RNA–Protein interactions for RNA: ENSMUST00000111564.7

Clip1-204, Transcript of CAP-Gly domain-containing linker protein 1, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Clip1, Length 5,609 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clip1-204ENSMUST00000111564 Rhox8Q6VSS7 320 aa19.3■□□□□ 0.68
Clip1-204ENSMUST00000111564 NischQ80TM9 1593 aa18.84■□□□□ 0.61
Clip1-204ENSMUST00000111564 Gm35339A0A140LHH9 1649 aa18.36■□□□□ 0.53
Clip1-204ENSMUST00000111564 Abcc9P70170 1546 aa18.14■□□□□ 0.49
Clip1-204ENSMUST00000111564 Abcc8B2RUS7 1588 aa17.9■□□□□ 0.46
Clip1-204ENSMUST00000111564 Esf1Q3V1V3 845 aaKnown RBP17.22■□□□□ 0.35
Clip1-204ENSMUST00000111564 Ube2uB1AUC4 352 aa17.1■□□□□ 0.33
Clip1-204ENSMUST00000111564 Zeb1Q64318 1117 aa17.05■□□□□ 0.32
Clip1-204ENSMUST00000111564 Cngb1E1AZ71 1325 aa17.02■□□□□ 0.32
Clip1-204ENSMUST00000111564 Ccdc136Q3TVA9 1136 aa16.92■□□□□ 0.3
Clip1-204ENSMUST00000111564 Ehmt2Q9Z148 1263 aaKnown RBP16.86■□□□□ 0.29
Clip1-204ENSMUST00000111564 Rpgrip1Q9EPQ2 1331 aa16.85■□□□□ 0.29
Clip1-204ENSMUST00000111564 Npm2Q80W85 207 aa16.82■□□□□ 0.28
Clip1-204ENSMUST00000111564 ScribQ80U72 1612 aa16.8■□□□□ 0.28
Clip1-204ENSMUST00000111564 Las1lA2BE28 776 aaKnown RBP16.76■□□□□ 0.27
Clip1-204ENSMUST00000111564 Wdr66E9Q743 1299 aa16.72■□□□□ 0.27
Clip1-204ENSMUST00000111564 Gab3Q8BSM5 595 aa16.67■□□□□ 0.26
Clip1-204ENSMUST00000111564 Trim41Q5NCC3 630 aa16.63■□□□□ 0.25
Clip1-204ENSMUST00000111564 Pelp1Q9DBD5 1123 aaKnown RBP16.58■□□□□ 0.24
Clip1-204ENSMUST00000111564 Myt1lP97500 1187 aa16.57■□□□□ 0.24
Clip1-204ENSMUST00000111564 Kdm5dQ62240 1548 aa16.56■□□□□ 0.24
Clip1-204ENSMUST00000111564 NacadQ5SWP3 1504 aa16.56■□□□□ 0.24
Clip1-204ENSMUST00000111564 Dcaf1Q80TR8 1506 aa16.53■□□□□ 0.24
Clip1-204ENSMUST00000111564 Rb1cc1Q9ESK9 1588 aa16.49■□□□□ 0.23
Clip1-204ENSMUST00000111564 Rtl1Q7M732 1744 aa16.28■□□□□ 0.2
Clip1-204ENSMUST00000111564 Zcchc6Q5BLK4 1491 aaKnown RBP16.28■□□□□ 0.2
Clip1-204ENSMUST00000111564 Baz1aO88379 1555 aa16.24■□□□□ 0.19
Clip1-204ENSMUST00000111564 Sycp2Q9CUU3 1500 aa16.14■□□□□ 0.17
Clip1-204ENSMUST00000111564 Il27Q8K3I6 234 aa16.11■□□□□ 0.17
Clip1-204ENSMUST00000111564 Ccdc180J3QNE4 1664 aa15.99■□□□□ 0.15
Clip1-204ENSMUST00000111564 UbtfP25976 765 aaKnown RBP15.98■□□□□ 0.15
Clip1-204ENSMUST00000111564 Crybg2B7ZCC2 1516 aa15.91■□□□□ 0.14
Clip1-204ENSMUST00000111564 Slc24a1Q91WD8 1130 aa15.9■□□□□ 0.14
Clip1-204ENSMUST00000111564 Stra8P70278 393 aa15.89■□□□□ 0.13
Clip1-204ENSMUST00000111564 Os9Q8K2C7 672 aa15.84■□□□□ 0.13
Clip1-204ENSMUST00000111564 Amer1Q7TS75 1132 aa15.77■□□□□ 0.11
Clip1-204ENSMUST00000111564 NefmP08553 848 aa15.76■□□□□ 0.11
Clip1-204ENSMUST00000111564 Anp32bQ9EST5 272 aaKnown RBP15.76■□□□□ 0.11
Clip1-204ENSMUST00000111564 Smarca2Q6DIC0 1577 aa15.74■□□□□ 0.11
Clip1-204ENSMUST00000111564 BicraF8VPZ9 1578 aa15.71■□□□□ 0.11
Clip1-204ENSMUST00000111564 Fam50aQ9WV03 339 aaKnown RBP15.67■□□□□ 0.1
Clip1-204ENSMUST00000111564 Ap3b1Q9Z1T1 1105 aa15.66■□□□□ 0.1
Clip1-204ENSMUST00000111564 Neurod1Q60867 357 aa15.66■□□□□ 0.1
Clip1-204ENSMUST00000111564 Brd4Q9ESU6 1400 aaKnown RBP15.64■□□□□ 0.09
Clip1-204ENSMUST00000111564 Cecr2E9Q2Z1 1453 aa15.61■□□□□ 0.09
Clip1-204ENSMUST00000111564 NrdcQ8BHG1 1161 aa15.6■□□□□ 0.09
Clip1-204ENSMUST00000111564 CenpbP27790 599 aa15.59■□□□□ 0.09
Clip1-204ENSMUST00000111564 Gm13697A2AK42 830 aa15.59■□□□□ 0.09
Clip1-204ENSMUST00000111564 NclP09405 707 aaKnown RBP15.53■□□□□ 0.08
Clip1-204ENSMUST00000111564 HrcG5E8J6 738 aa15.5■□□□□ 0.07
Clip1-204ENSMUST00000111564 NeflP08551 543 aa15.48■□□□□ 0.07
Clip1-204ENSMUST00000111564 Npm1Q61937 292 aaKnown RBP15.45■□□□□ 0.06
Clip1-204ENSMUST00000111564 4930567H17RikQ3V0K5 233 aa15.44■□□□□ 0.06
Clip1-204ENSMUST00000111564 Pds5bQ4VA53 1446 aaKnown RBP15.43■□□□□ 0.06
Clip1-204ENSMUST00000111564 Ifnlr1Q8CGK5 535 aa15.43■□□□□ 0.06
Clip1-204ENSMUST00000111564 Zbtb7cQ8VCZ7 619 aa15.4■□□□□ 0.06
Clip1-204ENSMUST00000111564 Smarca4Q3TKT4 1613 aaKnown RBP15.4■□□□□ 0.06
Clip1-204ENSMUST00000111564 Acin1Q9JIX8 1338 aaKnown RBP15.38■□□□□ 0.05
Clip1-204ENSMUST00000111564 Hnrnpul2Q00PI9 745 aaKnown RBP15.37■□□□□ 0.05
Clip1-204ENSMUST00000111564 Synj1Q8CHC4 1574 aa15.37■□□□□ 0.05
Clip1-204ENSMUST00000111564 CftrP26361 1476 aa15.35■□□□□ 0.05
Clip1-204ENSMUST00000111564 Atad2bE9Q166 1460 aaKnown RBP15.34■□□□□ 0.05
Clip1-204ENSMUST00000111564 Eif5bQ05D44 1216 aaKnown RBP15.3■□□□□ 0.04
Clip1-204ENSMUST00000111564 Atp1b4Q99ME6 356 aa15.28■□□□□ 0.04
Clip1-204ENSMUST00000111564 Gm13695A2AK44 830 aa15.27■□□□□ 0.03
Clip1-204ENSMUST00000111564 Cdk11bP24788 784 aaKnown RBP15.26■□□□□ 0.03
Clip1-204ENSMUST00000111564 Golga3P55937 1487 aa15.26■□□□□ 0.03
Clip1-204ENSMUST00000111564 Chic1Q8CBW7 227 aa15.26■□□□□ 0.03
Clip1-204ENSMUST00000111564 Ttbk1Q6PCN3 1308 aa15.26■□□□□ 0.03
Clip1-204ENSMUST00000111564 Iqgap2Q3UQ44 1575 aa15.26■□□□□ 0.03
Clip1-204ENSMUST00000111564 Ercc6F8VPZ5 1481 aa15.25■□□□□ 0.03
Clip1-204ENSMUST00000111564 Plppr3Q7TPB0 716 aa15.24■□□□□ 0.03
Clip1-204ENSMUST00000111564 Cttnbp2B9EJA2 1648 aa15.24■□□□□ 0.03
Clip1-204ENSMUST00000111564 4933416C03RikQ3V063 378 aa15.23■□□□□ 0.03
Clip1-204ENSMUST00000111564 Erich6D3Z6S9 713 aa15.19■□□□□ 0.02
Clip1-204ENSMUST00000111564 Lmod2Q3UHZ5 550 aa15.18■□□□□ 0.02
Clip1-204ENSMUST00000111564 Tnnt3Q9QZ47 272 aa15.17■□□□□ 0.02
Clip1-204ENSMUST00000111564 DiexfQ8BTT6 772 aaKnown RBP15.13■□□□□ 0.01
Clip1-204ENSMUST00000111564 Cep164Q5DU05 1446 aa15.09■□□□□ 0.01
Clip1-204ENSMUST00000111564 Fkbp15Q6P9Q6 1216 aaKnown RBP15.09■□□□□ 0.01
Clip1-204ENSMUST00000111564 TonslQ6NZL6 1363 aa15.08■□□□□ 0
Clip1-204ENSMUST00000111564 Hdac5Q9Z2V6 1113 aa15.07■□□□□ 0
Clip1-204ENSMUST00000111564 Rsf1E9PWW9 1441 aaKnown RBP15.06■□□□□ 0
Clip1-204ENSMUST00000111564 Ubl4bQ9CQ84 188 aa15.06■□□□□ 0
Clip1-204ENSMUST00000111564 Nop58Q6DFW4 536 aaKnown RBP15.04■□□□□ -0
Clip1-204ENSMUST00000111564 Nlrp6Q91WS2 869 aa15.04■□□□□ -0
Clip1-204ENSMUST00000111564 Zbtb4Q5F293 982 aa15.04■□□□□ -0
Clip1-204ENSMUST00000111564 Ccdc88bQ4QRL3 1481 aa15.02■□□□□ -0
Clip1-204ENSMUST00000111564 Ppargc1bQ8VHJ7 1014 aa15.02□□□□□ -0.01
Clip1-204ENSMUST00000111564 Frmpd1A2AKB4 1549 aa15□□□□□ -0.01
Clip1-204ENSMUST00000111564 Prdm10Q3UTQ7 1184 aa14.99□□□□□ -0.01
Clip1-204ENSMUST00000111564 Kif15Q6P9L6 1387 aa14.99□□□□□ -0.01
Clip1-204ENSMUST00000111564 Safb2Q80YR5 991 aaKnown RBP14.96□□□□□ -0.01
Clip1-204ENSMUST00000111564 Wdr62Q3U3T8 1523 aa14.96□□□□□ -0.01
Clip1-204ENSMUST00000111564 Phldb1Q6PDH0 1371 aaKnown RBP14.93□□□□□ -0.02
Clip1-204ENSMUST00000111564 Fmn1Q05860 1466 aa14.92□□□□□ -0.02
Clip1-204ENSMUST00000111564 Plekhg3Q4VAC9 1341 aa14.91□□□□□ -0.02
Clip1-204ENSMUST00000111564 Polr3glQ8R0C0 218 aa14.89□□□□□ -0.03
Clip1-204ENSMUST00000111564 Top2bQ64511 1612 aa14.88□□□□□ -0.03
Clip1-204ENSMUST00000111564 Cc2d2aQ8CFW7 1633 aa14.87□□□□□ -0.03
Retrieved 100 of 22,080 RNA–protein pairs in 26 ms