RNA–Protein interactions for RNA: ENST00000440903.1

CCDC140-202, Transcript of coiled-coil domain containing 140, humanhuman

APPRIS ALT2 TSL 3

Gene CCDC140, Length 441 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140-202ENST00000440903 AEBP2Q6ZN18 517 aaPredicted RBP16.71■□□□□ 0.27
CCDC140-202ENST00000440903 CHIC1Q5VXU3 224 aa15.71■□□□□ 0.11
CCDC140-202ENST00000440903 SENP3Q9H4L4 574 aaPredicted RBP14.37□□□□□ -0.11
CCDC140-202ENST00000440903 PHF23Q9BUL5 403 aaPredicted RBP14.12□□□□□ -0.15
CCDC140-202ENST00000440903 FOXD1Q16676 465 aa13.4□□□□□ -0.26
CCDC140-202ENST00000440903 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
CCDC140-202ENST00000440903 MSH5O43196 834 aa12.72□□□□□ -0.37
CCDC140-202ENST00000440903 PIAS4Q8N2W9 510 aaPredicted RBP12.5□□□□□ -0.41
CCDC140-202ENST00000440903 PLPPR3Q6T4P5 718 aa12.34□□□□□ -0.43
CCDC140-202ENST00000440903 PPP6R1Q9UPN7 881 aa12.26□□□□□ -0.45
CCDC140-202ENST00000440903 ADRA2BP18089 450 aa12.24□□□□□ -0.45
CCDC140-202ENST00000440903 NISCHQ9Y2I1 1504 aa11.6□□□□□ -0.55
CCDC140-202ENST00000440903 MAPK8IP2Q13387 824 aaPredicted RBP11.33□□□□□ -0.6
CCDC140-202ENST00000440903 DMRT2Q9Y5R5 561 aa11.31□□□□□ -0.6
CCDC140-202ENST00000440903 SCAF1Q9H7N4 1312 aaKnown RBP11.25□□□□□ -0.61
CCDC140-202ENST00000440903 CACNB1Q02641 598 aaPredicted RBP11.15□□□□□ -0.62
CCDC140-202ENST00000440903 DCAF8L1A6NGE4 600 aa11□□□□□ -0.65
CCDC140-202ENST00000440903 RNF39Q9H2S5 420 aa10.77□□□□□ -0.69
CCDC140-202ENST00000440903 PPP4R3CPQ6ZMV5 832 aa10.76□□□□□ -0.69
CCDC140-202ENST00000440903 HOXD11P31277 338 aaPredicted RBP10.75□□□□□ -0.69
CCDC140-202ENST00000440903 CNKSR2Q8WXI2 1034 aa10.64□□□□□ -0.71
CCDC140-202ENST00000440903 C1QBPQ07021 282 aaKnown RBP10.63□□□□□ -0.71
CCDC140-202ENST00000440903 RNF216Q9NWF9 866 aaPredicted RBP10.61□□□□□ -0.71
CCDC140-202ENST00000440903 DNAJC5BQ9UF47 199 aa10.42□□□□□ -0.74
CCDC140-202ENST00000440903 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.35□□□□□ -0.75
CCDC140-202ENST00000440903 CCDC180Q9P1Z9 1646 aa10.31□□□□□ -0.76
CCDC140-202ENST00000440903 NCBP3Q53F19 620 aaKnown RBP10.3□□□□□ -0.76
CCDC140-202ENST00000440903 POTEHQ6S545 545 aa10.11□□□□□ -0.79
CCDC140-202ENST00000440903 NPM3O75607 178 aaKnown RBP10.08□□□□□ -0.8
CCDC140-202ENST00000440903 CAPN15O75808 1086 aa10.06□□□□□ -0.8
CCDC140-202ENST00000440903 U3KPZ7 1027 aaPredicted RBP10.01□□□□□ -0.81
CCDC140-202ENST00000440903 DSG3P32926 999 aa9.99□□□□□ -0.81
CCDC140-202ENST00000440903 SPINK5Q9NQ38 1064 aaPredicted RBP9.99□□□□□ -0.81
CCDC140-202ENST00000440903 ABCC9O60706 1549 aa9.87□□□□□ -0.83
CCDC140-202ENST00000440903 TRHP20396 242 aaPredicted RBP9.81□□□□□ -0.84
CCDC140-202ENST00000440903 APLP2Q06481 763 aa9.79□□□□□ -0.84
CCDC140-202ENST00000440903 ABCB7O75027 752 aa9.78□□□□□ -0.84
CCDC140-202ENST00000440903 ZNF219Q9P2Y4 722 aaPredicted RBP9.75□□□□□ -0.85
CCDC140-202ENST00000440903 ZCCHC6Q5VYS8 1495 aaKnown RBP9.73□□□□□ -0.85
CCDC140-202ENST00000440903 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.68□□□□□ -0.86
CCDC140-202ENST00000440903 SLC4A2P04920 1241 aa9.68□□□□□ -0.86
CCDC140-202ENST00000440903 HNRNPUL2Q1KMD3 747 aaKnown RBP9.68□□□□□ -0.86
CCDC140-202ENST00000440903 DCAF1Q9Y4B6 1507 aa9.65□□□□□ -0.86
CCDC140-202ENST00000440903 NACADO15069 1562 aa9.64□□□□□ -0.87
CCDC140-202ENST00000440903 DCAF8L2P0C7V8 631 aa9.63□□□□□ -0.87
CCDC140-202ENST00000440903 RB1CC1Q8TDY2 1594 aa9.63□□□□□ -0.87
CCDC140-202ENST00000440903 MYO15BQ96JP2 1530 aa9.62□□□□□ -0.87
CCDC140-202ENST00000440903 KCNA4P22459 653 aa9.6□□□□□ -0.87
CCDC140-202ENST00000440903 SAMD1Q6SPF0 538 aaPredicted RBP9.6□□□□□ -0.87
CCDC140-202ENST00000440903 RBM42Q9BTD8 480 aaKnown RBP9.6□□□□□ -0.87
CCDC140-202ENST00000440903 CHRDL2Q6WN34 429 aa9.5□□□□□ -0.89
CCDC140-202ENST00000440903 POLA2Q14181 598 aa9.43□□□□□ -0.9
CCDC140-202ENST00000440903 SCRIBQ14160 1630 aa9.39□□□□□ -0.91
CCDC140-202ENST00000440903 MYCNP04198 464 aaPredicted RBP9.37□□□□□ -0.91
CCDC140-202ENST00000440903 SP7Q8TDD2 431 aaPredicted RBP9.31□□□□□ -0.92
CCDC140-202ENST00000440903 UNC13AQ9UPW8 1703 aa9.31□□□□□ -0.92
CCDC140-202ENST00000440903 SHROOM4Q9ULL8 1493 aa9.29□□□□□ -0.92
CCDC140-202ENST00000440903 AKT1S1Q96B36 256 aa9.27□□□□□ -0.93
CCDC140-202ENST00000440903 ZBTB12Q9Y330 459 aaPredicted RBP9.24□□□□□ -0.93
CCDC140-202ENST00000440903 BICRAQ9NZM4 1560 aa9.21□□□□□ -0.93
CCDC140-202ENST00000440903 PABPN1Q86U42 306 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC140-202ENST00000440903 REM2Q8IYK8 340 aaPredicted RBP9.18□□□□□ -0.94
CCDC140-202ENST00000440903 PIP4P2Q8N4L2 257 aa9.18□□□□□ -0.94
CCDC140-202ENST00000440903 HAX1O00165 279 aa9.17□□□□□ -0.94
CCDC140-202ENST00000440903 OSCARQ8IYS5 282 aa9.15□□□□□ -0.94
CCDC140-202ENST00000440903 ATF5Q9Y2D1 282 aaPredicted RBP9.13□□□□□ -0.95
CCDC140-202ENST00000440903 PITPNM1O00562 1244 aa9.1□□□□□ -0.95
CCDC140-202ENST00000440903 FOXD4L1Q9NU39 408 aa9.09□□□□□ -0.95
CCDC140-202ENST00000440903 FXR2P51116 673 aaKnown RBP eCLIP9.05□□□□□ -0.96
CCDC140-202ENST00000440903 BAZ1AQ9NRL2 1556 aaPredicted RBP9.04□□□□□ -0.96
CCDC140-202ENST00000440903 SLC4A1APQ9BWU0 796 aaKnown RBP9.04□□□□□ -0.96
CCDC140-202ENST00000440903 EIF4G1Q04637 1599 aaKnown RBP9.03□□□□□ -0.96
CCDC140-202ENST00000440903 SMARCA4P51532 1647 aa8.99□□□□□ -0.97
CCDC140-202ENST00000440903 CECR2Q9BXF3 1484 aa8.96□□□□□ -0.97
CCDC140-202ENST00000440903 SMARCA2P51531 1590 aa8.94□□□□□ -0.98
CCDC140-202ENST00000440903 EVX2Q03828 476 aa8.93□□□□□ -0.98
CCDC140-202ENST00000440903 CC2D2AQ9P2K1 1620 aa8.93□□□□□ -0.98
CCDC140-202ENST00000440903 MROH2BQ7Z745 1585 aa8.92□□□□□ -0.98
CCDC140-202ENST00000440903 SPDYE2BA6NHP3 402 aa8.9□□□□□ -0.98
CCDC140-202ENST00000440903 SPDYE6P0CI01 402 aa8.9□□□□□ -0.98
CCDC140-202ENST00000440903 SPDYE2Q495Y8 402 aa8.9□□□□□ -0.98
CCDC140-202ENST00000440903 CLEC11AQ9Y240 323 aa8.9□□□□□ -0.98
CCDC140-202ENST00000440903 PRKAR2AP13861 404 aaKnown RBP8.89□□□□□ -0.99
CCDC140-202ENST00000440903 FBLN2P98095 1184 aa8.89□□□□□ -0.99
CCDC140-202ENST00000440903 PEG3Q9GZU2 1588 aa8.89□□□□□ -0.99
CCDC140-202ENST00000440903 RSF1Q96T23 1441 aaPredicted RBP8.88□□□□□ -0.99
CCDC140-202ENST00000440903 HMGXB3Q12766 1538 aa8.87□□□□□ -0.99
CCDC140-202ENST00000440903 BAZ1BQ9UIG0 1483 aaKnown RBP8.87□□□□□ -0.99
CCDC140-202ENST00000440903 ATAD2BQ9ULI0 1458 aa8.87□□□□□ -0.99
CCDC140-202ENST00000440903 SPDYE1Q8NFV5 336 aaPredicted RBP8.85□□□□□ -0.99
CCDC140-202ENST00000440903 NCAPD3P42695 1498 aa8.84□□□□□ -0.99
CCDC140-202ENST00000440903 WIZO95785 1651 aa8.84□□□□□ -0.99
CCDC140-202ENST00000440903 TOP2AP11388 1531 aaKnown RBP8.82□□□□□ -1
CCDC140-202ENST00000440903 SUPT5HO00267 1087 aaKnown RBP8.81□□□□□ -1
CCDC140-202ENST00000440903 ATXN8OSP0DMR3 200 aa8.81□□□□□ -1
CCDC140-202ENST00000440903 C19orf67A6NJJ6 358 aa8.78□□□□□ -1
CCDC140-202ENST00000440903 ZBTB22O15209 634 aa8.78□□□□□ -1
CCDC140-202ENST00000440903 ZNF692Q9BU19 519 aaPredicted RBP8.77□□□□□ -1.01
CCDC140-202ENST00000440903 GABBR2O75899 941 aa8.76□□□□□ -1.01
CCDC140-202ENST00000440903 LHX8Q68G74 356 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms