RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 NISCHQ9Y2I1 1504 aa16.74■□□□□ 0.27
PTCH1-204ENST00000375290 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
PTCH1-204ENST00000375290 MYT1Q01538 1121 aa16.53■□□□□ 0.24
PTCH1-204ENST00000375290 ZEB1P37275 1124 aaPredicted RBP16.06■□□□□ 0.16
PTCH1-204ENST00000375290 DCAF8L2P0C7V8 631 aa15.98■□□□□ 0.15
PTCH1-204ENST00000375290 CENPBP07199 599 aaPredicted RBP15.87■□□□□ 0.13
PTCH1-204ENST00000375290 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.13
PTCH1-204ENST00000375290 CCER1Q8TC90 406 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-204ENST00000375290 APLP2Q06481 763 aa15.6■□□□□ 0.09
PTCH1-204ENST00000375290 ERICH6Q7L0X2 663 aa15.39■□□□□ 0.06
PTCH1-204ENST00000375290 PCGF6Q9BYE7 350 aa15.36■□□□□ 0.05
PTCH1-204ENST00000375290 FAM9AQ8IZU1 332 aaPredicted RBP15.33■□□□□ 0.04
PTCH1-204ENST00000375290 SHROOM4Q9ULL8 1493 aa15.31■□□□□ 0.04
PTCH1-204ENST00000375290 YTHDC1Q96MU7 727 aaKnown RBP15.25■□□□□ 0.03
PTCH1-204ENST00000375290 NEFLP07196 543 aa15.23■□□□□ 0.03
PTCH1-204ENST00000375290 TRIM26Q12899 539 aaPredicted RBP15.18■□□□□ 0.02
PTCH1-204ENST00000375290 TTBK1Q5TCY1 1321 aaPredicted RBP15.18■□□□□ 0.02
PTCH1-204ENST00000375290 HRCP23327 699 aa15.18■□□□□ 0.02
PTCH1-204ENST00000375290 TRIM41Q8WV44 630 aa15.06■□□□□ 0
PTCH1-204ENST00000375290 CLSPNQ9HAW4 1339 aa14.95□□□□□ -0.02
PTCH1-204ENST00000375290 DAXXQ9UER7 740 aaPredicted RBP14.74□□□□□ -0.05
PTCH1-204ENST00000375290 MYT1LQ9UL68 1186 aa14.71□□□□□ -0.05
PTCH1-204ENST00000375290 UBTFP17480 764 aaKnown RBP14.68□□□□□ -0.06
PTCH1-204ENST00000375290 RTL5Q5HYW3 569 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-204ENST00000375290 EHMT2Q96KQ7 1210 aa14.59□□□□□ -0.07
PTCH1-204ENST00000375290 DIEXFQ68CQ4 756 aaKnown RBP14.58□□□□□ -0.08
PTCH1-204ENST00000375290 CHIC1Q5VXU3 224 aa14.57□□□□□ -0.08
PTCH1-204ENST00000375290 DCAF1Q9Y4B6 1507 aa14.49□□□□□ -0.09
PTCH1-204ENST00000375290 ZNF316A6NFI3 1004 aaPredicted RBP14.37□□□□□ -0.11
PTCH1-204ENST00000375290 ACIN1Q9UKV3 1341 aaKnown RBP14.32□□□□□ -0.12
PTCH1-204ENST00000375290 CDK11AQ9UQ88 783 aaPredicted RBP14.32□□□□□ -0.12
PTCH1-204ENST00000375290 GTF3C3Q9Y5Q9 886 aa14.27□□□□□ -0.13
PTCH1-204ENST00000375290 GLIPR1L2Q4G1C9 344 aa14.27□□□□□ -0.13
PTCH1-204ENST00000375290 ANP32CO43423 234 aa14.2□□□□□ -0.14
PTCH1-204ENST00000375290 ATP1B4Q9UN42 357 aaPredicted RBP14.2□□□□□ -0.14
PTCH1-204ENST00000375290 CCDC180Q9P1Z9 1646 aa14.19□□□□□ -0.14
PTCH1-204ENST00000375290 ANP32AP39687 249 aaKnown RBP14.16□□□□□ -0.14
PTCH1-204ENST00000375290 LOC105371045A0A1W2PR82 267 aa14.1□□□□□ -0.15
PTCH1-204ENST00000375290 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.09□□□□□ -0.15
PTCH1-204ENST00000375290 RANGAP1P46060 587 aaPredicted RBP14.08□□□□□ -0.16
PTCH1-204ENST00000375290 PPARGC1BQ86YN6 1023 aaKnown RBP14.07□□□□□ -0.16
PTCH1-204ENST00000375290 HNRNPUL2Q1KMD3 747 aaKnown RBP14.06□□□□□ -0.16
PTCH1-204ENST00000375290 ZCCHC6Q5VYS8 1495 aaKnown RBP14.02□□□□□ -0.16
PTCH1-204ENST00000375290 ANP32BQ92688 251 aaKnown RBP14.01□□□□□ -0.17
PTCH1-204ENST00000375290 EEA1Q15075 1411 aa13.98□□□□□ -0.17
PTCH1-204ENST00000375290 ANP32EQ9BTT0 268 aa13.97□□□□□ -0.17
PTCH1-204ENST00000375290 ZBTB47Q9UFB7 747 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-204ENST00000375290 UPF2Q9HAU5 1272 aaKnown RBP13.89□□□□□ -0.19
PTCH1-204ENST00000375290 ITGAEP38570 1179 aa13.88□□□□□ -0.19
PTCH1-204ENST00000375290 EIF5BO60841 1220 aaKnown RBP13.87□□□□□ -0.19
PTCH1-204ENST00000375290 NEFMP07197 916 aa13.82□□□□□ -0.2
PTCH1-204ENST00000375290 CSRNP3Q8WYN3 585 aa13.81□□□□□ -0.2
PTCH1-204ENST00000375290 FAM50AQ14320 339 aaKnown RBP13.8□□□□□ -0.2
PTCH1-204ENST00000375290 TONSLQ96HA7 1378 aa13.78□□□□□ -0.2
PTCH1-204ENST00000375290 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.78□□□□□ -0.2
PTCH1-204ENST00000375290 POLR3GLQ9BT43 218 aa13.77□□□□□ -0.2
PTCH1-204ENST00000375290 DDRGK1Q96HY6 314 aa13.77□□□□□ -0.21
PTCH1-204ENST00000375290 TRIM52Q96A61 297 aa13.72□□□□□ -0.21
PTCH1-204ENST00000375290 CANXP27824 592 aaKnown RBP13.71□□□□□ -0.22
PTCH1-204ENST00000375290 ERICH6BQ5W0A0 696 aa13.7□□□□□ -0.22
PTCH1-204ENST00000375290 FKBP8Q14318 412 aa13.69□□□□□ -0.22
PTCH1-204ENST00000375290 TIMELESSQ9UNS1 1208 aa13.68□□□□□ -0.22
PTCH1-204ENST00000375290 BCANQ96GW7 911 aa13.67□□□□□ -0.22
PTCH1-204ENST00000375290 NEUROD1Q13562 356 aa13.66□□□□□ -0.22
PTCH1-204ENST00000375290 SCAF1Q9H7N4 1312 aaKnown RBP13.66□□□□□ -0.22
PTCH1-204ENST00000375290 PPM1GO15355 546 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-204ENST00000375290 GOLGA3Q08378 1498 aa13.64□□□□□ -0.23
PTCH1-204ENST00000375290 BECN1Q14457 450 aa13.64□□□□□ -0.23
PTCH1-204ENST00000375290 CCDC136Q96JN2 1154 aa13.62□□□□□ -0.23
PTCH1-204ENST00000375290 HSP90AA1P07900 732 aaKnown RBP13.61□□□□□ -0.23
PTCH1-204ENST00000375290 TNNT2P45379 298 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-204ENST00000375290 HNRNPUQ00839 825 aaKnown RBP eCLIP13.6□□□□□ -0.23
PTCH1-204ENST00000375290 TRIM44Q96DX7 344 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-204ENST00000375290 CLIP1P30622 1438 aa13.55□□□□□ -0.24
PTCH1-204ENST00000375290 RB1CC1Q8TDY2 1594 aa13.54□□□□□ -0.24
PTCH1-204ENST00000375290 RSF1Q96T23 1441 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-204ENST00000375290 GOLGA6L22H0YM25 854 aa13.54□□□□□ -0.24
PTCH1-204ENST00000375290 CEP164Q9UPV0 1460 aa13.54□□□□□ -0.24
PTCH1-204ENST00000375290 SLC24A1O60721 1099 aa13.53□□□□□ -0.24
PTCH1-204ENST00000375290 NCLP19338 710 aaKnown RBP13.53□□□□□ -0.24
PTCH1-204ENST00000375290 TNIKQ9UKE5 1360 aa13.52□□□□□ -0.24
PTCH1-204ENST00000375290 ARID4BQ4LE39 1312 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-204ENST00000375290 SLC4A1APQ9BWU0 796 aaKnown RBP13.49□□□□□ -0.25
PTCH1-204ENST00000375290 SCRIBQ14160 1630 aa13.49□□□□□ -0.25
PTCH1-204ENST00000375290 TMC1Q8TDI8 760 aa13.49□□□□□ -0.25
PTCH1-204ENST00000375290 CEP162Q5TB80 1403 aa13.48□□□□□ -0.25
PTCH1-204ENST00000375290 CFAP44Q96MT7 982 aa13.47□□□□□ -0.25
PTCH1-204ENST00000375290 CHMP4BQ9H444 224 aaKnown RBP13.46□□□□□ -0.25
PTCH1-204ENST00000375290 NACADO15069 1562 aa13.46□□□□□ -0.25
PTCH1-204ENST00000375290 EIF4G2P78344 907 aaKnown RBP eCLIP13.46□□□□□ -0.254e-7■□□□□ 8.6
PTCH1-204ENST00000375290 CCER2I3L3R5 266 aa13.46□□□□□ -0.26
PTCH1-204ENST00000375290 PTMSP20962 102 aa13.45□□□□□ -0.26
PTCH1-204ENST00000375290 PPP4R2Q9NY27 417 aa13.43□□□□□ -0.26
PTCH1-204ENST00000375290 CDCA8Q53HL2 280 aa13.42□□□□□ -0.26
PTCH1-204ENST00000375290 NPM2Q86SE8 214 aaKnown RBP13.42□□□□□ -0.26
PTCH1-204ENST00000375290 MRS2Q9HD23 443 aa13.41□□□□□ -0.26
PTCH1-204ENST00000375290 MIER1Q8N108 512 aa13.41□□□□□ -0.26
PTCH1-204ENST00000375290 DDX10Q13206 875 aaKnown RBP13.4□□□□□ -0.27
PTCH1-204ENST00000375290 FHAD1B1AJZ9 1412 aa13.39□□□□□ -0.27
PTCH1-204ENST00000375290 WDR43Q15061 677 aaKnown RBP eCLIP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms