RNA–Protein interactions for RNA: ENST00000308259.9

MSRB3-201, Transcript of methionine sulfoxide reductase B3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSRB3, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSRB3-201ENST00000308259 NISCHQ9Y2I1 1504 aa20.19■□□□□ 0.82
MSRB3-201ENST00000308259 SHROOM4Q9ULL8 1493 aa17.91■□□□□ 0.46
MSRB3-201ENST00000308259 PELP1Q8IZL8 1130 aaKnown RBP17.8■□□□□ 0.44
MSRB3-201ENST00000308259 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
MSRB3-201ENST00000308259 SUPT5HO00267 1087 aaKnown RBP17.63■□□□□ 0.41
MSRB3-201ENST00000308259 MYT1Q01538 1121 aa17.47■□□□□ 0.39
MSRB3-201ENST00000308259 ZCCHC6Q5VYS8 1495 aaKnown RBP17.06■□□□□ 0.32
MSRB3-201ENST00000308259 HRCP23327 699 aa17.05■□□□□ 0.32
MSRB3-201ENST00000308259 CHIC1Q5VXU3 224 aa16.97■□□□□ 0.31
MSRB3-201ENST00000308259 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
MSRB3-201ENST00000308259 PPARGC1BQ86YN6 1023 aaKnown RBP16.95■□□□□ 0.3
MSRB3-201ENST00000308259 PCGF6Q9BYE7 350 aa16.88■□□□□ 0.29
MSRB3-201ENST00000308259 CCDC180Q9P1Z9 1646 aa16.82■□□□□ 0.28
MSRB3-201ENST00000308259 LOC105371045A0A1W2PR82 267 aa16.7■□□□□ 0.26
MSRB3-201ENST00000308259 ABCC9O60706 1549 aa16.68■□□□□ 0.26
MSRB3-201ENST00000308259 SCAF1Q9H7N4 1312 aaKnown RBP16.52■□□□□ 0.24
MSRB3-201ENST00000308259 EHMT2Q96KQ7 1210 aa16.46■□□□□ 0.23
MSRB3-201ENST00000308259 FAM9AQ8IZU1 332 aaPredicted RBP16.38■□□□□ 0.21
MSRB3-201ENST00000308259 TTBK1Q5TCY1 1321 aaPredicted RBP16.32■□□□□ 0.2
MSRB3-201ENST00000308259 DCAF1Q9Y4B6 1507 aa16.29■□□□□ 0.2
MSRB3-201ENST00000308259 CENPBP07199 599 aaPredicted RBP16.25■□□□□ 0.19
MSRB3-201ENST00000308259 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
MSRB3-201ENST00000308259 SCRIBQ14160 1630 aa16.23■□□□□ 0.19
MSRB3-201ENST00000308259 GTF3C3Q9Y5Q9 886 aa16.2■□□□□ 0.18
MSRB3-201ENST00000308259 TRIM26Q12899 539 aaPredicted RBP16.2■□□□□ 0.18
MSRB3-201ENST00000308259 ERICH6Q7L0X2 663 aa16.17■□□□□ 0.18
MSRB3-201ENST00000308259 RSF1Q96T23 1441 aaPredicted RBP16.16■□□□□ 0.18
MSRB3-201ENST00000308259 BCL11AQ9H165 835 aa16.1■□□□□ 0.17
MSRB3-201ENST00000308259 RB1CC1Q8TDY2 1594 aa16.05■□□□□ 0.16
MSRB3-201ENST00000308259 ACIN1Q9UKV3 1341 aaKnown RBP16.05■□□□□ 0.16
MSRB3-201ENST00000308259 ZEB1P37275 1124 aaPredicted RBP16.02■□□□□ 0.16
MSRB3-201ENST00000308259 NACADO15069 1562 aa16.02■□□□□ 0.16
MSRB3-201ENST00000308259 PABPN1Q86U42 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
MSRB3-201ENST00000308259 YTHDC1Q96MU7 727 aaKnown RBP15.98■□□□□ 0.15
MSRB3-201ENST00000308259 NEUROD1Q13562 356 aa15.97■□□□□ 0.15
MSRB3-201ENST00000308259 CECR2Q9BXF3 1484 aa15.96■□□□□ 0.15
MSRB3-201ENST00000308259 PRKCSHP14314 528 aaPredicted RBP15.86■□□□□ 0.13
MSRB3-201ENST00000308259 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.13
MSRB3-201ENST00000308259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.78■□□□□ 0.12
MSRB3-201ENST00000308259 WIZO95785 1651 aa15.75■□□□□ 0.11
MSRB3-201ENST00000308259 CCER1Q8TC90 406 aaPredicted RBP15.67■□□□□ 0.1
MSRB3-201ENST00000308259 DIEXFQ68CQ4 756 aaKnown RBP15.62■□□□□ 0.09
MSRB3-201ENST00000308259 ANP32EQ9BTT0 268 aa15.59■□□□□ 0.09
MSRB3-201ENST00000308259 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
MSRB3-201ENST00000308259 CCDC88BA6NC98 1476 aa15.53■□□□□ 0.08
MSRB3-201ENST00000308259 UBTFP17480 764 aaKnown RBP15.52■□□□□ 0.07
MSRB3-201ENST00000308259 SOGA1O94964 1423 aa15.48■□□□□ 0.07
MSRB3-201ENST00000308259 BAZ1AQ9NRL2 1556 aaPredicted RBP15.47■□□□□ 0.07
MSRB3-201ENST00000308259 RANGAP1P46060 587 aaPredicted RBP15.47■□□□□ 0.07
MSRB3-201ENST00000308259 CSRNP3Q8WYN3 585 aa15.46■□□□□ 0.07
MSRB3-201ENST00000308259 RUSC2Q8N2Y8 1516 aa15.42■□□□□ 0.06
MSRB3-201ENST00000308259 CEP162Q5TB80 1403 aa15.4■□□□□ 0.06
MSRB3-201ENST00000308259 EIF4G1Q04637 1599 aaKnown RBP15.38■□□□□ 0.05
MSRB3-201ENST00000308259 SLC24A1O60721 1099 aa15.36■□□□□ 0.05
MSRB3-201ENST00000308259 HNRNPUL2Q1KMD3 747 aaKnown RBP15.35■□□□□ 0.05
MSRB3-201ENST00000308259 TOP2AP11388 1531 aaKnown RBP15.34■□□□□ 0.05
MSRB3-201ENST00000308259 SMARCA2P51531 1590 aa15.32■□□□□ 0.04
MSRB3-201ENST00000308259 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
MSRB3-201ENST00000308259 BCANQ96GW7 911 aa15.26■□□□□ 0.03
MSRB3-201ENST00000308259 TNIKQ9UKE5 1360 aa15.26■□□□□ 0.03
MSRB3-201ENST00000308259 WRNQ14191 1432 aaPredicted RBP eCLIP15.22■□□□□ 0.03
MSRB3-201ENST00000308259 UNC13AQ9UPW8 1703 aa15.18■□□□□ 0.02
MSRB3-201ENST00000308259 EIF5BO60841 1220 aaKnown RBP15.17■□□□□ 0.02
MSRB3-201ENST00000308259 ZNF316A6NFI3 1004 aaPredicted RBP15.15■□□□□ 0.02
MSRB3-201ENST00000308259 APLP2Q06481 763 aa15.15■□□□□ 0.02
MSRB3-201ENST00000308259 GOLGA3Q08378 1498 aa15.15■□□□□ 0.02
MSRB3-201ENST00000308259 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
MSRB3-201ENST00000308259 CLIP1P30622 1438 aa15.09■□□□□ 0.01
MSRB3-201ENST00000308259 EEA1Q15075 1411 aa15.09■□□□□ 0.01
MSRB3-201ENST00000308259 MIER1Q8N108 512 aa15.09■□□□□ 0.01
MSRB3-201ENST00000308259 ANO8Q9HCE9 1232 aaPredicted RBP15.08■□□□□ 0
MSRB3-201ENST00000308259 SYNJ1O43426 1573 aa15.07■□□□□ 0
MSRB3-201ENST00000308259 NEFLP07196 543 aa15.07■□□□□ 0
MSRB3-201ENST00000308259 TSHZ2Q9NRE2 1034 aa15.05■□□□□ -0
MSRB3-201ENST00000308259 CCDC136Q96JN2 1154 aa15.05■□□□□ -0
MSRB3-201ENST00000308259 BICRAQ9NZM4 1560 aa15.04■□□□□ -0
MSRB3-201ENST00000308259 RAPGEF2Q9Y4G8 1499 aa15.04■□□□□ -0
MSRB3-201ENST00000308259 CEP164Q9UPV0 1460 aa15.02□□□□□ -0.01
MSRB3-201ENST00000308259 SUPT16HQ9Y5B9 1047 aaKnown RBP14.98□□□□□ -0.01
MSRB3-201ENST00000308259 ITGAEP38570 1179 aa14.97□□□□□ -0.01
MSRB3-201ENST00000308259 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
MSRB3-201ENST00000308259 VPS8Q8N3P4 1428 aa14.95□□□□□ -0.02
MSRB3-201ENST00000308259 KANK4Q5T7N3 995 aaPredicted RBP14.94□□□□□ -0.02
MSRB3-201ENST00000308259 RTN4Q9NQC3 1192 aaKnown RBP14.93□□□□□ -0.02
MSRB3-201ENST00000308259 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.93□□□□□ -0.02
MSRB3-201ENST00000308259 KIF21BO75037 1637 aa14.88□□□□□ -0.03
MSRB3-201ENST00000308259 RTL5Q5HYW3 569 aaPredicted RBP14.86□□□□□ -0.03
MSRB3-201ENST00000308259 NBR1Q14596 966 aa14.86□□□□□ -0.03
MSRB3-201ENST00000308259 DEKP35659 375 aaKnown RBP14.85□□□□□ -0.03
MSRB3-201ENST00000308259 FKBP8Q14318 412 aa14.84□□□□□ -0.03
MSRB3-201ENST00000308259 PEG3Q9GZU2 1588 aa14.84□□□□□ -0.03
MSRB3-201ENST00000308259 ERCC6Q03468 1493 aa14.83□□□□□ -0.03
MSRB3-201ENST00000308259 ATP1B4Q9UN42 357 aaPredicted RBP14.82□□□□□ -0.04
MSRB3-201ENST00000308259 CLSPNQ9HAW4 1339 aa14.81□□□□□ -0.04
MSRB3-201ENST00000308259 SALL2Q9Y467 1007 aaPredicted RBP14.8□□□□□ -0.04
MSRB3-201ENST00000308259 PDS5BQ9NTI5 1447 aa14.8□□□□□ -0.04
MSRB3-201ENST00000308259 RBM19Q9Y4C8 960 aaKnown RBP14.79□□□□□ -0.04
MSRB3-201ENST00000308259 DHX57Q6P158 1386 aaKnown RBP14.78□□□□□ -0.04
MSRB3-201ENST00000308259 MYT1LQ9UL68 1186 aa14.76□□□□□ -0.05
MSRB3-201ENST00000308259 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms