 1530 aa22.26■■□□□ 1.15
LINC00475-208ENST00000444476 ZCCHC6Q5VYS8 1495 aaKnown RBP22.22■■□□□ 1.15
LINC00475-208ENST00000444476 DCAF8L2P0C7V8 631 aa22.18■■□□□ 1.14
LINC00475-208ENST00000444476 REM2Q8IYK8 340 aaPredicted RBP22.17■■□□□ 1.14
LINC00475-208ENST00000444476 DCAF1Q9Y4B6 1507 aa22.15■■□□□ 1.14
LINC00475-208ENST00000444476 FBLN2P98095 1184 aa22.09■■□□□ 1.13
LINC00475-208ENST00000444476 SPDYE2BA6NHP3 402 aa21.95■■□□□ 1.1
LINC00475-208ENST00000444476 SPDYE6P0CI01 402 aa21.95■■□□□ 1.1
LINC00475-208ENST00000444476 SPDYE2Q495Y8 402 aa21.95■■□□□ 1.1
LINC00475-208ENST00000444476 PITPNM1O00562 1244 aa21.91■■□□□ 1.1
LINC00475-208ENST00000444476 PIP4P2Q8N4L2 257 aa21.9■■□□□ 1.1
LINC00475-208ENST00000444476 FXR2P51116 673 aaKnown RBP eCLIP21.77■■□□□ 1.08
LINC00475-208ENST00000444476 UNC13AQ9UPW8 1703 aa21.76■■□□□ 1.07
LINC00475-208ENST00000444476 SP7Q8TDD2 431 aaPredicted RBP21.71■■□□□ 1.07
LINC00475-208ENST00000444476 MKRN4PQ13434 485 aaPredicted RBP21.69■■□□□ 1.06
LINC00475-208ENST00000444476 ZNF692Q9BU19 519 aaPredicted RBP21.64■■□□□ 1.05
LINC00475-208ENST00000444476 SPDYE1Q8NFV5 336 aaPredicted RBP21.61■■□□□ 1.05
LINC00475-208ENST00000444476 HAX1O00165 279 aa21.6■■□□□ 1.05
LINC00475-208ENST00000444476 BICRAQ9NZM4 1560 aa21.58■■□□□ 1.05
LINC00475-208ENST00000444476 SSUH2Q9Y2M2 353 aa21.57■■□□□ 1.04
LINC00475-208ENST00000444476 SCRIBQ14160 1630 aa21.57■■□□□ 1.04
LINC00475-208ENST00000444476 PABPN1Q86U42 306 aaKnown RBP eCLIP21.56■■□□□ 1.04
LINC00475-208ENST00000444476 SHROOM4Q9ULL8 1493 aa21.55■■□□□ 1.04
LINC00475-208ENST00000444476 CLEC11AQ9Y240 323 aa21.52■■□□□ 1.04
LINC00475-208ENST00000444476 CSRNP3Q8WYN3 585 aa21.44■■□□□ 1.02
LINC00475-208ENST00000444476 PRKAR2AP13861 404 aaKnown RBP21.38■■□□□ 1.01
LINC00475-208ENST00000444476 PRR29P0C7W0 189 aa21.19■□□□□ 0.98
LINC00475-208ENST00000444476 EVX2Q03828 476 aa21.14■□□□□ 0.97
LINC00475-208ENST00000444476 EHMT2Q96KQ7 1210 aa21.11■□□□□ 0.97
LINC00475-208ENST00000444476 C19orf67A6NJJ6 358 aa21.08■□□□□ 0.97
LINC00475-208ENST00000444476 EIF4G1Q04637 1599 aaKnown RBP21.06■□□□□ 0.96
LINC00475-208ENST00000444476 CHADLQ6NUI6 762 aa21.04■□□□□ 0.96
LINC00475-208ENST00000444476 CC2D2AQ9P2K1 1620 aa20.95■□□□□ 0.94
LINC00475-208ENST00000444476 CECR2Q9BXF3 1484 aa20.81■□□□□ 0.92
LINC00475-208ENST00000444476 STAG3Q9UJ98 1225 aa20.81■□□□□ 0.92
LINC00475-208ENST00000444476 GABBR2O75899 941 aa20.79■□□□□ 0.92
LINC00475-208ENST00000444476 FARP1Q9Y4F1 1045 aaPredicted RBP20.79■□□□□ 0.92
LINC00475-208ENST00000444476 SPDYE4A6NLX3 237 aa20.73■□□□□ 0.91
LINC00475-208ENST00000444476 CD44P16070 742 aaKnown RBP20.71■□□□□ 0.91
LINC00475-208ENST00000444476 BAZ1AQ9NRL2 1556 aaPredicted RBP20.71■□□□□ 0.91
LINC00475-208ENST00000444476 SMARCA4P51532 1647 aa20.68■□□□□ 0.9
LINC00475-208ENST00000444476 CLCN6P51797 869 aa20.63■□□□□ 0.89
LINC00475-208ENST00000444476 SMARCA2P51531 1590 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms