RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 BRINP2Q9C0B6 783 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 ATG10Q9H0Y0 220 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 ACTR8Q9H981 624 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 INTS7Q9NVH2 962 aaKnown RBP12.35□□□□□ -0.43
USP3-213ENST00000559711 AIG1Q9NVV5 245 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 TMEM45AQ9NWC5 275 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SLC23A2Q9UGH3 650 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 MMP17Q9ULZ9 603 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SLC22A14Q9Y267 594 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 OR1A2Q9Y585 309 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 LRRK1Q38SD2 2015 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 KCNE1BA0A087WTH5 132 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SLC28A1O00337 649 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 MANBAO00462 879 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 LSM1O15116 133 aaKnown RBP12.35□□□□□ -0.43
USP3-213ENST00000559711 KMOO15229 486 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 UGDHO60701 494 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SLC16A8O95907 504 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 ACADMP11310 421 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 MYCLP1P12525 358 aaPredicted RBP12.35□□□□□ -0.43
USP3-213ENST00000559711 NDUFV2P19404 249 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 IMPA1P29218 277 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 BDKRB1P46663 353 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 NUDT2P50583 147 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 DIO3P55073 304 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 EMX2Q04743 252 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 TDGQ13569 410 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 KIF19Q2TAC6 998 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 ATP6AP1LQ52LC2 224 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 METRNLQ641Q3 311 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 PAOXQ6QHF9 649 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 C16orf89Q6UX73 402 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 UNC5DQ6UXZ4 953 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 DEFB107AQ8IZN7 70 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 CLPTM1LQ96KA5 538 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SLC25A23Q9BV35 468 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 ZDHHC5Q9C0B5 715 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 NDE1Q9NXR1 346 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 CCDC167Q9P0B6 97 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SLC7A8Q9UHI5 535 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 BAIAP2L1Q9UHR4 511 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 PRKAB1Q9Y478 270 aa12.35□□□□□ -0.43
USP3-213ENST00000559711 SERTM1A2A2V5 107 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 PRR23AA6NEV1 266 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 PRAMEF4O60810 478 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 KRT6AP02538 564 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 KRT6BP04259 564 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 HOXC4P09017 264 aaPredicted RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 ITPKAP23677 461 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 IGFALSP35858 605 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 KRT6CP48668 564 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 DMPKQ09013 629 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 NAE1Q13564 534 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 RPS6KA2Q15349 733 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 SKIV2LQ15477 1246 aaKnown RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 SNCBQ16143 134 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 PDCD4Q53EL6 469 aaKnown RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 PRAMEF9Q5VWM5 478 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 LIPJQ5W064 366 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 NET1Q7Z628 596 aaPredicted RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 PDZD3Q86UT5 571 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 THOC6Q86W42 341 aaKnown RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 OR9I1Q8NGQ6 314 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 OR9A1PQ8NGU1 263 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 TSPEARQ8WU66 669 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 HLA-CQ95604 372 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 LRCH3Q96II8 777 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 PPP3R2Q96LZ3 170 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 MRPL1Q9BYD6 325 aaKnown RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 RMI1Q9H9A7 625 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 KLQ9UEF7 1012 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 PRPF19Q9UMS4 504 aaKnown RBP12.34□□□□□ -0.43
USP3-213ENST00000559711 SLC17A4Q9Y2C5 497 aa12.34□□□□□ -0.43
USP3-213ENST00000559711 EYSQ5T1H1 3165 aa12.33□□□□□ -0.43
USP3-213ENST00000559711 MAN2B1O00754 1011 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 FBP2O00757 339 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 FFAR3O14843 346 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 GPR42O15529 346 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 RGS14O43566 566 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 NRP2O60462 931 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 FUCA1P04066 466 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 PPP2CBP62714 309 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 PPP2CAP67775 309 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 TBL3Q12788 808 aaKnown RBP12.33□□□□□ -0.44
USP3-213ENST00000559711 ART3Q13508 389 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 NR6A1Q15406 480 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 AP5B1Q2VPB7 878 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 PLA2G4EQ3MJ16 856 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 LEXMQ3ZCV2 418 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 PGAM4Q8N0Y7 254 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 FNDC5Q8NAU1 212 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 MAGEC3Q8TD91 643 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 ZNF480Q8WV37 535 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 WDR60Q8WVS4 1066 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 APOOQ9BUR5 198 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 SLC52A3Q9NQ40 469 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 FARSBQ9NSD9 589 aaKnown RBP12.33□□□□□ -0.44
USP3-213ENST00000559711 ZIM2Q9NZV7 527 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 ZNHIT2Q9UHR6 403 aa12.33□□□□□ -0.44
USP3-213ENST00000559711 ZNF490Q9ULM2 529 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms