RNA–Protein interactions for RNA: ENST00000425141.5

SLC4A3-207, Transcript of solute carrier family 4 member 3, humanhuman

TSL 1 (best)

Gene SLC4A3, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC4A3-207ENST00000425141 NISCHQ9Y2I1 1504 aa21.63■■□□□ 1.05
SLC4A3-207ENST00000425141 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
SLC4A3-207ENST00000425141 SUPT5HO00267 1087 aaKnown RBP19.48■□□□□ 0.71
SLC4A3-207ENST00000425141 SHROOM4Q9ULL8 1493 aa19.36■□□□□ 0.69
SLC4A3-207ENST00000425141 EHMT2Q96KQ7 1210 aa19.04■□□□□ 0.64
SLC4A3-207ENST00000425141 PCGF6Q9BYE7 350 aa18.5■□□□□ 0.55
SLC4A3-207ENST00000425141 FAM9AQ8IZU1 332 aaPredicted RBP18.41■□□□□ 0.54
SLC4A3-207ENST00000425141 TTBK1Q5TCY1 1321 aaPredicted RBP18.34■□□□□ 0.53
SLC4A3-207ENST00000425141 ABCC9O60706 1549 aa18.2■□□□□ 0.5
SLC4A3-207ENST00000425141 CCDC180Q9P1Z9 1646 aa18.11■□□□□ 0.49
SLC4A3-207ENST00000425141 ZCCHC6Q5VYS8 1495 aaKnown RBP18.06■□□□□ 0.48
SLC4A3-207ENST00000425141 PPARGC1BQ86YN6 1023 aaKnown RBP18.03■□□□□ 0.48
SLC4A3-207ENST00000425141 LOC105371045A0A1W2PR82 267 aa17.9■□□□□ 0.46
SLC4A3-207ENST00000425141 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
SLC4A3-207ENST00000425141 HRCP23327 699 aa17.74■□□□□ 0.43
SLC4A3-207ENST00000425141 PABPN1Q86U42 306 aaKnown RBP eCLIP17.67■□□□□ 0.42
SLC4A3-207ENST00000425141 TRIM41Q8WV44 630 aa17.66■□□□□ 0.42
SLC4A3-207ENST00000425141 PELP1Q8IZL8 1130 aaKnown RBP17.65■□□□□ 0.42
SLC4A3-207ENST00000425141 CHIC1Q5VXU3 224 aa17.63■□□□□ 0.41
SLC4A3-207ENST00000425141 SCRIBQ14160 1630 aa17.59■□□□□ 0.41
SLC4A3-207ENST00000425141 CCER1Q8TC90 406 aaPredicted RBP17.53■□□□□ 0.4
SLC4A3-207ENST00000425141 YTHDC1Q96MU7 727 aaKnown RBP17.51■□□□□ 0.39
SLC4A3-207ENST00000425141 DCAF1Q9Y4B6 1507 aa17.37■□□□□ 0.37
SLC4A3-207ENST00000425141 UBTFP17480 764 aaKnown RBP17.31■□□□□ 0.36
SLC4A3-207ENST00000425141 APLP2Q06481 763 aa17.31■□□□□ 0.36
SLC4A3-207ENST00000425141 TRIM26Q12899 539 aaPredicted RBP17.28■□□□□ 0.36
SLC4A3-207ENST00000425141 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.24■□□□□ 0.35
SLC4A3-207ENST00000425141 NACADO15069 1562 aa17.24■□□□□ 0.35
SLC4A3-207ENST00000425141 RB1CC1Q8TDY2 1594 aa17.2■□□□□ 0.34
SLC4A3-207ENST00000425141 ATP1B4Q9UN42 357 aaPredicted RBP17.16■□□□□ 0.34
SLC4A3-207ENST00000425141 RSF1Q96T23 1441 aaPredicted RBP17.14■□□□□ 0.33
SLC4A3-207ENST00000425141 ZEB1P37275 1124 aaPredicted RBP17.1■□□□□ 0.33
SLC4A3-207ENST00000425141 HNRNPUL2Q1KMD3 747 aaKnown RBP17.09■□□□□ 0.33
SLC4A3-207ENST00000425141 CENPBP07199 599 aaPredicted RBP17.08■□□□□ 0.33
SLC4A3-207ENST00000425141 MYT1Q01538 1121 aa17.08■□□□□ 0.33
SLC4A3-207ENST00000425141 CECR2Q9BXF3 1484 aa17.07■□□□□ 0.32
SLC4A3-207ENST00000425141 ITGAEP38570 1179 aa17.05■□□□□ 0.32
SLC4A3-207ENST00000425141 MYO15BQ96JP2 1530 aa16.96■□□□□ 0.31
SLC4A3-207ENST00000425141 SCAF1Q9H7N4 1312 aaKnown RBP16.87■□□□□ 0.29
SLC4A3-207ENST00000425141 CNGB1Q14028 1251 aaPredicted RBP16.86■□□□□ 0.29
SLC4A3-207ENST00000425141 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
SLC4A3-207ENST00000425141 DIEXFQ68CQ4 756 aaKnown RBP16.8■□□□□ 0.28
SLC4A3-207ENST00000425141 BAZ1AQ9NRL2 1556 aaPredicted RBP16.76■□□□□ 0.27
SLC4A3-207ENST00000425141 GTF3C3Q9Y5Q9 886 aa16.74■□□□□ 0.27
SLC4A3-207ENST00000425141 WIZO95785 1651 aa16.63■□□□□ 0.25
SLC4A3-207ENST00000425141 CSRNP3Q8WYN3 585 aa16.62■□□□□ 0.25
SLC4A3-207ENST00000425141 BCANQ96GW7 911 aa16.6■□□□□ 0.25
SLC4A3-207ENST00000425141 BAZ1BQ9UIG0 1483 aaKnown RBP16.58■□□□□ 0.25
SLC4A3-207ENST00000425141 POLR3GLQ9BT43 218 aa16.55■□□□□ 0.24
SLC4A3-207ENST00000425141 ACIN1Q9UKV3 1341 aaKnown RBP16.54■□□□□ 0.24
SLC4A3-207ENST00000425141 UNC13AQ9UPW8 1703 aa16.52■□□□□ 0.23
SLC4A3-207ENST00000425141 CCDC88BA6NC98 1476 aa16.52■□□□□ 0.23
SLC4A3-207ENST00000425141 ERICH6Q7L0X2 663 aa16.5■□□□□ 0.23
SLC4A3-207ENST00000425141 NEUROD1Q13562 356 aa16.47■□□□□ 0.23
SLC4A3-207ENST00000425141 NEFLP07196 543 aa16.46■□□□□ 0.22
SLC4A3-207ENST00000425141 SMARCA4P51532 1647 aa16.44■□□□□ 0.22
SLC4A3-207ENST00000425141 WRNQ14191 1432 aaPredicted RBP eCLIP16.42■□□□□ 0.22
SLC4A3-207ENST00000425141 ABCC8Q09428 1581 aa16.39■□□□□ 0.21
SLC4A3-207ENST00000425141 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.21
SLC4A3-207ENST00000425141 ATAD2BQ9ULI0 1458 aa16.36■□□□□ 0.21
SLC4A3-207ENST00000425141 FAM50AQ14320 339 aaKnown RBP16.36■□□□□ 0.21
SLC4A3-207ENST00000425141 P3H3Q8IVL6 736 aa16.33■□□□□ 0.2
SLC4A3-207ENST00000425141 SOGA1O94964 1423 aa16.32■□□□□ 0.2
SLC4A3-207ENST00000425141 SMARCA2P51531 1590 aa16.31■□□□□ 0.2
SLC4A3-207ENST00000425141 ZNF316A6NFI3 1004 aaPredicted RBP16.3■□□□□ 0.2
SLC4A3-207ENST00000425141 ARID3CA6NKF2 412 aa16.28■□□□□ 0.2
SLC4A3-207ENST00000425141 BICRAQ9NZM4 1560 aa16.27■□□□□ 0.19
SLC4A3-207ENST00000425141 HIRIP3Q9BW71 556 aaPredicted RBP16.22■□□□□ 0.19
SLC4A3-207ENST00000425141 MIER1Q8N108 512 aa16.19■□□□□ 0.18
SLC4A3-207ENST00000425141 EEA1Q15075 1411 aa16.17■□□□□ 0.18
SLC4A3-207ENST00000425141 FBLN2P98095 1184 aa16.17■□□□□ 0.18
SLC4A3-207ENST00000425141 CEP162Q5TB80 1403 aa16.17■□□□□ 0.18
SLC4A3-207ENST00000425141 GOLGA3Q08378 1498 aa16.12■□□□□ 0.17
SLC4A3-207ENST00000425141 CLIP1P30622 1438 aa16.12■□□□□ 0.17
SLC4A3-207ENST00000425141 ZNF326Q5BKZ1 582 aaKnown RBP16.11■□□□□ 0.17
SLC4A3-207ENST00000425141 EIF4G1Q04637 1599 aaKnown RBP16.1■□□□□ 0.17
SLC4A3-207ENST00000425141 SENP3-EIF4A1A0A087X0R7 540 aa16.1■□□□□ 0.17
SLC4A3-207ENST00000425141 RUSC2Q8N2Y8 1516 aa16.1■□□□□ 0.17
SLC4A3-207ENST00000425141 TNIKQ9UKE5 1360 aa16.08■□□□□ 0.17
SLC4A3-207ENST00000425141 TRIM52Q96A61 297 aa16.08■□□□□ 0.16
SLC4A3-207ENST00000425141 KIF27Q86VH2 1401 aa16.07■□□□□ 0.16
SLC4A3-207ENST00000425141 DDX10Q13206 875 aaKnown RBP16.05■□□□□ 0.16
SLC4A3-207ENST00000425141 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
SLC4A3-207ENST00000425141 CADPSQ9ULU8 1353 aa16.04■□□□□ 0.16
SLC4A3-207ENST00000425141 NCAPD3P42695 1498 aa16.03■□□□□ 0.16
SLC4A3-207ENST00000425141 CUX2O14529 1486 aa16■□□□□ 0.15
SLC4A3-207ENST00000425141 IRX6P78412 446 aaPredicted RBP15.98■□□□□ 0.15
SLC4A3-207ENST00000425141 FKBP8Q14318 412 aa15.98■□□□□ 0.15
SLC4A3-207ENST00000425141 DNAJC5BQ9UF47 199 aa15.97■□□□□ 0.15
SLC4A3-207ENST00000425141 MYT1LQ9UL68 1186 aa15.95■□□□□ 0.14
SLC4A3-207ENST00000425141 ANP32CO43423 234 aa15.9■□□□□ 0.14
SLC4A3-207ENST00000425141 CARMIL1Q5VZK9 1371 aa15.9■□□□□ 0.14
SLC4A3-207ENST00000425141 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
SLC4A3-207ENST00000425141 TDRD9Q8NDG6 1382 aaKnown RBP15.88■□□□□ 0.13
SLC4A3-207ENST00000425141 BCL11AQ9H165 835 aa15.87■□□□□ 0.13
SLC4A3-207ENST00000425141 SALL2Q9Y467 1007 aaPredicted RBP15.86■□□□□ 0.13
SLC4A3-207ENST00000425141 CHIC2Q9UKJ5 165 aa15.85■□□□□ 0.13
SLC4A3-207ENST00000425141 FANCD2Q9BXW9 1451 aa15.84■□□□□ 0.13
SLC4A3-207ENST00000425141 SLC4A1APQ9BWU0 796 aaKnown RBP15.83■□□□□ 0.13
SLC4A3-207ENST00000425141 PDS5BQ9NTI5 1447 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms