RNA–Protein interactions for RNA: ENST00000438547.6

SEMA4D-211, Transcript of semaphorin 4D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEMA4D, Length 4,824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-211ENST00000438547 DCAF8L2P0C7V8 631 aa19.06■□□□□ 0.64
SEMA4D-211ENST00000438547 NISCHQ9Y2I1 1504 aa18.7■□□□□ 0.58
SEMA4D-211ENST00000438547 SUPT5HO00267 1087 aaKnown RBP18.54■□□□□ 0.56
SEMA4D-211ENST00000438547 SHROOM4Q9ULL8 1493 aa18.16■□□□□ 0.5
SEMA4D-211ENST00000438547 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
SEMA4D-211ENST00000438547 PCGF6Q9BYE7 350 aa17.62■□□□□ 0.41
SEMA4D-211ENST00000438547 PELP1Q8IZL8 1130 aaKnown RBP17.52■□□□□ 0.4
SEMA4D-211ENST00000438547 FAM9AQ8IZU1 332 aaPredicted RBP17.44■□□□□ 0.38
SEMA4D-211ENST00000438547 APLP2Q06481 763 aa17.37■□□□□ 0.37
SEMA4D-211ENST00000438547 ZEB1P37275 1124 aaPredicted RBP17.27■□□□□ 0.36
SEMA4D-211ENST00000438547 TTBK1Q5TCY1 1321 aaPredicted RBP17.22■□□□□ 0.35
SEMA4D-211ENST00000438547 CENPBP07199 599 aaPredicted RBP17.18■□□□□ 0.34
SEMA4D-211ENST00000438547 TRIM41Q8WV44 630 aa17.15■□□□□ 0.34
SEMA4D-211ENST00000438547 CCER1Q8TC90 406 aaPredicted RBP17.11■□□□□ 0.33
SEMA4D-211ENST00000438547 MYT1Q01538 1121 aa17.01■□□□□ 0.31
SEMA4D-211ENST00000438547 HRCP23327 699 aa16.94■□□□□ 0.3
SEMA4D-211ENST00000438547 RANGAP1P46060 587 aaPredicted RBP16.9■□□□□ 0.3
SEMA4D-211ENST00000438547 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
SEMA4D-211ENST00000438547 UBTFP17480 764 aaKnown RBP16.84■□□□□ 0.29
SEMA4D-211ENST00000438547 YTHDC1Q96MU7 727 aaKnown RBP16.77■□□□□ 0.28
SEMA4D-211ENST00000438547 ERICH6Q7L0X2 663 aa16.77■□□□□ 0.28
SEMA4D-211ENST00000438547 PPARGC1BQ86YN6 1023 aaKnown RBP16.77■□□□□ 0.28
SEMA4D-211ENST00000438547 CHIC1Q5VXU3 224 aa16.75■□□□□ 0.27
SEMA4D-211ENST00000438547 LOC105371045A0A1W2PR82 267 aa16.7■□□□□ 0.26
SEMA4D-211ENST00000438547 ATP1B4Q9UN42 357 aaPredicted RBP16.65■□□□□ 0.26
SEMA4D-211ENST00000438547 NEFLP07196 543 aa16.63■□□□□ 0.25
SEMA4D-211ENST00000438547 HNRNPUL2Q1KMD3 747 aaKnown RBP16.36■□□□□ 0.21
SEMA4D-211ENST00000438547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.33■□□□□ 0.21
SEMA4D-211ENST00000438547 ITGAEP38570 1179 aa16.31■□□□□ 0.2
SEMA4D-211ENST00000438547 DIEXFQ68CQ4 756 aaKnown RBP16.3■□□□□ 0.2
SEMA4D-211ENST00000438547 GTF3C3Q9Y5Q9 886 aa16.08■□□□□ 0.16
SEMA4D-211ENST00000438547 POLR3GLQ9BT43 218 aa16.07■□□□□ 0.16
SEMA4D-211ENST00000438547 DAXXQ9UER7 740 aaPredicted RBP16.01■□□□□ 0.15
SEMA4D-211ENST00000438547 CNGB1Q14028 1251 aaPredicted RBP15.97■□□□□ 0.15
SEMA4D-211ENST00000438547 ZNF316A6NFI3 1004 aaPredicted RBP15.93■□□□□ 0.14
SEMA4D-211ENST00000438547 ACIN1Q9UKV3 1341 aaKnown RBP15.91■□□□□ 0.14
SEMA4D-211ENST00000438547 FAM50AQ14320 339 aaKnown RBP15.88■□□□□ 0.13
SEMA4D-211ENST00000438547 BCANQ96GW7 911 aa15.85■□□□□ 0.13
SEMA4D-211ENST00000438547 NEUROD1Q13562 356 aa15.84■□□□□ 0.13
SEMA4D-211ENST00000438547 RTL5Q5HYW3 569 aaPredicted RBP15.82■□□□□ 0.12
SEMA4D-211ENST00000438547 MYT1LQ9UL68 1186 aa15.77■□□□□ 0.12
SEMA4D-211ENST00000438547 ANP32CO43423 234 aa15.77■□□□□ 0.12
SEMA4D-211ENST00000438547 TRIM52Q96A61 297 aa15.75■□□□□ 0.11
SEMA4D-211ENST00000438547 DCAF1Q9Y4B6 1507 aa15.73■□□□□ 0.11
SEMA4D-211ENST00000438547 CSRNP3Q8WYN3 585 aa15.73■□□□□ 0.11
SEMA4D-211ENST00000438547 PABPN1Q86U42 306 aaKnown RBP eCLIP15.72■□□□□ 0.11
SEMA4D-211ENST00000438547 ABCC9O60706 1549 aa15.7■□□□□ 0.1
SEMA4D-211ENST00000438547 CDK11AQ9UQ88 783 aaPredicted RBP15.69■□□□□ 0.1
SEMA4D-211ENST00000438547 CLSPNQ9HAW4 1339 aa15.67■□□□□ 0.1
SEMA4D-211ENST00000438547 SLC4A1APQ9BWU0 796 aaKnown RBP15.59■□□□□ 0.09
SEMA4D-211ENST00000438547 ZNF326Q5BKZ1 582 aaKnown RBP15.56■□□□□ 0.08
SEMA4D-211ENST00000438547 ZCCHC6Q5VYS8 1495 aaKnown RBP15.53■□□□□ 0.08
SEMA4D-211ENST00000438547 SCAF1Q9H7N4 1312 aaKnown RBP15.51■□□□□ 0.07
SEMA4D-211ENST00000438547 P3H3Q8IVL6 736 aa15.49■□□□□ 0.07
SEMA4D-211ENST00000438547 FKBP8Q14318 412 aa15.48■□□□□ 0.07
SEMA4D-211ENST00000438547 MYO15BQ96JP2 1530 aa15.42■□□□□ 0.06
SEMA4D-211ENST00000438547 DDX10Q13206 875 aaKnown RBP15.4■□□□□ 0.06
SEMA4D-211ENST00000438547 ANP32AP39687 249 aaKnown RBP15.4■□□□□ 0.06
SEMA4D-211ENST00000438547 MIER1Q8N108 512 aa15.37■□□□□ 0.05
SEMA4D-211ENST00000438547 HNRNPUQ00839 825 aaKnown RBP eCLIP15.36■□□□□ 0.05
SEMA4D-211ENST00000438547 TONSLQ96HA7 1378 aa15.35■□□□□ 0.05
SEMA4D-211ENST00000438547 SCRIBQ14160 1630 aa15.33■□□□□ 0.04
SEMA4D-211ENST00000438547 ARID3CA6NKF2 412 aa15.32■□□□□ 0.04
SEMA4D-211ENST00000438547 NPM2Q86SE8 214 aaKnown RBP15.29■□□□□ 0.04
SEMA4D-211ENST00000438547 CANXP27824 592 aaKnown RBP15.29■□□□□ 0.04
SEMA4D-211ENST00000438547 FBLN2P98095 1184 aa15.27■□□□□ 0.03
SEMA4D-211ENST00000438547 FAM9BQ8IZU0 186 aa15.26■□□□□ 0.03
SEMA4D-211ENST00000438547 ZBTB47Q9UFB7 747 aaPredicted RBP15.24■□□□□ 0.03
SEMA4D-211ENST00000438547 ZNF777Q9ULD5 760 aaPredicted RBP15.24■□□□□ 0.03
SEMA4D-211ENST00000438547 EIF5BO60841 1220 aaKnown RBP15.18■□□□□ 0.02
SEMA4D-211ENST00000438547 CLIP1P30622 1438 aa15.18■□□□□ 0.02
SEMA4D-211ENST00000438547 CCDC136Q96JN2 1154 aa15.16■□□□□ 0.02
SEMA4D-211ENST00000438547 CCDC180Q9P1Z9 1646 aa15.15■□□□□ 0.02
SEMA4D-211ENST00000438547 HIRIP3Q9BW71 556 aaPredicted RBP15.14■□□□□ 0.01
SEMA4D-211ENST00000438547 BCL11AQ9H165 835 aa15.14■□□□□ 0.01
SEMA4D-211ENST00000438547 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
SEMA4D-211ENST00000438547 MRS2Q9HD23 443 aa15.13■□□□□ 0.01
SEMA4D-211ENST00000438547 CHIC2Q9UKJ5 165 aa15.13■□□□□ 0.01
SEMA4D-211ENST00000438547 CEP162Q5TB80 1403 aa15.13■□□□□ 0.01
SEMA4D-211ENST00000438547 TMC1Q8TDI8 760 aa15.12■□□□□ 0.01
SEMA4D-211ENST00000438547 NEFMP07197 916 aa15.12■□□□□ 0.01
SEMA4D-211ENST00000438547 SALL2Q9Y467 1007 aaPredicted RBP15.12■□□□□ 0.01
SEMA4D-211ENST00000438547 IRX6P78412 446 aaPredicted RBP15.1■□□□□ 0.01
SEMA4D-211ENST00000438547 NBR1Q14596 966 aa15.09■□□□□ 0.01
SEMA4D-211ENST00000438547 EEA1Q15075 1411 aa15.08■□□□□ 0.01
SEMA4D-211ENST00000438547 GOLGA3Q08378 1498 aa15.05■□□□□ 0
SEMA4D-211ENST00000438547 MTUS2Q5JR59 1369 aa15.03■□□□□ -0
SEMA4D-211ENST00000438547 EIF4G2P78344 907 aaKnown RBP eCLIP15.03■□□□□ -0
SEMA4D-211ENST00000438547 UPF2Q9HAU5 1272 aaKnown RBP15.03■□□□□ -0
SEMA4D-211ENST00000438547 TNIKQ9UKE5 1360 aa15.02■□□□□ -0
SEMA4D-211ENST00000438547 ANP32EQ9BTT0 268 aa15□□□□□ -0.01
SEMA4D-211ENST00000438547 SLC24A1O60721 1099 aa14.99□□□□□ -0.01
SEMA4D-211ENST00000438547 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.98□□□□□ -0.01
SEMA4D-211ENST00000438547 HSP90AA1P07900 732 aaKnown RBP14.98□□□□□ -0.01
SEMA4D-211ENST00000438547 KDM2AQ9Y2K7 1162 aa14.96□□□□□ -0.01
SEMA4D-211ENST00000438547 ANP32BQ92688 251 aaKnown RBP14.96□□□□□ -0.01
SEMA4D-211ENST00000438547 RRP7BPQ9NSQ0 103 aa14.95□□□□□ -0.02
SEMA4D-211ENST00000438547 WDR43Q15061 677 aaKnown RBP eCLIP14.93□□□□□ -0.02
SEMA4D-211ENST00000438547 SUPT16HQ9Y5B9 1047 aaKnown RBP14.93□□□□□ -0.02
SEMA4D-211ENST00000438547 WRNQ14191 1432 aaPredicted RBP eCLIP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms