RNA–Protein interactions for RNA: ENST00000307142.8

SYNPO2-201, Transcript of synaptopodin 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SYNPO2, Length 7,295 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-201ENST00000307142 DCAF8L2P0C7V8 631 aa19.55■□□□□ 0.72
SYNPO2-201ENST00000307142 NISCHQ9Y2I1 1504 aa18.68■□□□□ 0.58
SYNPO2-201ENST00000307142 SUPT5HO00267 1087 aaKnown RBP17.95■□□□□ 0.46
SYNPO2-201ENST00000307142 SHROOM4Q9ULL8 1493 aa17.93■□□□□ 0.46
SYNPO2-201ENST00000307142 EHMT2Q96KQ7 1210 aa17.53■□□□□ 0.4
SYNPO2-201ENST00000307142 FAM9AQ8IZU1 332 aaPredicted RBP17.23■□□□□ 0.35
SYNPO2-201ENST00000307142 APLP2Q06481 763 aa17.08■□□□□ 0.33
SYNPO2-201ENST00000307142 RANGAP1P46060 587 aaPredicted RBP16.94■□□□□ 0.3
SYNPO2-201ENST00000307142 ATP1B4Q9UN42 357 aaPredicted RBP16.86■□□□□ 0.29
SYNPO2-201ENST00000307142 TTBK1Q5TCY1 1321 aaPredicted RBP16.82■□□□□ 0.28
SYNPO2-201ENST00000307142 TRIM41Q8WV44 630 aa16.66■□□□□ 0.26
SYNPO2-201ENST00000307142 ABCC9O60706 1549 aa16.65■□□□□ 0.26
SYNPO2-201ENST00000307142 UBTFP17480 764 aaKnown RBP16.56■□□□□ 0.24
SYNPO2-201ENST00000307142 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
SYNPO2-201ENST00000307142 MYT1LQ9UL68 1186 aa16.42■□□□□ 0.22
SYNPO2-201ENST00000307142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.36■□□□□ 0.21
SYNPO2-201ENST00000307142 HNRNPUL2Q1KMD3 747 aaKnown RBP16.36■□□□□ 0.21
SYNPO2-201ENST00000307142 PCGF6Q9BYE7 350 aa16.27■□□□□ 0.19
SYNPO2-201ENST00000307142 CHIC1Q5VXU3 224 aa16.12■□□□□ 0.17
SYNPO2-201ENST00000307142 CCER1Q8TC90 406 aaPredicted RBP16.09■□□□□ 0.17
SYNPO2-201ENST00000307142 PPARGC1BQ86YN6 1023 aaKnown RBP16.07■□□□□ 0.16
SYNPO2-201ENST00000307142 PELP1Q8IZL8 1130 aaKnown RBP16.06■□□□□ 0.16
SYNPO2-201ENST00000307142 FBLN2P98095 1184 aa16.01■□□□□ 0.15
SYNPO2-201ENST00000307142 ITGAEP38570 1179 aa16■□□□□ 0.15
SYNPO2-201ENST00000307142 SCRIBQ14160 1630 aa15.83■□□□□ 0.13
SYNPO2-201ENST00000307142 POLR3GLQ9BT43 218 aa15.82■□□□□ 0.12
SYNPO2-201ENST00000307142 ZEB1P37275 1124 aaPredicted RBP15.76■□□□□ 0.11
SYNPO2-201ENST00000307142 SLC4A1APQ9BWU0 796 aaKnown RBP15.75■□□□□ 0.11
SYNPO2-201ENST00000307142 LOC105371045A0A1W2PR82 267 aa15.7■□□□□ 0.1
SYNPO2-201ENST00000307142 CCDC180Q9P1Z9 1646 aa15.7■□□□□ 0.1
SYNPO2-201ENST00000307142 FAM50AQ14320 339 aaKnown RBP15.66■□□□□ 0.1
SYNPO2-201ENST00000307142 CNGB1Q14028 1251 aaPredicted RBP15.62■□□□□ 0.09
SYNPO2-201ENST00000307142 ARID3CA6NKF2 412 aa15.58■□□□□ 0.08
SYNPO2-201ENST00000307142 TRIM52Q96A61 297 aa15.56■□□□□ 0.08
SYNPO2-201ENST00000307142 RB1CC1Q8TDY2 1594 aa15.55■□□□□ 0.08
SYNPO2-201ENST00000307142 BCANQ96GW7 911 aa15.53■□□□□ 0.08
SYNPO2-201ENST00000307142 CENPBP07199 599 aaPredicted RBP15.53■□□□□ 0.08
SYNPO2-201ENST00000307142 TRIM26Q12899 539 aaPredicted RBP15.53■□□□□ 0.08
SYNPO2-201ENST00000307142 P3H3Q8IVL6 736 aa15.52■□□□□ 0.08
SYNPO2-201ENST00000307142 YTHDC1Q96MU7 727 aaKnown RBP15.51■□□□□ 0.07
SYNPO2-201ENST00000307142 PLPPR3Q6T4P5 718 aa15.48■□□□□ 0.07
SYNPO2-201ENST00000307142 NEFLP07196 543 aa15.48■□□□□ 0.07
SYNPO2-201ENST00000307142 NPM1P06748 294 aaKnown RBP eCLIP15.45■□□□□ 0.06
SYNPO2-201ENST00000307142 ERICH6Q7L0X2 663 aa15.45■□□□□ 0.06
SYNPO2-201ENST00000307142 ESF1Q9H501 851 aaKnown RBP15.42■□□□□ 0.06
SYNPO2-201ENST00000307142 ZNF777Q9ULD5 760 aaPredicted RBP15.39■□□□□ 0.05
SYNPO2-201ENST00000307142 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
SYNPO2-201ENST00000307142 ZNF326Q5BKZ1 582 aaKnown RBP15.34■□□□□ 0.05
SYNPO2-201ENST00000307142 NEUROD1Q13562 356 aa15.33■□□□□ 0.04
SYNPO2-201ENST00000307142 CDK11AQ9UQ88 783 aaPredicted RBP15.29■□□□□ 0.04
SYNPO2-201ENST00000307142 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
SYNPO2-201ENST00000307142 NACADO15069 1562 aa15.25■□□□□ 0.03
SYNPO2-201ENST00000307142 STAG3Q9UJ98 1225 aa15.25■□□□□ 0.03
SYNPO2-201ENST00000307142 ERCC6Q03468 1493 aa15.24■□□□□ 0.03
SYNPO2-201ENST00000307142 SLC24A1O60721 1099 aa15.24■□□□□ 0.03
SYNPO2-201ENST00000307142 CSRNP3Q8WYN3 585 aa15.2■□□□□ 0.02
SYNPO2-201ENST00000307142 CHGAP10645 457 aaKnown RBP15.17■□□□□ 0.02
SYNPO2-201ENST00000307142 BAZ1BQ9UIG0 1483 aaKnown RBP15.09■□□□□ 0.01
SYNPO2-201ENST00000307142 DAXXQ9UER7 740 aaPredicted RBP15.08■□□□□ 0.01
SYNPO2-201ENST00000307142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.05■□□□□ -0
SYNPO2-201ENST00000307142 HRCP23327 699 aa15.03■□□□□ -0
SYNPO2-201ENST00000307142 KCNH8Q96L42 1107 aa15.03■□□□□ -0
SYNPO2-201ENST00000307142 NEFMP07197 916 aa15□□□□□ -0.01
SYNPO2-201ENST00000307142 ARID4BQ4LE39 1312 aaPredicted RBP14.98□□□□□ -0.01
SYNPO2-201ENST00000307142 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
SYNPO2-201ENST00000307142 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
SYNPO2-201ENST00000307142 SCAF1Q9H7N4 1312 aaKnown RBP14.96□□□□□ -0.01
SYNPO2-201ENST00000307142 CHIC2Q9UKJ5 165 aa14.93□□□□□ -0.02
SYNPO2-201ENST00000307142 SENP3Q9H4L4 574 aaPredicted RBP14.91□□□□□ -0.02
SYNPO2-201ENST00000307142 BCL11AQ9H165 835 aa14.91□□□□□ -0.02
SYNPO2-201ENST00000307142 TSPY4P0CV99 314 aa14.9□□□□□ -0.02
SYNPO2-201ENST00000307142 TSPY10P0CW01 314 aa14.9□□□□□ -0.02
SYNPO2-201ENST00000307142 ZBTB47Q9UFB7 747 aaPredicted RBP14.9□□□□□ -0.02
SYNPO2-201ENST00000307142 ANP32CO43423 234 aa14.87□□□□□ -0.03
SYNPO2-201ENST00000307142 MTUS2Q5JR59 1369 aa14.87□□□□□ -0.03
SYNPO2-201ENST00000307142 DIEXFQ68CQ4 756 aaKnown RBP14.84□□□□□ -0.03
SYNPO2-201ENST00000307142 CANXP27824 592 aaKnown RBP14.84□□□□□ -0.03
SYNPO2-201ENST00000307142 PLEKHD1A6NEE1 506 aa14.83□□□□□ -0.03
SYNPO2-201ENST00000307142 C14orf37Q86TY3 774 aa14.83□□□□□ -0.04
SYNPO2-201ENST00000307142 PLEKHG5O94827 1062 aa14.83□□□□□ -0.04
SYNPO2-201ENST00000307142 A0A0G2JS52 829 aa14.81□□□□□ -0.04
SYNPO2-201ENST00000307142 PPP1R15AO75807 674 aaPredicted RBP14.81□□□□□ -0.04
SYNPO2-201ENST00000307142 BAZ1AQ9NRL2 1556 aaPredicted RBP14.8□□□□□ -0.04
SYNPO2-201ENST00000307142 RSF1Q96T23 1441 aaPredicted RBP14.77□□□□□ -0.05
SYNPO2-201ENST00000307142 ZBTB7CA1YPR0 619 aa14.76□□□□□ -0.05
SYNPO2-201ENST00000307142 KDM2AQ9Y2K7 1162 aa14.76□□□□□ -0.05
SYNPO2-201ENST00000307142 EIF4G1Q04637 1599 aaKnown RBP14.76□□□□□ -0.05
SYNPO2-201ENST00000307142 TONSLQ96HA7 1378 aa14.75□□□□□ -0.05
SYNPO2-201ENST00000307142 ZNF316A6NFI3 1004 aaPredicted RBP14.73□□□□□ -0.05
SYNPO2-201ENST00000307142 WRNQ14191 1432 aaPredicted RBP eCLIP14.73□□□□□ -0.05
SYNPO2-201ENST00000307142 KIF27Q86VH2 1401 aa14.72□□□□□ -0.05
SYNPO2-201ENST00000307142 HAP1P54257 671 aaPredicted RBP14.69□□□□□ -0.06
SYNPO2-201ENST00000307142 CECR2Q9BXF3 1484 aa14.69□□□□□ -0.06
SYNPO2-201ENST00000307142 DCAF1Q9Y4B6 1507 aa14.67□□□□□ -0.06
SYNPO2-201ENST00000307142 RRP7BPQ9NSQ0 103 aa14.67□□□□□ -0.06
SYNPO2-201ENST00000307142 CLIP1P30622 1438 aa14.67□□□□□ -0.06
SYNPO2-201ENST00000307142 SMARCA2P51531 1590 aa14.66□□□□□ -0.06
SYNPO2-201ENST00000307142 PDS5BQ9NTI5 1447 aa14.65□□□□□ -0.06
SYNPO2-201ENST00000307142 CFDP1Q9UEE9 299 aaPredicted RBP14.64□□□□□ -0.07
SYNPO2-201ENST00000307142 MLECQ14165 292 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms