RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KDELC1Q6UW63 502 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 TCAIMQ8N3R3 496 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 ZNF781Q8N8C0 355 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 DOK4Q8TEW6 326 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 TWIST2Q8WVJ9 160 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 SLC13A3Q8WWT9 602 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 KCNJ9Q92806 393 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 CNDP1Q96KN2 507 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 NOL6Q9H6R4 1146 aaKnown RBP9.02□□□□□ -0.96
VPS39-205ENST00000562258 ATAD3AQ9NVI7 634 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 ACSL5Q9ULC5 683 aa9.02□□□□□ -0.96
VPS39-205ENST00000562258 FAM86C2PA6NEL3 165 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 GLOD5A6NK44 160 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 I6L893 689 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 ITPKBP27987 946 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 RYKP34925 604 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 CCNFP41002 786 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 RABIFP47224 123 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ID2Q02363 134 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 VAC14Q08AM6 782 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 FRG1Q14331 258 aaKnown RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 DNAL1Q4LDG9 190 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 TCHHL1Q5QJ38 904 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 KIAA1211LQ6NV74 962 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 TMEM135Q86UB9 458 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 SDR16C5Q8N3Y7 309 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 SRFBP1Q8NEF9 429 aaKnown RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 OR9A1PQ8NGU1 263 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 KCNN1Q92952 543 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 NDC1Q9BTX1 674 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 ADAP2Q9NPF8 381 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ATXN10Q9UBB4 475 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ZNF180Q9UJW8 692 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 SUFUQ9UMX1 484 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 PCNTO95613 3336 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ICE1Q9Y2F5 2266 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 DOCK8Q8NF50 2099 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 TMEM233B4DJY2 109 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 HOXC11O43248 304 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 PAPSS2O95340 614 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 CDH1P12830 882 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ITGAXP20702 1163 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 CPN2P22792 545 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 VSX2P58304 361 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 SRP54P61011 504 aaKnown RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 CTBSQ01459 385 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 UBAP2LQ14157 1087 aaKnown RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 SEMA3AQ14563 771 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ZNHIT3Q15649 155 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 GPAT3Q53EU6 434 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ISG20Q96AZ6 181 aaKnown RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 PPM1MQ96MI6 270 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 SLC6A18Q96N87 628 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 CDRT15Q96T59 188 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 TMEM168Q9H0V1 697 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ANKHQ9HCJ1 492 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 WASF2Q9Y6W5 498 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 POM121BA6NF01 834 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 LRRC14BA6NHZ5 514 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 WASH4PA8MWX3 477 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 RFXANKO14593 260 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 NR2F1P10589 423 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 BUD31P41223 144 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 CCR8P51685 355 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 HSPB3Q12988 150 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 PCBP2Q15366 365 aaKnown RBP eCLIP9.02□□□□□ -0.972e-6■■■■□ 23.1
VPS39-205ENST00000562258 SPDYCQ5MJ68 293 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 OTUD1Q5VV17 481 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 ASTLQ6HA08 431 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 TMIGD1Q6UXZ0 262 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 C16orf62Q7Z3J2 963 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 TRIM73Q86UV7 250 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ADIPOR2Q86V24 386 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 THOC6Q86W42 341 aaKnown RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 TMEM126BQ8IUX1 230 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 SFTPA1Q8IWL2 248 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 CENPLQ8N0S6 344 aaPredicted RBP9.02□□□□□ -0.97
VPS39-205ENST00000562258 IL17RCQ8NAC3 791 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 KYQ8NBH2 561 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 MRGPRX1Q96LB2 322 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 GPR22Q99680 433 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 DPH7Q9BTV6 452 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 FBRSQ9HAH7 460 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 OBP2AQ9NY56 170 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 CROTQ9UKG9 612 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 MMP17Q9ULZ9 603 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 DHRS7Q9Y394 339 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 ACTL7BQ9Y614 415 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 R4GN57 208 aa9.02□□□□□ -0.97
VPS39-205ENST00000562258 DLX3O60479 287 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 EPN2O95208 641 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 CCR10P46092 362 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 GSSP48637 474 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 AP1S2P56377 157 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 CDK3Q00526 305 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 SNCBQ16143 134 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 WSCD2Q2TBF2 565 aa9.01□□□□□ -0.97
VPS39-205ENST00000562258 BNC2Q6ZN30 1099 aaPredicted RBP9.01□□□□□ -0.97
VPS39-205ENST00000562258 ALYREFQ86V81 257 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms