RNA–Protein interactions for RNA: ENST00000419890.3

TVP23C-202, Transcript of trans-golgi network vesicle protein 23 homolog C, humanhuman

TSL 5

Gene TVP23C, Length 537 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23C-202ENST00000419890 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
TVP23C-202ENST00000419890 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
TVP23C-202ENST00000419890 SENP3Q9H4L4 574 aaPredicted RBP21.04■□□□□ 0.96
TVP23C-202ENST00000419890 PHF23Q9BUL5 403 aaPredicted RBP20.76■□□□□ 0.91
TVP23C-202ENST00000419890 FOXD1Q16676 465 aa19.71■□□□□ 0.75
TVP23C-202ENST00000419890 POTEDQ86YR6 584 aa18.51■□□□□ 0.55
TVP23C-202ENST00000419890 MSH5O43196 834 aa18.46■□□□□ 0.55
TVP23C-202ENST00000419890 PLPPR3Q6T4P5 718 aa18.37■□□□□ 0.53
TVP23C-202ENST00000419890 PIAS4Q8N2W9 510 aaPredicted RBP18.29■□□□□ 0.52
TVP23C-202ENST00000419890 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
TVP23C-202ENST00000419890 ADRA2BP18089 450 aa18.15■□□□□ 0.5
TVP23C-202ENST00000419890 MAPK8IP2Q13387 824 aaPredicted RBP16.76■□□□□ 0.27
TVP23C-202ENST00000419890 DMRT2Q9Y5R5 561 aa16.68■□□□□ 0.26
TVP23C-202ENST00000419890 SCAF1Q9H7N4 1312 aaKnown RBP16.52■□□□□ 0.24
TVP23C-202ENST00000419890 PPP4R3CPQ6ZMV5 832 aa16.1■□□□□ 0.17
TVP23C-202ENST00000419890 HOXD11P31277 338 aaPredicted RBP15.99■□□□□ 0.15
TVP23C-202ENST00000419890 CACNB1Q02641 598 aaPredicted RBP15.98■□□□□ 0.15
TVP23C-202ENST00000419890 DCAF8L1A6NGE4 600 aa15.91■□□□□ 0.14
TVP23C-202ENST00000419890 CNKSR2Q8WXI2 1034 aa15.84■□□□□ 0.13
TVP23C-202ENST00000419890 RNF39Q9H2S5 420 aa15.79■□□□□ 0.12
TVP23C-202ENST00000419890 RNF216Q9NWF9 866 aaPredicted RBP15.77■□□□□ 0.12
TVP23C-202ENST00000419890 C1QBPQ07021 282 aaKnown RBP15.5■□□□□ 0.07
TVP23C-202ENST00000419890 DNAJC5BQ9UF47 199 aa15.48■□□□□ 0.07
TVP23C-202ENST00000419890 NCBP3Q53F19 620 aaKnown RBP15.33■□□□□ 0.04
TVP23C-202ENST00000419890 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
TVP23C-202ENST00000419890 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.14■□□□□ 0.011e-7■□□□□ 8.3
TVP23C-202ENST00000419890 U3KPZ7 1027 aaPredicted RBP14.88□□□□□ -0.03
TVP23C-202ENST00000419890 SPINK5Q9NQ38 1064 aaPredicted RBP14.74□□□□□ -0.05
TVP23C-202ENST00000419890 DSG3P32926 999 aa14.7□□□□□ -0.06
TVP23C-202ENST00000419890 KCNA4P22459 653 aa14.69□□□□□ -0.06
TVP23C-202ENST00000419890 CAPN15O75808 1086 aa14.65□□□□□ -0.06
TVP23C-202ENST00000419890 SLC4A2P04920 1241 aa14.62□□□□□ -0.07
TVP23C-202ENST00000419890 NISCHQ9Y2I1 1504 aa14.53□□□□□ -0.08
TVP23C-202ENST00000419890 POTEHQ6S545 545 aa14.42□□□□□ -0.1
TVP23C-202ENST00000419890 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
TVP23C-202ENST00000419890 ABCB7O75027 752 aa14.32□□□□□ -0.12
TVP23C-202ENST00000419890 ZNF219Q9P2Y4 722 aaPredicted RBP14.32□□□□□ -0.12
TVP23C-202ENST00000419890 APLP2Q06481 763 aa14.31□□□□□ -0.12
TVP23C-202ENST00000419890 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.27□□□□□ -0.13
TVP23C-202ENST00000419890 HNRNPUL2Q1KMD3 747 aaKnown RBP14.27□□□□□ -0.13
TVP23C-202ENST00000419890 SAMD1Q6SPF0 538 aaPredicted RBP14.2□□□□□ -0.14
TVP23C-202ENST00000419890 MYCNP04198 464 aaPredicted RBP14.02□□□□□ -0.17
TVP23C-202ENST00000419890 POLA2Q14181 598 aa13.95□□□□□ -0.18
TVP23C-202ENST00000419890 RBM42Q9BTD8 480 aaKnown RBP13.95□□□□□ -0.18
TVP23C-202ENST00000419890 ATF5Q9Y2D1 282 aaPredicted RBP13.8□□□□□ -0.2
TVP23C-202ENST00000419890 CHRDL2Q6WN34 429 aa13.79□□□□□ -0.2
TVP23C-202ENST00000419890 SLC4A1APQ9BWU0 796 aaKnown RBP13.77□□□□□ -0.21
TVP23C-202ENST00000419890 FOXD4L1Q9NU39 408 aa13.74□□□□□ -0.21
TVP23C-202ENST00000419890 AKT1S1Q96B36 256 aa13.61□□□□□ -0.23
TVP23C-202ENST00000419890 ZBTB12Q9Y330 459 aaPredicted RBP13.59□□□□□ -0.23
TVP23C-202ENST00000419890 ZBTB22O15209 634 aa13.55□□□□□ -0.24
TVP23C-202ENST00000419890 OSCARQ8IYS5 282 aa13.52□□□□□ -0.25
TVP23C-202ENST00000419890 REM2Q8IYK8 340 aaPredicted RBP13.51□□□□□ -0.25
TVP23C-202ENST00000419890 PIP4P2Q8N4L2 257 aa13.43□□□□□ -0.26
TVP23C-202ENST00000419890 SP7Q8TDD2 431 aaPredicted RBP13.4□□□□□ -0.26
TVP23C-202ENST00000419890 PITPNM1O00562 1244 aa13.38□□□□□ -0.27
TVP23C-202ENST00000419890 ATXN8OSP0DMR3 200 aa13.35□□□□□ -0.27
TVP23C-202ENST00000419890 FXR2P51116 673 aaKnown RBP eCLIP13.32□□□□□ -0.28
TVP23C-202ENST00000419890 HAX1O00165 279 aa13.2□□□□□ -0.3
TVP23C-202ENST00000419890 SPDYE2BA6NHP3 402 aa13.19□□□□□ -0.3
TVP23C-202ENST00000419890 SPDYE6P0CI01 402 aa13.19□□□□□ -0.3
TVP23C-202ENST00000419890 SPDYE2Q495Y8 402 aa13.19□□□□□ -0.3
TVP23C-202ENST00000419890 FBLN2P98095 1184 aa13.15□□□□□ -0.3
TVP23C-202ENST00000419890 MKRN4PQ13434 485 aaPredicted RBP13.15□□□□□ -0.3
TVP23C-202ENST00000419890 EVX2Q03828 476 aa13.12□□□□□ -0.31
TVP23C-202ENST00000419890 SSUH2Q9Y2M2 353 aa13.04□□□□□ -0.32
TVP23C-202ENST00000419890 PRKAR2AP13861 404 aaKnown RBP13□□□□□ -0.33
TVP23C-202ENST00000419890 SPDYE1Q8NFV5 336 aaPredicted RBP13□□□□□ -0.33
TVP23C-202ENST00000419890 CLEC11AQ9Y240 323 aa12.98□□□□□ -0.33
TVP23C-202ENST00000419890 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
TVP23C-202ENST00000419890 C19orf67A6NJJ6 358 aa12.91□□□□□ -0.34
TVP23C-202ENST00000419890 CCDC180Q9P1Z9 1646 aa12.89□□□□□ -0.35
TVP23C-202ENST00000419890 CHADLQ6NUI6 762 aa12.81□□□□□ -0.36
TVP23C-202ENST00000419890 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
TVP23C-202ENST00000419890 GABBR2O75899 941 aa12.76□□□□□ -0.37
TVP23C-202ENST00000419890 ABCC9O60706 1549 aa12.74□□□□□ -0.37
TVP23C-202ENST00000419890 PRR29P0C7W0 189 aa12.73□□□□□ -0.37
TVP23C-202ENST00000419890 CSRNP3Q8WYN3 585 aa12.67□□□□□ -0.38
TVP23C-202ENST00000419890 FARP1Q9Y4F1 1045 aaPredicted RBP12.6□□□□□ -0.39
TVP23C-202ENST00000419890 CD44P16070 742 aaKnown RBP12.56□□□□□ -0.4
TVP23C-202ENST00000419890 LHX8Q68G74 356 aa12.56□□□□□ -0.4
TVP23C-202ENST00000419890 POTEIP0CG38 1075 aa12.54□□□□□ -0.4
TVP23C-202ENST00000419890 CREBZFQ9NS37 354 aa12.44□□□□□ -0.42
TVP23C-202ENST00000419890 CLCN6P51797 869 aa12.42□□□□□ -0.42
TVP23C-202ENST00000419890 ZNF579Q8NAF0 562 aaKnown RBP12.39□□□□□ -0.43
TVP23C-202ENST00000419890 STAG3Q9UJ98 1225 aa12.35□□□□□ -0.43
TVP23C-202ENST00000419890 ZRANB1Q9UGI0 708 aa12.34□□□□□ -0.43
TVP23C-202ENST00000419890 SPDYE4A6NLX3 237 aa12.32□□□□□ -0.44
TVP23C-202ENST00000419890 DCAF8L2P0C7V8 631 aa12.32□□□□□ -0.44
TVP23C-202ENST00000419890 EHMT2Q96KQ7 1210 aa12.3□□□□□ -0.44
TVP23C-202ENST00000419890 DCBLD2Q96PD2 775 aa12.29□□□□□ -0.44
TVP23C-202ENST00000419890 GALR2O43603 387 aaPredicted RBP12.26□□□□□ -0.45
TVP23C-202ENST00000419890 MNX1P50219 401 aaPredicted RBP12.23□□□□□ -0.45
TVP23C-202ENST00000419890 RB1CC1Q8TDY2 1594 aa12.19□□□□□ -0.46
TVP23C-202ENST00000419890 PHF12Q96QT6 1004 aa12.18□□□□□ -0.46
TVP23C-202ENST00000419890 NACADO15069 1562 aa12.16□□□□□ -0.46
TVP23C-202ENST00000419890 POTEB2H3BUK9 544 aa12.13□□□□□ -0.47
TVP23C-202ENST00000419890 PAK3O75914 559 aaPredicted RBP12.12□□□□□ -0.47
TVP23C-202ENST00000419890 NPM1P06748 294 aaKnown RBP eCLIP12.11□□□□□ -0.47
TVP23C-202ENST00000419890 OTUD5Q96G74 571 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms