RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 NISCHQ9Y2I1 1504 aa20.45■□□□□ 0.86
CALD1-203ENST00000393118 DCAF8L2P0C7V8 631 aa18.63■□□□□ 0.57
CALD1-203ENST00000393118 SHROOM4Q9ULL8 1493 aa18.45■□□□□ 0.54
CALD1-203ENST00000393118 SUPT5HO00267 1087 aaKnown RBP18.28■□□□□ 0.52
CALD1-203ENST00000393118 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
CALD1-203ENST00000393118 ZCCHC6Q5VYS8 1495 aaKnown RBP17.14■□□□□ 0.33
CALD1-203ENST00000393118 CHIC1Q5VXU3 224 aa17.12■□□□□ 0.33
CALD1-203ENST00000393118 FAM9AQ8IZU1 332 aaPredicted RBP17.06■□□□□ 0.32
CALD1-203ENST00000393118 PCGF6Q9BYE7 350 aa17.06■□□□□ 0.32
CALD1-203ENST00000393118 CCDC180Q9P1Z9 1646 aa16.99■□□□□ 0.31
CALD1-203ENST00000393118 LOC105371045A0A1W2PR82 267 aa16.9■□□□□ 0.3
CALD1-203ENST00000393118 TRIM41Q8WV44 630 aa16.89■□□□□ 0.29
CALD1-203ENST00000393118 ABCC9O60706 1549 aa16.8■□□□□ 0.28
CALD1-203ENST00000393118 PELP1Q8IZL8 1130 aaKnown RBP16.8■□□□□ 0.28
CALD1-203ENST00000393118 TTBK1Q5TCY1 1321 aaPredicted RBP16.6■□□□□ 0.25
CALD1-203ENST00000393118 HRCP23327 699 aa16.58■□□□□ 0.24
CALD1-203ENST00000393118 MYO15BQ96JP2 1530 aa16.57■□□□□ 0.24
CALD1-203ENST00000393118 SCRIBQ14160 1630 aa16.57■□□□□ 0.24
CALD1-203ENST00000393118 PPARGC1BQ86YN6 1023 aaKnown RBP16.54■□□□□ 0.24
CALD1-203ENST00000393118 TRIM26Q12899 539 aaPredicted RBP16.46■□□□□ 0.23
CALD1-203ENST00000393118 DCAF1Q9Y4B6 1507 aa16.39■□□□□ 0.21
CALD1-203ENST00000393118 PABPN1Q86U42 306 aaKnown RBP eCLIP16.39■□□□□ 0.21
CALD1-203ENST00000393118 MYT1Q01538 1121 aa16.35■□□□□ 0.21
CALD1-203ENST00000393118 RANGAP1P46060 587 aaPredicted RBP16.35■□□□□ 0.21
CALD1-203ENST00000393118 UBTFP17480 764 aaKnown RBP16.33■□□□□ 0.2
CALD1-203ENST00000393118 RSF1Q96T23 1441 aaPredicted RBP16.32■□□□□ 0.2
CALD1-203ENST00000393118 CCER1Q8TC90 406 aaPredicted RBP16.22■□□□□ 0.19
CALD1-203ENST00000393118 ZEB1P37275 1124 aaPredicted RBP16.2■□□□□ 0.18
CALD1-203ENST00000393118 APLP2Q06481 763 aa16.18■□□□□ 0.18
CALD1-203ENST00000393118 CECR2Q9BXF3 1484 aa16.14■□□□□ 0.17
CALD1-203ENST00000393118 NACADO15069 1562 aa16.07■□□□□ 0.16
CALD1-203ENST00000393118 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
CALD1-203ENST00000393118 RB1CC1Q8TDY2 1594 aa16.02■□□□□ 0.15
CALD1-203ENST00000393118 MROH2BQ7Z745 1585 aa15.96■□□□□ 0.15
CALD1-203ENST00000393118 HNRNPUL2Q1KMD3 747 aaKnown RBP15.9■□□□□ 0.14
CALD1-203ENST00000393118 CSRNP3Q8WYN3 585 aa15.89■□□□□ 0.13
CALD1-203ENST00000393118 ATP1B4Q9UN42 357 aaPredicted RBP15.83■□□□□ 0.12
CALD1-203ENST00000393118 CENPBP07199 599 aaPredicted RBP15.81■□□□□ 0.12
CALD1-203ENST00000393118 WIZO95785 1651 aa15.8■□□□□ 0.12
CALD1-203ENST00000393118 BAZ1AQ9NRL2 1556 aaPredicted RBP15.79■□□□□ 0.12
CALD1-203ENST00000393118 SCAF1Q9H7N4 1312 aaKnown RBP15.75■□□□□ 0.11
CALD1-203ENST00000393118 ITGAEP38570 1179 aa15.72■□□□□ 0.11
CALD1-203ENST00000393118 YTHDC1Q96MU7 727 aaKnown RBP15.68■□□□□ 0.1
CALD1-203ENST00000393118 ABCC8Q09428 1581 aa15.67■□□□□ 0.1
CALD1-203ENST00000393118 CCDC88BA6NC98 1476 aa15.66■□□□□ 0.1
CALD1-203ENST00000393118 SOGA1O94964 1423 aa15.64■□□□□ 0.09
CALD1-203ENST00000393118 DIEXFQ68CQ4 756 aaKnown RBP15.62■□□□□ 0.09
CALD1-203ENST00000393118 CEP162Q5TB80 1403 aa15.61■□□□□ 0.09
CALD1-203ENST00000393118 GTF3C3Q9Y5Q9 886 aa15.61■□□□□ 0.09
CALD1-203ENST00000393118 WRNQ14191 1432 aaPredicted RBP eCLIP15.59■□□□□ 0.09
CALD1-203ENST00000393118 BAZ1BQ9UIG0 1483 aaKnown RBP15.53■□□□□ 0.08
CALD1-203ENST00000393118 TOP2AP11388 1531 aaKnown RBP15.52■□□□□ 0.08
CALD1-203ENST00000393118 SMARCA4P51532 1647 aa15.5■□□□□ 0.07
CALD1-203ENST00000393118 TNIKQ9UKE5 1360 aa15.49■□□□□ 0.07
CALD1-203ENST00000393118 EEA1Q15075 1411 aa15.47■□□□□ 0.07
CALD1-203ENST00000393118 GOLGA3Q08378 1498 aa15.47■□□□□ 0.07
CALD1-203ENST00000393118 CLIP1P30622 1438 aa15.47■□□□□ 0.07
CALD1-203ENST00000393118 P3H3Q8IVL6 736 aa15.46■□□□□ 0.06
CALD1-203ENST00000393118 ACIN1Q9UKV3 1341 aaKnown RBP15.45■□□□□ 0.06
CALD1-203ENST00000393118 RUSC2Q8N2Y8 1516 aa15.44■□□□□ 0.06
CALD1-203ENST00000393118 ZNF316A6NFI3 1004 aaPredicted RBP15.4■□□□□ 0.06
CALD1-203ENST00000393118 FAM50AQ14320 339 aaKnown RBP15.4■□□□□ 0.06
CALD1-203ENST00000393118 SMARCA2P51531 1590 aa15.38■□□□□ 0.05
CALD1-203ENST00000393118 NEUROD1Q13562 356 aa15.36■□□□□ 0.05
CALD1-203ENST00000393118 CEP164Q9UPV0 1460 aa15.36■□□□□ 0.05
CALD1-203ENST00000393118 ATAD2BQ9ULI0 1458 aa15.33■□□□□ 0.04
CALD1-203ENST00000393118 KIF27Q86VH2 1401 aa15.21■□□□□ 0.03
CALD1-203ENST00000393118 RAPGEF2Q9Y4G8 1499 aa15.2■□□□□ 0.02
CALD1-203ENST00000393118 ARID3CA6NKF2 412 aa15.19■□□□□ 0.02
CALD1-203ENST00000393118 ERICH6Q7L0X2 663 aa15.17■□□□□ 0.02
CALD1-203ENST00000393118 VPS8Q8N3P4 1428 aa15.17■□□□□ 0.02
CALD1-203ENST00000393118 KANK4Q5T7N3 995 aaPredicted RBP15.15■□□□□ 0.02
CALD1-203ENST00000393118 MIER1Q8N108 512 aa15.14■□□□□ 0.01
CALD1-203ENST00000393118 BICRAQ9NZM4 1560 aa15.13■□□□□ 0.01
CALD1-203ENST00000393118 BCL11AQ9H165 835 aa15.1■□□□□ 0.01
CALD1-203ENST00000393118 CUX2O14529 1486 aa15.1■□□□□ 0.01
CALD1-203ENST00000393118 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
CALD1-203ENST00000393118 UNC13AQ9UPW8 1703 aa15.08■□□□□ 0
CALD1-203ENST00000393118 TRIM52Q96A61 297 aa15.06■□□□□ 0
CALD1-203ENST00000393118 CARMIL1Q5VZK9 1371 aa15.03■□□□□ -0
CALD1-203ENST00000393118 FBLN2P98095 1184 aa15.02■□□□□ -0
CALD1-203ENST00000393118 CNGB1Q14028 1251 aaPredicted RBP15□□□□□ -0.01
CALD1-203ENST00000393118 HIRIP3Q9BW71 556 aaPredicted RBP14.97□□□□□ -0.01
CALD1-203ENST00000393118 CADPSQ9ULU8 1353 aa14.97□□□□□ -0.01
CALD1-203ENST00000393118 POLR3GLQ9BT43 218 aa14.97□□□□□ -0.01
CALD1-203ENST00000393118 CCNB3Q8WWL7 1395 aa14.96□□□□□ -0.01
CALD1-203ENST00000393118 EIF4G1Q04637 1599 aaKnown RBP14.96□□□□□ -0.01
CALD1-203ENST00000393118 CHIC2Q9UKJ5 165 aa14.96□□□□□ -0.02
CALD1-203ENST00000393118 NEFLP07196 543 aa14.95□□□□□ -0.02
CALD1-203ENST00000393118 NCAPD3P42695 1498 aa14.95□□□□□ -0.02
CALD1-203ENST00000393118 DDX10Q13206 875 aaKnown RBP14.95□□□□□ -0.02
CALD1-203ENST00000393118 MTUS2Q5JR59 1369 aa14.94□□□□□ -0.02
CALD1-203ENST00000393118 SIN3AQ96ST3 1273 aa14.92□□□□□ -0.02
CALD1-203ENST00000393118 KIF21BO75037 1637 aa14.9□□□□□ -0.02
CALD1-203ENST00000393118 BCANQ96GW7 911 aa14.89□□□□□ -0.03
CALD1-203ENST00000393118 TDRD9Q8NDG6 1382 aaKnown RBP14.87□□□□□ -0.03
CALD1-203ENST00000393118 IGF1RP08069 1367 aa14.86□□□□□ -0.03
CALD1-203ENST00000393118 ANP32CO43423 234 aa14.86□□□□□ -0.03
CALD1-203ENST00000393118 TONSLQ96HA7 1378 aa14.85□□□□□ -0.03
CALD1-203ENST00000393118 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms