RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 DCAF8L2P0C7V8 631 aa19.52■□□□□ 0.72
HIF3A-205ENST00000377670 NISCHQ9Y2I1 1504 aa19.06■□□□□ 0.64
HIF3A-205ENST00000377670 SHROOM4Q9ULL8 1493 aa18.19■□□□□ 0.5
HIF3A-205ENST00000377670 SUPT5HO00267 1087 aaKnown RBP18.17■□□□□ 0.5
HIF3A-205ENST00000377670 EHMT2Q96KQ7 1210 aa17.6■□□□□ 0.41
HIF3A-205ENST00000377670 FAM9AQ8IZU1 332 aaPredicted RBP17.6■□□□□ 0.41
HIF3A-205ENST00000377670 APLP2Q06481 763 aa17.13■□□□□ 0.33
HIF3A-205ENST00000377670 PELP1Q8IZL8 1130 aaKnown RBP16.95■□□□□ 0.3
HIF3A-205ENST00000377670 TTBK1Q5TCY1 1321 aaPredicted RBP16.9■□□□□ 0.3
HIF3A-205ENST00000377670 ATP1B4Q9UN42 357 aaPredicted RBP16.84■□□□□ 0.29
HIF3A-205ENST00000377670 RANGAP1P46060 587 aaPredicted RBP16.79■□□□□ 0.28
HIF3A-205ENST00000377670 TRIM41Q8WV44 630 aa16.7■□□□□ 0.26
HIF3A-205ENST00000377670 PCGF6Q9BYE7 350 aa16.67■□□□□ 0.26
HIF3A-205ENST00000377670 MYT1LQ9UL68 1186 aa16.65■□□□□ 0.26
HIF3A-205ENST00000377670 ABCC9O60706 1549 aa16.51■□□□□ 0.23
HIF3A-205ENST00000377670 PPARGC1BQ86YN6 1023 aaKnown RBP16.47■□□□□ 0.23
HIF3A-205ENST00000377670 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.44■□□□□ 0.22
HIF3A-205ENST00000377670 HNRNPUL2Q1KMD3 747 aaKnown RBP16.44■□□□□ 0.22
HIF3A-205ENST00000377670 UBTFP17480 764 aaKnown RBP16.42■□□□□ 0.22
HIF3A-205ENST00000377670 ERICH6Q7L0X2 663 aa16.38■□□□□ 0.21
HIF3A-205ENST00000377670 CENPBP07199 599 aaPredicted RBP16.37■□□□□ 0.21
HIF3A-205ENST00000377670 PABPN1Q86U42 306 aaKnown RBP eCLIP16.37■□□□□ 0.21
HIF3A-205ENST00000377670 LOC105371045A0A1W2PR82 267 aa16.35■□□□□ 0.21
HIF3A-205ENST00000377670 MYT1Q01538 1121 aa16.3■□□□□ 0.2
HIF3A-205ENST00000377670 CHIC1Q5VXU3 224 aa16.27■□□□□ 0.2
HIF3A-205ENST00000377670 ZEB1P37275 1124 aaPredicted RBP16.17■□□□□ 0.18
HIF3A-205ENST00000377670 CCER1Q8TC90 406 aaPredicted RBP16.16■□□□□ 0.18
HIF3A-205ENST00000377670 YTHDC1Q96MU7 727 aaKnown RBP16.06■□□□□ 0.16
HIF3A-205ENST00000377670 FBLN2P98095 1184 aa16.03■□□□□ 0.16
HIF3A-205ENST00000377670 ITGAEP38570 1179 aa15.95■□□□□ 0.14
HIF3A-205ENST00000377670 NEFLP07196 543 aa15.91■□□□□ 0.14
HIF3A-205ENST00000377670 TRIM26Q12899 539 aaPredicted RBP15.88■□□□□ 0.13
HIF3A-205ENST00000377670 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
HIF3A-205ENST00000377670 SCRIBQ14160 1630 aa15.83■□□□□ 0.12
HIF3A-205ENST00000377670 ZCCHC6Q5VYS8 1495 aaKnown RBP15.8■□□□□ 0.12
HIF3A-205ENST00000377670 POLR3GLQ9BT43 218 aa15.79■□□□□ 0.12
HIF3A-205ENST00000377670 HRCP23327 699 aa15.78■□□□□ 0.12
HIF3A-205ENST00000377670 BCANQ96GW7 911 aa15.73■□□□□ 0.11
HIF3A-205ENST00000377670 ESF1Q9H501 851 aaKnown RBP15.7■□□□□ 0.1
HIF3A-205ENST00000377670 NPM1P06748 294 aaKnown RBP eCLIP15.66■□□□□ 0.1
HIF3A-205ENST00000377670 PLPPR3Q6T4P5 718 aa15.63■□□□□ 0.09
HIF3A-205ENST00000377670 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
HIF3A-205ENST00000377670 CNGB1Q14028 1251 aaPredicted RBP15.53■□□□□ 0.08
HIF3A-205ENST00000377670 P3H3Q8IVL6 736 aa15.52■□□□□ 0.08
HIF3A-205ENST00000377670 FAM50AQ14320 339 aaKnown RBP15.5■□□□□ 0.07
HIF3A-205ENST00000377670 ARID3CA6NKF2 412 aa15.5■□□□□ 0.07
HIF3A-205ENST00000377670 DAXXQ9UER7 740 aaPredicted RBP15.47■□□□□ 0.07
HIF3A-205ENST00000377670 TRIM52Q96A61 297 aa15.46■□□□□ 0.07
HIF3A-205ENST00000377670 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
HIF3A-205ENST00000377670 STAG3Q9UJ98 1225 aa15.4■□□□□ 0.06
HIF3A-205ENST00000377670 SLC24A1O60721 1099 aa15.38■□□□□ 0.05
HIF3A-205ENST00000377670 NEUROD1Q13562 356 aa15.33■□□□□ 0.05
HIF3A-205ENST00000377670 ZNF777Q9ULD5 760 aaPredicted RBP15.31■□□□□ 0.04
HIF3A-205ENST00000377670 DIEXFQ68CQ4 756 aaKnown RBP15.3■□□□□ 0.04
HIF3A-205ENST00000377670 RTL5Q5HYW3 569 aaPredicted RBP15.3■□□□□ 0.04
HIF3A-205ENST00000377670 CDK11AQ9UQ88 783 aaPredicted RBP15.3■□□□□ 0.04
HIF3A-205ENST00000377670 MYO15BQ96JP2 1530 aa15.29■□□□□ 0.04
HIF3A-205ENST00000377670 RSF1Q96T23 1441 aaPredicted RBP15.27■□□□□ 0.04
HIF3A-205ENST00000377670 ZNF326Q5BKZ1 582 aaKnown RBP15.25■□□□□ 0.03
HIF3A-205ENST00000377670 RB1CC1Q8TDY2 1594 aa15.25■□□□□ 0.03
HIF3A-205ENST00000377670 GTF3C3Q9Y5Q9 886 aa15.25■□□□□ 0.03
HIF3A-205ENST00000377670 CHGAP10645 457 aaKnown RBP15.22■□□□□ 0.03
HIF3A-205ENST00000377670 TRHP20396 242 aaPredicted RBP15.22■□□□□ 0.03
HIF3A-205ENST00000377670 CHMP7Q8WUX9 453 aaPredicted RBP15.21■□□□□ 0.02
HIF3A-205ENST00000377670 CECR2Q9BXF3 1484 aa15.2■□□□□ 0.02
HIF3A-205ENST00000377670 NEFMP07197 916 aa15.18■□□□□ 0.02
HIF3A-205ENST00000377670 ZNF316A6NFI3 1004 aaPredicted RBP15.16■□□□□ 0.02
HIF3A-205ENST00000377670 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
HIF3A-205ENST00000377670 ARID4BQ4LE39 1312 aaPredicted RBP15.12■□□□□ 0.01
HIF3A-205ENST00000377670 NACADO15069 1562 aa15.12■□□□□ 0.01
HIF3A-205ENST00000377670 A0A0G2JS52 829 aa15.08■□□□□ 0
HIF3A-205ENST00000377670 ZBTB47Q9UFB7 747 aaPredicted RBP15.07■□□□□ 0
HIF3A-205ENST00000377670 ERCC6Q03468 1493 aa15.06■□□□□ 0
HIF3A-205ENST00000377670 C14orf37Q86TY3 774 aa15.05■□□□□ -0
HIF3A-205ENST00000377670 CLSPNQ9HAW4 1339 aa15.03■□□□□ -0
HIF3A-205ENST00000377670 DCAF1Q9Y4B6 1507 aa15.02□□□□□ -0.01
HIF3A-205ENST00000377670 BAZ1BQ9UIG0 1483 aaKnown RBP14.99□□□□□ -0.01
HIF3A-205ENST00000377670 CHIC2Q9UKJ5 165 aa14.97□□□□□ -0.01
HIF3A-205ENST00000377670 HAP1P54257 671 aaPredicted RBP14.97□□□□□ -0.01
HIF3A-205ENST00000377670 ACIN1Q9UKV3 1341 aaKnown RBP14.96□□□□□ -0.01
HIF3A-205ENST00000377670 KCNH8Q96L42 1107 aa14.95□□□□□ -0.02
HIF3A-205ENST00000377670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.94□□□□□ -0.02
HIF3A-205ENST00000377670 PPP1R15AO75807 674 aaPredicted RBP14.94□□□□□ -0.02
HIF3A-205ENST00000377670 MROH2BQ7Z745 1585 aa14.93□□□□□ -0.02
HIF3A-205ENST00000377670 WRNQ14191 1432 aaPredicted RBP eCLIP14.91□□□□□ -0.02
HIF3A-205ENST00000377670 BCL11AQ9H165 835 aa14.91□□□□□ -0.02
HIF3A-205ENST00000377670 PLEKHG5O94827 1062 aa14.91□□□□□ -0.02
HIF3A-205ENST00000377670 CLIP1P30622 1438 aa14.88□□□□□ -0.03
HIF3A-205ENST00000377670 NPM2Q86SE8 214 aaKnown RBP14.88□□□□□ -0.03
HIF3A-205ENST00000377670 ZBTB7CA1YPR0 619 aa14.87□□□□□ -0.03
HIF3A-205ENST00000377670 BAZ1AQ9NRL2 1556 aaPredicted RBP14.87□□□□□ -0.03
HIF3A-205ENST00000377670 TSPY4P0CV99 314 aa14.86□□□□□ -0.03
HIF3A-205ENST00000377670 TSPY10P0CW01 314 aa14.86□□□□□ -0.03
HIF3A-205ENST00000377670 AEBP2Q6ZN18 517 aaPredicted RBP14.85□□□□□ -0.03
HIF3A-205ENST00000377670 CANXP27824 592 aaKnown RBP14.84□□□□□ -0.03
HIF3A-205ENST00000377670 CEP162Q5TB80 1403 aa14.84□□□□□ -0.03
HIF3A-205ENST00000377670 SOGA1O94964 1423 aa14.81□□□□□ -0.04
HIF3A-205ENST00000377670 ANP32CO43423 234 aa14.8□□□□□ -0.04
HIF3A-205ENST00000377670 HIRIP3Q9BW71 556 aaPredicted RBP14.79□□□□□ -0.04
HIF3A-205ENST00000377670 SENP3Q9H4L4 574 aaPredicted RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms